Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13545

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,084,065	-		DDA3937_RS13535	0.80	-0.8
3,084,081	+		DDA3937_RS13535	0.81	+0.4
3,084,081	+		DDA3937_RS13535	0.81	-2.0
3,084,081	+				+0.0
3,084,227	+		DDA3937_RS13535	0.89	-0.4
3,084,228	-		DDA3937_RS13535	0.89	+0.0
3,084,231	+		DDA3937_RS13535	0.90	-0.8
3,084,232	-		DDA3937_RS13535	0.90	-1.2
3,084,241	+				+0.5
3,084,241	+				+0.5
3,084,272	-				-0.9
3,084,272	-				-0.5
3,084,293	-				-1.8
3,084,371	-				-2.1
3,084,406	+				-1.5
3,084,407	-				-1.6
3,084,407	-				+2.5
3,084,409	+				+0.6
3,084,409	+				+1.4
3,084,409	+				-0.2
3,084,420	-				+3.0
3,084,420	-				-2.0
3,084,479	-				-1.8
3,084,523	-				+0.6
3,084,523	-				-0.5
3,084,526	-				-1.2
3,084,572	+				-2.0
3,084,572	+				-1.1
3,084,572	+				-2.0
3,084,572	+				-1.4
3,084,601	+		DDA3937_RS13540	0.15	-2.3
3,084,601	+		DDA3937_RS13540	0.15	-1.1
3,084,601	+		DDA3937_RS13540	0.15	-0.3
3,084,601	+		DDA3937_RS13540	0.15	-0.4
3,084,602	-		DDA3937_RS13540	0.16	+0.4
3,084,602	-		DDA3937_RS13540	0.16	+0.2
3,084,602	-		DDA3937_RS13540	0.16	+0.1
3,084,602	-		DDA3937_RS13540	0.16	-0.6
3,084,602	-		DDA3937_RS13540	0.16	-2.5
3,084,602	-		DDA3937_RS13540	0.16	-1.3
3,084,602	-		DDA3937_RS13540	0.16	+1.9
3,084,602	-		DDA3937_RS13540	0.16	-1.1
3,084,634	-		DDA3937_RS13540	0.22	-0.0
3,084,725	-		DDA3937_RS13540	0.40	+1.4
3,084,766	+		DDA3937_RS13540	0.49	-1.2
3,084,766	+		DDA3937_RS13540	0.49	-1.1
3,084,767	-		DDA3937_RS13540	0.49	+1.4
3,084,777	+		DDA3937_RS13540	0.51	-1.6
3,084,778	-		DDA3937_RS13540	0.51	-0.6
3,084,802	+		DDA3937_RS13540	0.56	-2.6
3,084,857	-		DDA3937_RS13540	0.67	-0.3
3,084,859	+		DDA3937_RS13540	0.67	+0.0
3,084,859	+		DDA3937_RS13540	0.67	-1.0
3,084,925	+		DDA3937_RS13540	0.81	-0.5
3,084,936	+		DDA3937_RS13540	0.83	-0.9
3,084,937	-		DDA3937_RS13540	0.83	-1.5
3,084,937	-		DDA3937_RS13540	0.83	-0.4
3,084,977	+				+0.8
3,084,977	+				-0.5
3,084,977	+				-1.4
3,084,977	+				-1.2
3,084,978	-				-0.2
3,084,978	-				-1.6
3,084,978	-				-1.5
3,084,978	-				+0.4
3,084,978	-				-1.4
3,084,978	-				-1.2
3,084,978	-				+0.5
3,085,034	+				-0.1
3,085,035	-				+1.4
3,085,039	+				-2.8
3,085,039	+				-0.6
3,085,039	+				-2.8
3,085,039	+				-1.3
3,085,039	+				-0.6
3,085,039	+				-2.0
3,085,040	-				+0.4
3,085,040	-				-0.6
3,085,040	-				+2.4
3,085,042	-				-0.4
3,085,042	-				-0.4
3,085,042	-				-0.6
3,085,047	+				-0.3
3,085,047	+				-0.8
3,085,048	-				+1.4
