Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12905

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,942,946	+		DDA3937_RS12900	0.64	-2.4
2,942,947	-		DDA3937_RS12900	0.64	-1.0
2,942,964	+		DDA3937_RS12900	0.66	-0.3
2,942,964	+		DDA3937_RS12900	0.66	-1.7
2,942,964	+		DDA3937_RS12900	0.66	+0.3
2,942,964	+		DDA3937_RS12900	0.66	+7.8
2,942,964	+		DDA3937_RS12900	0.66	-0.4
2,942,965	-		DDA3937_RS12900	0.66	-1.9
2,942,965	-		DDA3937_RS12900	0.66	-1.5
2,942,979	+		DDA3937_RS12900	0.67	-2.3
2,942,980	-		DDA3937_RS12900	0.67	-1.2
2,943,003	+		DDA3937_RS12900	0.69	-0.7
2,943,003	+		DDA3937_RS12900	0.69	-0.1
2,943,003	+		DDA3937_RS12900	0.69	-0.4
2,943,003	+		DDA3937_RS12900	0.69	-0.0
2,943,003	+		DDA3937_RS12900	0.69	-3.1
2,943,003	+		DDA3937_RS12900	0.69	-2.7
2,943,004	-		DDA3937_RS12900	0.69	-2.2
2,943,004	-		DDA3937_RS12900	0.69	-1.7
2,943,004	-		DDA3937_RS12900	0.69	-1.4
2,943,005	+		DDA3937_RS12900	0.69	-3.0
2,943,006	-		DDA3937_RS12900	0.69	-0.5
2,943,006	-		DDA3937_RS12900	0.69	-1.9
2,943,006	-		DDA3937_RS12900	0.69	-0.5
2,943,038	+		DDA3937_RS12900	0.72	-2.2
2,943,038	+		DDA3937_RS12900	0.72	-2.0
2,943,128	+		DDA3937_RS12900	0.81	+1.3
2,943,135	+		DDA3937_RS12900	0.81	-1.6
2,943,135	+		DDA3937_RS12900	0.81	-0.9
2,943,135	+		DDA3937_RS12900	0.81	+0.7
2,943,135	+		DDA3937_RS12900	0.81	-1.5
2,943,136	-		DDA3937_RS12900	0.81	+0.3
2,943,136	-		DDA3937_RS12900	0.81	-1.4
2,943,161	+		DDA3937_RS12900	0.84	-2.6
2,943,161	+		DDA3937_RS12900	0.84	-3.7
2,943,161	+		DDA3937_RS12900	0.84	-1.6
2,943,162	-		DDA3937_RS12900	0.84	-1.5
2,943,186	+		DDA3937_RS12900	0.86	-1.4
2,943,186	+		DDA3937_RS12900	0.86	-0.2
2,943,187	-		DDA3937_RS12900	0.86	-1.9
2,943,187	-		DDA3937_RS12900	0.86	+1.9
2,943,198	+		DDA3937_RS12900	0.87	-2.6
2,943,198	+		DDA3937_RS12900	0.87	-2.0
2,943,198	+		DDA3937_RS12900	0.87	+0.0
2,943,199	-		DDA3937_RS12900	0.87	-2.4
2,943,199	-		DDA3937_RS12900	0.87	-1.2
2,943,199	-		DDA3937_RS12900	0.87	+0.3
2,943,199	-		DDA3937_RS12900	0.87	-2.2
2,943,204	-		DDA3937_RS12900	0.87	-1.3
2,943,208	+				-1.0
2,943,209	-		DDA3937_RS12900	0.88	-1.3
2,943,212	+		DDA3937_RS12900	0.88	-1.4
2,943,213	-		DDA3937_RS12900	0.88	-3.3
2,943,219	+		DDA3937_RS12900	0.89	-0.4
2,943,220	-		DDA3937_RS12900	0.89	-0.4
2,943,220	-		DDA3937_RS12900	0.89	-0.3
2,943,220	-		DDA3937_RS12900	0.89	-3.7
2,943,227	+		DDA3937_RS12900	0.90	-1.0
2,943,227	+		DDA3937_RS12900	0.90	-1.9
