Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13540

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,083,540	-		DDA3937_RS13535	0.49	-1.6
3,083,540	-		DDA3937_RS13535	0.49	-1.1
3,083,569	+		DDA3937_RS13535	0.51	-1.4
3,083,571	+		DDA3937_RS13535	0.51	-0.6
3,083,571	+		DDA3937_RS13535	0.51	-1.9
3,083,572	-		DDA3937_RS13535	0.51	-0.5
3,083,572	-		DDA3937_RS13535	0.51	-3.2
3,083,572	-		DDA3937_RS13535	0.51	-0.6
3,083,720	-		DDA3937_RS13535	0.60	-0.7
3,083,720	-		DDA3937_RS13535	0.60	-1.6
3,083,729	-		DDA3937_RS13535	0.60	-1.1
3,083,735	-		DDA3937_RS13535	0.60	+0.6
3,083,735	-		DDA3937_RS13535	0.60	-0.4
3,083,750	-		DDA3937_RS13535	0.61	-0.5
3,083,826	-		DDA3937_RS13535	0.66	-0.2
3,083,871	+		DDA3937_RS13535	0.68	-1.0
3,083,872	-		DDA3937_RS13535	0.69	-1.2
3,083,883	+		DDA3937_RS13535	0.69	+0.2
3,083,896	-		DDA3937_RS13535	0.70	-0.5
3,083,901	+		DDA3937_RS13535	0.70	+0.4
3,083,902	-		DDA3937_RS13535	0.70	-1.4
3,083,905	-		DDA3937_RS13535	0.70	+1.1
3,083,905	-		DDA3937_RS13535	0.70	+0.1
3,083,997	-		DDA3937_RS13535	0.76	-1.2
3,084,018	+		DDA3937_RS13535	0.77	+0.2
3,084,018	+		DDA3937_RS13535	0.77	-2.0
3,084,018	+		DDA3937_RS13535	0.77	-0.3
3,084,019	-		DDA3937_RS13535	0.77	-2.0
3,084,019	-		DDA3937_RS13535	0.77	-0.6
3,084,041	+		DDA3937_RS13535	0.78	-0.8
3,084,065	-		DDA3937_RS13535	0.80	-0.8
3,084,081	+		DDA3937_RS13535	0.81	+0.4
3,084,081	+		DDA3937_RS13535	0.81	-2.0
3,084,081	+				+0.0
3,084,227	+		DDA3937_RS13535	0.89	-0.4
3,084,228	-		DDA3937_RS13535	0.89	+0.0
3,084,231	+		DDA3937_RS13535	0.90	-0.8
3,084,232	-		DDA3937_RS13535	0.90	-1.2
3,084,241	+				+0.5
3,084,241	+				+0.5
3,084,272	-				-0.9
3,084,272	-				-0.5
3,084,293	-				-1.8
3,084,371	-				-2.1
3,084,406	+				-1.5
3,084,407	-				-1.6
3,084,407	-				+2.5
3,084,409	+				+0.6
3,084,409	+				+1.4
3,084,409	+				-0.2
3,084,420	-				+3.0
3,084,420	-				-2.0
3,084,479	-				-1.8
3,084,523	-				+0.6
3,084,523	-				-0.5
3,084,526	-				-1.2
3,084,572	+				-2.0
3,084,572	+				-1.1
3,084,572	+				-2.0
3,084,572	+				-1.4
3,084,601	+		DDA3937_RS13540	0.15	-2.3
3,084,601	+		DDA3937_RS13540	0.15	-1.1
3,084,601	+		DDA3937_RS13540	0.15	-0.3
3,084,601	+		DDA3937_RS13540	0.15	-0.4
3,084,602	-		DDA3937_RS13540	0.16	+0.4
3,084,602	-		DDA3937_RS13540	0.16	+0.2
3,084,602	-		DDA3937_RS13540	0.16	+0.1
3,084,602	-		DDA3937_RS13540	0.16	-0.6
3,084,602	-		DDA3937_RS13540	0.16	-2.5
3,084,602	-		DDA3937_RS13540	0.16	-1.3
3,084,602	-		DDA3937_RS13540	0.16	+1.9
3,084,602	-		DDA3937_RS13540	0.16	-1.1
3,084,634	-		DDA3937_RS13540	0.22	-0.0
3,084,725	-		DDA3937_RS13540	0.40	+1.4
3,084,766	+		DDA3937_RS13540	0.49	-1.2