3,085,048	-				-0.4
3,085,058	+				-2.1
3,085,058	+				+0.6
3,085,059	-				-2.0
3,085,059	-				-0.7
3,085,059	-				+0.4
3,085,130	-				-0.8
3,085,135	-				-3.0
3,085,181	+				+0.0
3,085,247	+				-1.3
3,085,248	-				+0.0
3,085,328	+		DDA3937_RS13545	0.13	-1.4
3,085,349	+		DDA3937_RS13545	0.14	-1.5
3,085,350	-		DDA3937_RS13545	0.15	-1.0
3,085,394	+		DDA3937_RS13545	0.17	-0.1
3,085,394	+		DDA3937_RS13545	0.17	-2.4
3,085,394	+		DDA3937_RS13545	0.17	-1.2
3,085,394	+		DDA3937_RS13545	0.17	-0.4
3,085,395	-		DDA3937_RS13545	0.17	-1.6
3,085,449	+		DDA3937_RS13545	0.19	+0.5
3,085,449	+		DDA3937_RS13545	0.19	+0.0
3,085,450	-		DDA3937_RS13545	0.19	-2.6
3,085,453	+		DDA3937_RS13545	0.20	+0.4
3,085,453	+		DDA3937_RS13545	0.20	-1.4
3,085,453	+		DDA3937_RS13545	0.20	-0.6
3,085,454	-		DDA3937_RS13545	0.20	-1.1
3,085,454	-		DDA3937_RS13545	0.20	+1.4
3,085,454	-		DDA3937_RS13545	0.20	-0.8
3,085,461	+		DDA3937_RS13545	0.20	-1.5
3,085,462	-		DDA3937_RS13545	0.20	-1.5
3,085,462	-		DDA3937_RS13545	0.20	-1.6
3,085,641	+		DDA3937_RS13545	0.29	-0.4
3,085,734	+		DDA3937_RS13545	0.34	-1.1
3,085,734	+		DDA3937_RS13545	0.34	+1.8
3,085,734	+		DDA3937_RS13545	0.34	-0.0
3,085,734	+		DDA3937_RS13545	0.34	+1.0
3,085,783	-		DDA3937_RS13545	0.36	-1.9
3,085,783	-				+2.4
3,085,783	-		DDA3937_RS13545	0.36	-2.0
3,085,783	-		DDA3937_RS13545	0.36	+1.1
3,085,783	-		DDA3937_RS13545	0.36	-1.2
3,085,783	-		DDA3937_RS13545	0.36	+1.2
3,085,845	+		DDA3937_RS13545	0.39	-1.2
3,085,846	-		DDA3937_RS13545	0.39	+0.8
3,085,912	-		DDA3937_RS13545	0.42	-1.2
3,085,912	-		DDA3937_RS13545	0.42	+0.4
3,086,026	+		DDA3937_RS13545	0.48	-0.9
3,086,026	+				+0.4
3,086,027	-		DDA3937_RS13545	0.48	-0.6
3,086,027	-		DDA3937_RS13545	0.48	-1.2
3,086,030	+		DDA3937_RS13545	0.48	-2.1
3,086,031	-		DDA3937_RS13545	0.48	-1.4
3,086,031	-		DDA3937_RS13545	0.48	+0.0
3,086,031	-		DDA3937_RS13545	0.48	-0.8
3,086,031	-		DDA3937_RS13545	0.48	-1.2
3,086,031	-		DDA3937_RS13545	0.48	-1.0
3,086,031	-		DDA3937_RS13545	0.48	-2.1
3,086,031	-		DDA3937_RS13545	0.48	-0.5
3,086,031	-		DDA3937_RS13545	0.48	-1.1
3,086,046	+		DDA3937_RS13545	0.49	-1.5
3,086,046	+		DDA3937_RS13545	0.49	+1.0
3,086,046	+		DDA3937_RS13545	0.49	-0.8
3,086,047	-		DDA3937_RS13545	0.49	-1.6
3,086,093	-		DDA3937_RS13545	0.51	+0.4
3,086,093	-		DDA3937_RS13545	0.51	-0.7
3,086,106	+		DDA3937_RS13545	0.52	-1.8
3,086,106	+		DDA3937_RS13545	0.52	-0.6
3,086,106	+		DDA3937_RS13545	0.52	-0.2
3,086,106	+		DDA3937_RS13545	0.52	-1.6
3,086,106	+		DDA3937_RS13545	0.52	-0.7