2,943,227	+		DDA3937_RS12900	0.90	-1.2
2,943,228	-		DDA3937_RS12900	0.90	-1.9
2,943,230	+		DDA3937_RS12900	0.90	-2.8
2,943,230	+		DDA3937_RS12900	0.90	+0.3
2,943,231	-		DDA3937_RS12900	0.90	-0.3
2,943,242	+				-0.9
2,943,247	-				-2.4
2,943,282	-				-0.3
2,943,325	+				+0.3
2,943,325	+				-1.8
2,943,326	-				-0.6
2,943,339	+				-1.0
2,943,348	+				-2.3
2,943,349	-				-0.9
2,943,368	+				-1.4
2,943,368	+				-1.3
2,943,368	+				+0.1
2,943,369	-				-2.4
2,943,369	-				-0.7
2,943,389	-				-1.0
2,943,392	+				-2.0
2,943,392	+				-0.3
2,943,392	+				+0.3
2,943,409	+				+1.1
2,943,445	+				-0.1
2,943,445	+				+0.9
2,943,454	+				-0.7
2,943,458	+				-0.3
2,943,479	-				-1.9
2,943,501	-				-0.8
2,943,580	-				+0.6
2,943,627	+				-0.8
2,943,627	+				+1.4
2,943,641	-				-0.9
2,943,738	-				-1.9
2,943,747	-				-1.7
2,943,802	+				-0.7
2,943,802	+				-0.1
2,943,802	+				+1.0
2,943,803	-				-2.0
2,943,803	-				-0.5
2,943,803	-				+0.1
2,943,836	-				-1.2
2,943,851	-				-0.3
2,943,851	-				-0.9
2,943,851	-				-0.8
2,943,866	+				-3.1
2,943,888	+				-0.3
2,943,889	-				+0.3
2,943,949	+				-1.0
2,944,003	+		DDA3937_RS12905	0.11	-0.7
2,944,003	+		DDA3937_RS12905	0.11	-0.7
2,944,004	-		DDA3937_RS12905	0.12	+0.0
2,944,004	-		DDA3937_RS12905	0.12	-0.2
2,944,042	+		DDA3937_RS12905	0.15	-0.7
2,944,106	+		DDA3937_RS12905	0.21	-0.1
2,944,112	-		DDA3937_RS12905	0.21	-1.4
2,944,140	+				-0.7
2,944,140	+		DDA3937_RS12905	0.24	+0.4
2,944,140	+		DDA3937_RS12905	0.24	-1.0
2,944,140	+		DDA3937_RS12905	0.24	+0.1
2,944,140	+		DDA3937_RS12905	0.24	-0.4
2,944,141	-		DDA3937_RS12905	0.24	-0.9
2,944,141	-		DDA3937_RS12905	0.24	-1.3
2,944,158	+		DDA3937_RS12905	0.25	-0.8
2,944,159	-		DDA3937_RS12905	0.26	-1.1
2,944,159	-		DDA3937_RS12905	0.26	-2.3
2,944,174	+		DDA3937_RS12905	0.27	-0.3
2,944,175	-		DDA3937_RS12905	0.27	-1.6
2,944,214	-		DDA3937_RS12905	0.31	-1.2
2,944,237	+		DDA3937_RS12905	0.33	-1.4
2,944,245	+		DDA3937_RS12905	0.33	+0.8
2,944,252	+		DDA3937_RS12905	0.34	+1.4
2,944,252	+		DDA3937_RS12905	0.34	+0.1
2,944,253	-		DDA3937_RS12905	0.34	-2.5
2,944,253	-		DDA3937_RS12905	0.34	-0.5
2,944,254	+		DDA3937_RS12905	0.34	-0.5
2,944,291	+		DDA3937_RS12905	0.38	+1.3
2,944,291	+		DDA3937_RS12905	0.38	-1.9
2,944,305	+		DDA3937_RS12905	0.39	-1.7
2,944,314	+		DDA3937_RS12905	0.40	-0.3
2,944,314	+		DDA3937_RS12905	0.40	-1.7
2,944,314	+		DDA3937_RS12905	0.40	+0.3
2,944,315	-		DDA3937_RS12905	0.40	+0.3
