Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13315

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,038,275	+		DDA3937_RS13310	0.34	-1.1
3,038,275	+		DDA3937_RS13310	0.34	-1.1
3,038,300	+		DDA3937_RS13310	0.36	+1.2
3,038,393	+		DDA3937_RS13310	0.45	+0.2
3,038,393	+		DDA3937_RS13310	0.45	-0.1
3,038,461	+		DDA3937_RS13310	0.51	+0.0
3,038,461	+		DDA3937_RS13310	0.51	-0.1
3,038,462	-		DDA3937_RS13310	0.51	-0.5
3,038,462	-		DDA3937_RS13310	0.51	+0.1
3,038,489	+		DDA3937_RS13310	0.54	-0.2
3,038,489	+		DDA3937_RS13310	0.54	+0.6
3,038,489	+		DDA3937_RS13310	0.54	-0.8
3,038,490	-		DDA3937_RS13310	0.54	-0.5
3,038,490	-		DDA3937_RS13310	0.54	+1.1
3,038,609	-		DDA3937_RS13310	0.65	+0.1
3,038,609	-		DDA3937_RS13310	0.65	+0.4
3,038,681	-		DDA3937_RS13310	0.71	-0.9
3,038,757	+		DDA3937_RS13310	0.78	+0.5
3,038,758	-		DDA3937_RS13310	0.79	-0.4
3,038,830	+		DDA3937_RS13310	0.85	-0.2
3,038,830	+		DDA3937_RS13310	0.85	-2.6
3,038,830	+		DDA3937_RS13310	0.85	+2.4
3,038,831	-		DDA3937_RS13310	0.85	+0.1
3,038,899	-				-0.4
3,038,899	-				+3.7
3,038,899	-				+0.4
3,038,902	+				-0.1
3,038,902	+				+0.8
3,038,909	+				-0.3
3,038,910	-				-0.5
3,038,927	+				-1.2
3,039,088	+				-2.3
3,039,097	-				+1.1
3,039,105	+				+1.0
3,039,159	+				+2.2
3,039,184	-				-1.5
3,039,280	-				+0.6
3,039,303	+		DDA3937_RS13315	0.11	+1.8
3,039,303	+		DDA3937_RS13315	0.11	-0.2
3,039,304	-		DDA3937_RS13315	0.11	+0.1
3,039,304	-		DDA3937_RS13315	0.11	+1.0
3,039,304	-		DDA3937_RS13315	0.11	+0.5
3,039,304	-		DDA3937_RS13315	0.11	+0.8
3,039,322	-		DDA3937_RS13315	0.12	-0.1
3,039,324	+		DDA3937_RS13315	0.13	+1.1
3,039,325	-		DDA3937_RS13315	0.13	-0.1
3,039,325	-		DDA3937_RS13315	0.13	-1.2
3,039,325	-		DDA3937_RS13315	0.13	+0.4
3,039,343	+		DDA3937_RS13315	0.14	+0.6
3,039,378	+		DDA3937_RS13315	0.17	+0.6
3,039,378	+		DDA3937_RS13315	0.17	+1.8
3,039,378	+		DDA3937_RS13315	0.17	+1.5
3,039,378	+		DDA3937_RS13315	0.17	+0.1
3,039,379	-		DDA3937_RS13315	0.17	+0.9
3,039,379	-		DDA3937_RS13315	0.17	-0.2
3,039,379	-		DDA3937_RS13315	0.17	+1.1
3,039,379	-		DDA3937_RS13315	0.17	-0.0
3,039,379	-		DDA3937_RS13315	0.17	+0.0
3,039,379	-		DDA3937_RS13315	0.17	-1.5
3,039,379	-		DDA3937_RS13315	0.17	-1.1
3,039,446	-		DDA3937_RS13315	0.23	+0.0
3,039,555	+		DDA3937_RS13315	0.33	+1.6
3,039,555	+		DDA3937_RS13315	0.33	+0.5
3,039,555	+		DDA3937_RS13315	0.33	+2.3
3,039,555	+		DDA3937_RS13315	0.33	+0.6
3,039,562	-				-0.2
3,039,562	-		DDA3937_RS13315	0.34	+0.7
3,039,652	-				+1.4
3,039,653	+		DDA3937_RS13315	0.42	-1.2
3,039,653	+		DDA3937_RS13315	0.42	+0.5
3,039,653	+		DDA3937_RS13315	0.42	+0.1
3,039,653	+		DDA3937_RS13315	0.42	+0.4