3,084,766	+		DDA3937_RS13540	0.49	-1.1
3,084,767	-		DDA3937_RS13540	0.49	+1.4
3,084,777	+		DDA3937_RS13540	0.51	-1.6
3,084,778	-		DDA3937_RS13540	0.51	-0.6
3,084,802	+		DDA3937_RS13540	0.56	-2.6
3,084,857	-		DDA3937_RS13540	0.67	-0.3
3,084,859	+		DDA3937_RS13540	0.67	+0.0
3,084,859	+		DDA3937_RS13540	0.67	-1.0
3,084,925	+		DDA3937_RS13540	0.81	-0.5
3,084,936	+		DDA3937_RS13540	0.83	-0.9
3,084,937	-		DDA3937_RS13540	0.83	-1.5
3,084,937	-		DDA3937_RS13540	0.83	-0.4
3,084,977	+				+0.8
3,084,977	+				-0.5
3,084,977	+				-1.4
3,084,977	+				-1.2
3,084,978	-				-0.2
3,084,978	-				-1.6
3,084,978	-				-1.5
3,084,978	-				+0.4
3,084,978	-				-1.4
3,084,978	-				-1.2
3,084,978	-				+0.5
3,085,034	+				-0.1
3,085,035	-				+1.4
3,085,039	+				-2.8
3,085,039	+				-0.6
3,085,039	+				-2.8
3,085,039	+				-1.3
3,085,039	+				-0.6
3,085,039	+				-2.0
3,085,040	-				+0.4
3,085,040	-				-0.6
3,085,040	-				+2.4
3,085,042	-				-0.4
3,085,042	-				-0.4
3,085,042	-				-0.6
3,085,047	+				-0.3
3,085,047	+				-0.8
3,085,048	-				+1.4
3,085,048	-				-0.4
3,085,058	+				-2.1
3,085,058	+				+0.6
3,085,059	-				-2.0
3,085,059	-				-0.7
3,085,059	-				+0.4
3,085,130	-				-0.8
3,085,135	-				-3.0
3,085,181	+				+0.0
3,085,247	+				-1.3
3,085,248	-				+0.0
3,085,328	+		DDA3937_RS13545	0.13	-1.4
3,085,349	+		DDA3937_RS13545	0.14	-1.5
3,085,350	-		DDA3937_RS13545	0.15	-1.0
3,085,394	+		DDA3937_RS13545	0.17	-0.1
3,085,394	+		DDA3937_RS13545	0.17	-2.4
3,085,394	+		DDA3937_RS13545	0.17	-1.2
3,085,394	+		DDA3937_RS13545	0.17	-0.4
3,085,395	-		DDA3937_RS13545	0.17	-1.6
3,085,449	+		DDA3937_RS13545	0.19	+0.5
3,085,449	+		DDA3937_RS13545	0.19	+0.0
3,085,450	-		DDA3937_RS13545	0.19	-2.6
3,085,453	+		DDA3937_RS13545	0.20	+0.4
3,085,453	+		DDA3937_RS13545	0.20	-1.4
3,085,453	+		DDA3937_RS13545	0.20	-0.6
3,085,454	-		DDA3937_RS13545	0.20	-1.1
3,085,454	-		DDA3937_RS13545	0.20	+1.4
3,085,454	-		DDA3937_RS13545	0.20	-0.8
3,085,461	+		DDA3937_RS13545	0.20	-1.5
3,085,462	-		DDA3937_RS13545	0.20	-1.5
3,085,462	-		DDA3937_RS13545	0.20	-1.6
3,085,641	+		DDA3937_RS13545	0.29	-0.4
3,085,734	+		DDA3937_RS13545	0.34	-1.1
3,085,734	+		DDA3937_RS13545	0.34	+1.8
3,085,734	+		DDA3937_RS13545	0.34	-0.0
3,085,734	+		DDA3937_RS13545	0.34	+1.0
3,085,783	-		DDA3937_RS13545	0.36	-1.9
3,085,783	-				+2.4
3,085,783	-		DDA3937_RS13545	0.36	-2.0
3,085,783	-		DDA3937_RS13545	0.36	+1.1
3,085,783	-		DDA3937_RS13545	0.36	-1.2
3,085,783	-		DDA3937_RS13545	0.36	+1.2
3,085,845	+		DDA3937_RS13545	0.39	-1.2
3,085,846	-		DDA3937_RS13545	0.39	+0.8
3,085,912	-		DDA3937_RS13545	0.42	-1.2
3,085,912	-		DDA3937_RS13545	0.42	+0.4