Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13310

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,037,032	+		DDA3937_RS13305	0.46	-3.6
3,037,059	+		DDA3937_RS13305	0.48	-0.6
3,037,062	+		DDA3937_RS13305	0.48	-0.1
3,037,063	-		DDA3937_RS13305	0.48	-0.6
3,037,066	+		DDA3937_RS13305	0.48	+1.4
3,037,086	-		DDA3937_RS13305	0.50	-1.6
3,037,185	+		DDA3937_RS13305	0.57	-0.6
3,037,302	+		DDA3937_RS13305	0.65	-1.2
3,037,452	+		DDA3937_RS13305	0.75	+0.6
3,037,479	-		DDA3937_RS13305	0.77	-0.4
3,037,491	+		DDA3937_RS13305	0.78	+0.1
3,037,525	+		DDA3937_RS13305	0.81	-0.7
3,037,525	+		DDA3937_RS13305	0.81	+0.1
3,037,525	+		DDA3937_RS13305	0.81	-0.2
3,037,567	+		DDA3937_RS13305	0.84	+0.9
3,037,567	+		DDA3937_RS13305	0.84	-1.0
3,037,663	-				+0.0
3,037,679	-				-0.4
3,037,764	+				-0.8
3,037,764	+				-0.9
3,037,781	+				+0.4
3,037,782	-				-1.2
3,037,791	+				-0.5
3,037,802	-				-1.6
3,037,826	+				+0.7
3,037,855	+				-0.1
3,037,855	+				+0.4
3,037,855	+				+0.1
3,037,855	+				-1.2
3,037,856	-				+0.4
3,037,856	-				+0.8
3,037,856	-				-1.4
3,037,856	-				-1.0
3,037,903	+				+0.4
3,037,903	+				-1.0
3,037,904	-				+0.2
3,037,904	-				+3.4
3,037,955	+				+0.1
3,037,957	+				-0.9
3,037,958	-				+0.1
3,037,958	-				-0.6
3,037,958	-				+1.3
3,037,969	+				+0.0
3,038,001	-				+0.2
3,038,002	+				+1.0
3,038,003	-				-0.1
3,038,003	-				-0.6
3,038,003	-				+2.4
3,038,003	-				-0.8
3,038,038	+		DDA3937_RS13310	0.12	-1.2
3,038,076	-		DDA3937_RS13310	0.16	+0.1
3,038,076	-		DDA3937_RS13310	0.16	+0.9
3,038,138	+		DDA3937_RS13310	0.21	+0.1
3,038,154	+		DDA3937_RS13310	0.23	+1.0
3,038,154	+		DDA3937_RS13310	0.23	+0.5
3,038,275	+		DDA3937_RS13310	0.34	-1.1
3,038,275	+		DDA3937_RS13310	0.34	-1.1
3,038,300	+		DDA3937_RS13310	0.36	+1.2
3,038,393	+		DDA3937_RS13310	0.45	+0.2
3,038,393	+		DDA3937_RS13310	0.45	-0.1
3,038,461	+		DDA3937_RS13310	0.51	+0.0
3,038,461	+		DDA3937_RS13310	0.51	-0.1
3,038,462	-		DDA3937_RS13310	0.51	-0.5
3,038,462	-		DDA3937_RS13310	0.51	+0.1
3,038,489	+		DDA3937_RS13310	0.54	-0.2
3,038,489	+		DDA3937_RS13310	0.54	+0.6
3,038,489	+		DDA3937_RS13310	0.54	-0.8
3,038,490	-		DDA3937_RS13310	0.54	-0.5
3,038,490	-		DDA3937_RS13310	0.54	+1.1
3,038,609	-		DDA3937_RS13310	0.65	+0.1
3,038,609	-		DDA3937_RS13310	0.65	+0.4
3,038,681	-		DDA3937_RS13310	0.71	-0.9
3,038,757	+		DDA3937_RS13310	0.78	+0.5
3,038,758	-		DDA3937_RS13310	0.79	-0.4
3,038,830	+		DDA3937_RS13310	0.85	-0.2
3,038,830	+		DDA3937_RS13310	0.85	-2.6
3,038,830	+		DDA3937_RS13310	0.85	+2.4
3,038,831	-		DDA3937_RS13310	0.85	+0.1
3,038,899	-				-0.4
3,038,899	-				+3.7
3,038,899	-				+0.4
3,038,902	+				-0.1
3,038,902	+				+0.8
3,038,909	+				-0.3
3,038,910	-				-0.5