3,039,653	+		DDA3937_RS13315	0.42	+2.8
3,039,653	+		DDA3937_RS13315	0.42	-1.0
3,039,653	+		DDA3937_RS13315	0.42	+0.5
3,039,653	+		DDA3937_RS13315	0.42	+0.2
3,039,653	+		DDA3937_RS13315	0.42	+0.8
3,039,653	+		DDA3937_RS13315	0.42	+0.3
3,039,653	+		DDA3937_RS13315	0.42	-0.8
3,039,653	+		DDA3937_RS13315	0.42	+0.1
3,039,653	+		DDA3937_RS13315	0.42	-0.9
3,039,653	+		DDA3937_RS13315	0.42	+1.6
3,039,653	+		DDA3937_RS13315	0.42	+0.8
3,039,654	-		DDA3937_RS13315	0.42	-1.7
3,039,654	-		DDA3937_RS13315	0.42	-1.3
3,039,654	-		DDA3937_RS13315	0.42	-1.5
3,039,654	-		DDA3937_RS13315	0.42	-1.0
3,039,654	-		DDA3937_RS13315	0.42	-1.3
3,039,654	-		DDA3937_RS13315	0.42	-0.2
3,039,654	-		DDA3937_RS13315	0.42	-0.8
3,039,654	-		DDA3937_RS13315	0.42	+0.2
3,039,654	-		DDA3937_RS13315	0.42	-0.8
3,039,654	-		DDA3937_RS13315	0.42	-0.3
3,039,681	+		DDA3937_RS13315	0.44	+0.1
3,039,681	+		DDA3937_RS13315	0.44	-1.2
3,039,681	+		DDA3937_RS13315	0.44	-2.7
3,039,681	+		DDA3937_RS13315	0.44	-1.5
3,039,681	+		DDA3937_RS13315	0.44	-0.0
3,039,681	+		DDA3937_RS13315	0.44	+0.9
3,039,682	-		DDA3937_RS13315	0.44	-0.1
3,039,682	-		DDA3937_RS13315	0.44	+2.4
3,039,682	-		DDA3937_RS13315	0.44	-0.3
3,039,897	+		DDA3937_RS13315	0.63	+0.8
3,040,036	+		DDA3937_RS13315	0.75	+0.1
3,040,078	+		DDA3937_RS13315	0.79	+0.3
3,040,232	-				+1.9
3,040,255	+				+0.8
3,040,255	+				+0.0
3,040,255	+				+1.4
3,040,256	-				+1.5
3,040,256	-				-1.8
3,040,305	-				+0.7
3,040,392	+				-0.1
3,040,393	-				+0.2
3,040,407	+				+0.4
3,040,407	+				+0.4
3,040,407	+				-0.6
3,040,408	-				+0.4
3,040,408	-				+0.9
3,040,408	-				-0.8
3,040,408	-				+0.7
3,040,483	+		DDA3937_RS13320	0.14	+1.4
3,040,548	+		DDA3937_RS13320	0.20	+0.1
3,040,548	+		DDA3937_RS13320	0.20	-0.2
3,040,548	+		DDA3937_RS13320	0.20	+1.2
3,040,549	-		DDA3937_RS13320	0.20	+0.5
3,040,549	-		DDA3937_RS13320	0.20	+0.6
3,040,549	-		DDA3937_RS13320	0.20	+1.8
3,040,549	-		DDA3937_RS13320	0.20	+2.6
3,040,558	+		DDA3937_RS13320	0.21	+1.3
3,040,558	+		DDA3937_RS13320	0.21	+1.4
3,040,558	+		DDA3937_RS13320	0.21	+0.1
3,040,558	+		DDA3937_RS13320	0.21	+3.0
3,040,562	+		DDA3937_RS13320	0.21	+1.6
3,040,562	+		DDA3937_RS13320	0.21	+0.1
3,040,562	+		DDA3937_RS13320	0.21	-0.5
3,040,562	+		DDA3937_RS13320	0.21	+0.4
3,040,562	+		DDA3937_RS13320	0.21	+0.1
3,040,562	+		DDA3937_RS13320	0.21	-1.0
3,040,563	-		DDA3937_RS13320	0.21	-0.2
3,040,563	-		DDA3937_RS13320	0.21	+1.2
3,040,563	-		DDA3937_RS13320	0.21	+0.1
3,040,563	-		DDA3937_RS13320	0.21	+0.6
3,040,629	-		DDA3937_RS13320	0.27	+0.8
3,040,629	-		DDA3937_RS13320	0.27	+1.0
3,040,674	-		DDA3937_RS13320	0.31	+3.8