3,086,107	-		DDA3937_RS13545	0.52	+0.4
3,086,107	-		DDA3937_RS13545	0.52	-0.5
3,086,107	-		DDA3937_RS13545	0.52	-1.7
3,086,107	-		DDA3937_RS13545	0.52	-2.0
3,086,109	+		DDA3937_RS13545	0.52	-1.2
3,086,110	-		DDA3937_RS13545	0.52	-0.4
3,086,172	+		DDA3937_RS13545	0.55	-1.4
3,086,173	-		DDA3937_RS13545	0.55	-1.1
3,086,173	-		DDA3937_RS13545	0.55	-1.9
3,086,472	+		DDA3937_RS13545	0.70	-0.8
3,086,482	+		DDA3937_RS13545	0.71	+0.0
3,086,483	-		DDA3937_RS13545	0.71	+0.0
3,086,483	-		DDA3937_RS13545	0.71	-0.7
3,086,493	+		DDA3937_RS13545	0.71	-1.0
3,086,493	+		DDA3937_RS13545	0.71	-1.0
3,086,493	+		DDA3937_RS13545	0.71	+2.4
3,086,493	+		DDA3937_RS13545	0.71	-1.0
3,086,493	+		DDA3937_RS13545	0.71	-1.2
3,086,494	-		DDA3937_RS13545	0.71	+0.4
3,086,494	-		DDA3937_RS13545	0.71	+1.4
3,086,499	+		DDA3937_RS13545	0.72	-1.6
3,086,499	+		DDA3937_RS13545	0.72	-0.5
3,086,500	-		DDA3937_RS13545	0.72	-2.0
3,086,500	-		DDA3937_RS13545	0.72	-1.0
3,086,500	-		DDA3937_RS13545	0.72	-1.2
3,086,580	+		DDA3937_RS13545	0.76	-1.2
3,086,581	-		DDA3937_RS13545	0.76	-0.9
3,086,589	+		DDA3937_RS13545	0.76	-2.0
3,086,730	+		DDA3937_RS13545	0.83	-1.9
3,086,730	+		DDA3937_RS13545	0.83	-1.5
3,086,730	+		DDA3937_RS13545	0.83	-1.5
3,086,730	+		DDA3937_RS13545	0.83	-2.0
3,086,730	+		DDA3937_RS13545	0.83	-0.4
3,086,731	-		DDA3937_RS13545	0.83	-1.2
3,086,731	-		DDA3937_RS13545	0.83	-0.6
3,086,731	-				+1.4
3,086,732	+		DDA3937_RS13545	0.83	-0.6
3,086,732	+		DDA3937_RS13545	0.83	-1.4
3,086,733	-		DDA3937_RS13545	0.83	-3.4
3,086,733	-		DDA3937_RS13545	0.83	+2.7
3,086,771	+		DDA3937_RS13545	0.85	-0.2
3,086,772	-		DDA3937_RS13545	0.85	+0.9
3,086,824	-		DDA3937_RS13545	0.88	-1.0
3,086,878	+				+1.4
3,086,878	+				-0.0
3,086,879	-				-0.6
3,086,879	-				-1.4
3,086,881	+				-1.0
3,086,881	+				-1.2
3,086,881	+				-1.2
3,086,882	-				-0.6
3,086,882	-				-0.4
3,086,902	+				-0.6
3,086,903	-				-2.0
3,086,934	+				-1.2
3,086,957	-				-2.0
3,087,004	+				-2.0
3,087,004	+				-1.2
3,087,005	-				-0.1
3,087,005	-				-1.0
3,087,005	-				-1.3
3,087,161	+				+0.4
3,087,161	+				-0.3
3,087,161	+				+0.4
3,087,161	+				-0.0
3,087,162	-				-3.1
3,087,162	-				+0.6
3,087,164	+				-1.6
3,087,164	+				-0.8
3,087,165	-				-0.4
3,087,165	-				-2.1
3,087,165	-				-1.8
3,087,165	-				-0.1
3,087,258	+		DDA3937_RS13550	0.15	-0.0
3,087,259	-		DDA3937_RS13550	0.15	-2.6
3,087,296	+		DDA3937_RS13550	0.18	-3.2
3,087,339	-		DDA3937_RS13550	0.22	-1.1
3,087,371	+		DDA3937_RS13550	0.25	-1.5