3,038,927	+				-1.2
3,039,088	+				-2.3
3,039,097	-				+1.1
3,039,105	+				+1.0
3,039,159	+				+2.2
3,039,184	-				-1.5
3,039,280	-				+0.6
3,039,303	+		DDA3937_RS13315	0.11	+1.8
3,039,303	+		DDA3937_RS13315	0.11	-0.2
3,039,304	-		DDA3937_RS13315	0.11	+0.1
3,039,304	-		DDA3937_RS13315	0.11	+1.0
3,039,304	-		DDA3937_RS13315	0.11	+0.5
3,039,304	-		DDA3937_RS13315	0.11	+0.8
3,039,322	-		DDA3937_RS13315	0.12	-0.1
3,039,324	+		DDA3937_RS13315	0.13	+1.1
3,039,325	-		DDA3937_RS13315	0.13	-0.1
3,039,325	-		DDA3937_RS13315	0.13	-1.2
3,039,325	-		DDA3937_RS13315	0.13	+0.4
3,039,343	+		DDA3937_RS13315	0.14	+0.6
3,039,378	+		DDA3937_RS13315	0.17	+0.6
3,039,378	+		DDA3937_RS13315	0.17	+1.8
3,039,378	+		DDA3937_RS13315	0.17	+1.5
3,039,378	+		DDA3937_RS13315	0.17	+0.1
3,039,379	-		DDA3937_RS13315	0.17	+0.9
3,039,379	-		DDA3937_RS13315	0.17	-0.2
3,039,379	-		DDA3937_RS13315	0.17	+1.1
3,039,379	-		DDA3937_RS13315	0.17	-0.0
3,039,379	-		DDA3937_RS13315	0.17	+0.0
3,039,379	-		DDA3937_RS13315	0.17	-1.5
3,039,379	-		DDA3937_RS13315	0.17	-1.1
3,039,446	-		DDA3937_RS13315	0.23	+0.0
3,039,555	+		DDA3937_RS13315	0.33	+1.6
3,039,555	+		DDA3937_RS13315	0.33	+0.5
3,039,555	+		DDA3937_RS13315	0.33	+2.3
3,039,555	+		DDA3937_RS13315	0.33	+0.6
3,039,562	-				-0.2
3,039,562	-		DDA3937_RS13315	0.34	+0.7
3,039,652	-				+1.4
3,039,653	+		DDA3937_RS13315	0.42	-1.2
3,039,653	+		DDA3937_RS13315	0.42	+0.5
3,039,653	+		DDA3937_RS13315	0.42	+0.1
3,039,653	+		DDA3937_RS13315	0.42	+0.4
3,039,653	+		DDA3937_RS13315	0.42	+2.8
3,039,653	+		DDA3937_RS13315	0.42	-1.0
3,039,653	+		DDA3937_RS13315	0.42	+0.5
3,039,653	+		DDA3937_RS13315	0.42	+0.2
3,039,653	+		DDA3937_RS13315	0.42	+0.8
3,039,653	+		DDA3937_RS13315	0.42	+0.3
3,039,653	+		DDA3937_RS13315	0.42	-0.8
3,039,653	+		DDA3937_RS13315	0.42	+0.1
3,039,653	+		DDA3937_RS13315	0.42	-0.9
3,039,653	+		DDA3937_RS13315	0.42	+1.6
3,039,653	+		DDA3937_RS13315	0.42	+0.8
3,039,654	-		DDA3937_RS13315	0.42	-1.7
3,039,654	-		DDA3937_RS13315	0.42	-1.3
3,039,654	-		DDA3937_RS13315	0.42	-1.5
3,039,654	-		DDA3937_RS13315	0.42	-1.0
3,039,654	-		DDA3937_RS13315	0.42	-1.3
3,039,654	-		DDA3937_RS13315	0.42	-0.2
3,039,654	-		DDA3937_RS13315	0.42	-0.8
3,039,654	-		DDA3937_RS13315	0.42	+0.2
3,039,654	-		DDA3937_RS13315	0.42	-0.8
3,039,654	-		DDA3937_RS13315	0.42	-0.3
3,039,681	+		DDA3937_RS13315	0.44	+0.1
3,039,681	+		DDA3937_RS13315	0.44	-1.2
3,039,681	+		DDA3937_RS13315	0.44	-2.7
3,039,681	+		DDA3937_RS13315	0.44	-1.5
3,039,681	+		DDA3937_RS13315	0.44	-0.0
3,039,681	+		DDA3937_RS13315	0.44	+0.9
3,039,682	-		DDA3937_RS13315	0.44	-0.1
3,039,682	-		DDA3937_RS13315	0.44	+2.4
3,039,682	-		DDA3937_RS13315	0.44	-0.3
3,039,897	+		DDA3937_RS13315	0.63	+0.8