3,040,675	+		DDA3937_RS13320	0.31	+2.4
3,040,675	+		DDA3937_RS13320	0.31	+1.1
3,040,675	+		DDA3937_RS13320	0.31	+0.8
3,040,675	+		DDA3937_RS13320	0.31	+0.1
3,040,675	+		DDA3937_RS13320	0.31	-1.0
3,040,675	+		DDA3937_RS13320	0.31	+0.8
3,040,675	+		DDA3937_RS13320	0.31	+2.0
3,040,675	+		DDA3937_RS13320	0.31	+1.0
3,040,676	-		DDA3937_RS13320	0.31	-0.6
3,040,676	-		DDA3937_RS13320	0.31	+1.2
3,040,676	-		DDA3937_RS13320	0.31	+2.9
3,040,734	+		DDA3937_RS13320	0.36	+1.8
3,040,762	+		DDA3937_RS13320	0.38	+1.4
3,040,762	+		DDA3937_RS13320	0.38	+1.4
3,040,762	+		DDA3937_RS13320	0.38	+1.7
3,040,763	-		DDA3937_RS13320	0.38	-0.1
3,040,763	-		DDA3937_RS13320	0.38	+0.8
3,040,763	-		DDA3937_RS13320	0.38	+1.0
3,040,763	-		DDA3937_RS13320	0.38	+3.1
3,040,782	+		DDA3937_RS13320	0.40	-2.5
3,040,782	+		DDA3937_RS13320	0.40	-2.2
3,040,782	+		DDA3937_RS13320	0.40	+1.3
3,040,782	+		DDA3937_RS13320	0.40	+1.0
3,040,783	-		DDA3937_RS13320	0.40	-1.9
3,040,783	-		DDA3937_RS13320	0.40	-0.2
3,040,783	-		DDA3937_RS13320	0.40	-0.0
3,040,848	+		DDA3937_RS13320	0.45	-1.2
3,040,849	-		DDA3937_RS13320	0.45	+0.8
3,040,865	+		DDA3937_RS13320	0.47	-2.7
3,040,877	+		DDA3937_RS13320	0.48	+0.7
3,040,920	+		DDA3937_RS13320	0.51	+2.2
3,040,920	+		DDA3937_RS13320	0.51	+1.1
3,040,963	+		DDA3937_RS13320	0.55	+3.5
3,040,963	+		DDA3937_RS13320	0.55	-1.3
3,040,964	-		DDA3937_RS13320	0.55	+1.1
3,040,964	-		DDA3937_RS13320	0.55	-0.6
3,040,964	-		DDA3937_RS13320	0.55	-0.8
3,041,006	+		DDA3937_RS13320	0.59	-1.1
3,041,006	+		DDA3937_RS13320	0.59	+2.8
3,041,043	+		DDA3937_RS13320	0.62	+0.5
3,041,044	-		DDA3937_RS13320	0.62	+0.4
3,041,046	+		DDA3937_RS13320	0.62	+1.1
3,041,060	+		DDA3937_RS13320	0.63	+0.7
3,041,060	+		DDA3937_RS13320	0.63	+0.8
3,041,060	+		DDA3937_RS13320	0.63	+3.6
3,041,060	+		DDA3937_RS13320	0.63	+2.0
3,041,060	+		DDA3937_RS13320	0.63	+0.3
3,041,060	+				-0.6
3,041,060	+		DDA3937_RS13320	0.63	+1.0
3,041,060	+		DDA3937_RS13320	0.63	+0.5
3,041,060	+		DDA3937_RS13320	0.63	+1.6
3,041,061	-		DDA3937_RS13320	0.63	-0.8
3,041,061	-		DDA3937_RS13320	0.63	+0.1
3,041,061	-		DDA3937_RS13320	0.63	+0.8
3,041,122	+		DDA3937_RS13320	0.69	+1.7
3,041,149	-		DDA3937_RS13320	0.71	+0.9
3,041,149	-		DDA3937_RS13320	0.71	-0.6
3,041,149	-		DDA3937_RS13320	0.71	+2.0
3,041,159	+				-1.0
3,041,160	-		DDA3937_RS13320	0.72	+0.5
3,041,160	-		DDA3937_RS13320	0.72	+1.1
3,041,223	+		DDA3937_RS13320	0.77	+1.1
3,041,259	-		DDA3937_RS13320	0.80	+0.5
3,041,287	-		DDA3937_RS13320	0.82	+0.8
3,041,287	-		DDA3937_RS13320	0.82	+1.9
3,041,295	+		DDA3937_RS13320	0.83	-0.5
3,041,296	-		DDA3937_RS13320	0.83	+0.4
3,041,296	-		DDA3937_RS13320	0.83	+0.9