3,087,372	-		DDA3937_RS13550	0.25	-0.4
3,087,382	-		DDA3937_RS13550	0.26	-0.1
3,087,492	+		DDA3937_RS13550	0.36	+0.6
3,087,493	-		DDA3937_RS13550	0.36	+2.1
3,087,493	-		DDA3937_RS13550	0.36	-0.6
3,087,493	-		DDA3937_RS13550	0.36	+1.3
3,087,519	+		DDA3937_RS13550	0.38	+0.1
3,087,533	+		DDA3937_RS13550	0.39	+1.4
3,087,534	-		DDA3937_RS13550	0.39	+1.5
3,087,552	+				+1.7
3,087,552	+		DDA3937_RS13550	0.41	-0.2
3,087,552	+		DDA3937_RS13550	0.41	+1.9
3,087,552	+		DDA3937_RS13550	0.41	-1.4
3,087,552	+		DDA3937_RS13550	0.41	+1.5
3,087,552	+				+2.8
3,087,553	-		DDA3937_RS13550	0.41	+0.7
3,087,553	-		DDA3937_RS13550	0.41	+1.6
3,087,553	-		DDA3937_RS13550	0.41	+1.2
3,087,553	-		DDA3937_RS13550	0.41	-0.7
3,087,553	-		DDA3937_RS13550	0.41	+1.1
3,087,553	-		DDA3937_RS13550	0.41	+1.6
3,087,553	-		DDA3937_RS13550	0.41	+1.9
3,087,554	+		DDA3937_RS13550	0.41	+2.6
3,087,605	+		DDA3937_RS13550	0.46	+3.5
3,087,677	+		DDA3937_RS13550	0.52	+0.6
3,087,678	-		DDA3937_RS13550	0.52	+2.2
3,087,678	-		DDA3937_RS13550	0.52	+1.2
3,087,698	+		DDA3937_RS13550	0.54	+1.2
3,087,698	+		DDA3937_RS13550	0.54	+1.8
3,087,699	-		DDA3937_RS13550	0.54	+1.4
3,087,719	+		DDA3937_RS13550	0.56	-0.2
3,087,720	-		DDA3937_RS13550	0.56	+2.3
3,087,721	+		DDA3937_RS13550	0.56	+1.9
3,087,721	+				+0.8
3,087,721	+		DDA3937_RS13550	0.56	+1.4
3,087,721	+		DDA3937_RS13550	0.56	+0.8
3,087,721	+		DDA3937_RS13550	0.56	-0.2
3,087,721	+		DDA3937_RS13550	0.56	+3.4
3,087,722	-		DDA3937_RS13550	0.56	+1.0
3,087,722	-				+1.4
3,087,722	-		DDA3937_RS13550	0.56	+0.6
3,087,722	-		DDA3937_RS13550	0.56	-0.3
3,087,722	-		DDA3937_RS13550	0.56	+1.3
3,087,722	-		DDA3937_RS13550	0.56	+2.7
3,087,785	+		DDA3937_RS13550	0.61	+1.1
3,087,785	+		DDA3937_RS13550	0.61	-0.7
3,087,785	+		DDA3937_RS13550	0.61	+0.1
3,087,785	+		DDA3937_RS13550	0.61	+0.8
3,087,786	-		DDA3937_RS13550	0.62	-2.2
3,087,789	+		DDA3937_RS13550	0.62	-1.6
3,087,789	+		DDA3937_RS13550	0.62	+3.0
3,087,790	-		DDA3937_RS13550	0.62	+0.2
3,087,790	-		DDA3937_RS13550	0.62	-1.3
3,087,790	-		DDA3937_RS13550	0.62	+0.7
3,087,829	-		DDA3937_RS13550	0.65	+0.2
3,087,836	+		DDA3937_RS13550	0.66	+1.7
3,087,836	+		DDA3937_RS13550	0.66	+0.0
3,087,837	-		DDA3937_RS13550	0.66	+3.1
3,087,936	+		DDA3937_RS13550	0.75	-0.1
3,087,937	-		DDA3937_RS13550	0.75	+0.9
3,087,937	-		DDA3937_RS13550	0.75	+2.0
3,087,937	-		DDA3937_RS13550	0.75	+0.6
3,088,016	+		DDA3937_RS13550	0.82	+0.8
3,088,016	+		DDA3937_RS13550	0.82	+2.1
3,088,046	-		DDA3937_RS13550	0.85	+1.0