2,944,315	-		DDA3937_RS12905	0.40	+0.1
2,944,338	+		DDA3937_RS12905	0.42	-2.0
2,944,338	+		DDA3937_RS12905	0.42	-1.3
2,944,338	+		DDA3937_RS12905	0.42	+0.6
2,944,339	-		DDA3937_RS12905	0.42	-1.2
2,944,387	+		DDA3937_RS12905	0.46	-0.3
2,944,388	-		DDA3937_RS12905	0.46	-0.7
2,944,401	+		DDA3937_RS12905	0.47	+0.8
2,944,401	+		DDA3937_RS12905	0.47	-1.5
2,944,401	+		DDA3937_RS12905	0.47	-2.0
2,944,401	+		DDA3937_RS12905	0.47	+0.7
2,944,401	+		DDA3937_RS12905	0.47	+0.8
2,944,402	-		DDA3937_RS12905	0.48	+0.8
2,944,402	-		DDA3937_RS12905	0.48	-0.7
2,944,402	-		DDA3937_RS12905	0.48	-1.3
2,944,414	-		DDA3937_RS12905	0.49	-1.3
2,944,448	+		DDA3937_RS12905	0.52	-1.0
2,944,448	+		DDA3937_RS12905	0.52	-1.7
2,944,452	+		DDA3937_RS12905	0.52	+0.7
2,944,452	+		DDA3937_RS12905	0.52	-1.1
2,944,452	+		DDA3937_RS12905	0.52	-0.2
2,944,452	+		DDA3937_RS12905	0.52	-1.5
2,944,453	-		DDA3937_RS12905	0.52	-2.0
2,944,453	-		DDA3937_RS12905	0.52	-0.6
2,944,459	+		DDA3937_RS12905	0.53	+0.3
2,944,459	+		DDA3937_RS12905	0.53	-0.0
2,944,459	+		DDA3937_RS12905	0.53	-0.3
2,944,459	+		DDA3937_RS12905	0.53	-1.5
2,944,460	-		DDA3937_RS12905	0.53	-1.3
2,944,461	+		DDA3937_RS12905	0.53	-2.2
2,944,461	+		DDA3937_RS12905	0.53	+0.2
2,944,461	+				-0.7
2,944,461	+		DDA3937_RS12905	0.53	+2.3
2,944,461	+		DDA3937_RS12905	0.53	+0.4
2,944,461	+		DDA3937_RS12905	0.53	-0.2
2,944,461	+		DDA3937_RS12905	0.53	-2.0
2,944,461	+		DDA3937_RS12905	0.53	+0.0
2,944,462	-		DDA3937_RS12905	0.53	+2.0
2,944,462	-		DDA3937_RS12905	0.53	-0.2
2,944,462	-		DDA3937_RS12905	0.53	-0.1
2,944,462	-		DDA3937_RS12905	0.53	-2.0
2,944,462	-		DDA3937_RS12905	0.53	+0.1
2,944,495	+		DDA3937_RS12905	0.56	+0.3
2,944,495	+		DDA3937_RS12905	0.56	-0.9
2,944,496	-		DDA3937_RS12905	0.56	+0.9
2,944,506	+		DDA3937_RS12905	0.57	-0.1
2,944,507	-		DDA3937_RS12905	0.57	+0.3
2,944,538	+		DDA3937_RS12905	0.60	-0.7
2,944,538	+		DDA3937_RS12905	0.60	-1.3
2,944,539	-		DDA3937_RS12905	0.60	+0.1
2,944,539	-		DDA3937_RS12905	0.60	-1.0
2,944,591	+		DDA3937_RS12905	0.65	-1.3
2,944,609	+		DDA3937_RS12905	0.66	-0.0
2,944,609	+		DDA3937_RS12905	0.66	-1.2
2,944,609	+		DDA3937_RS12905	0.66	-0.7
2,944,609	+		DDA3937_RS12905	0.66	+2.0
2,944,609	+		DDA3937_RS12905	0.66	+0.0
2,944,610	-		DDA3937_RS12905	0.66	+0.1
2,944,610	-		DDA3937_RS12905	0.66	-0.8
2,944,624	+		DDA3937_RS12905	0.68	-0.7
2,944,625	-		DDA3937_RS12905	0.68	-0.6
2,944,625	-		DDA3937_RS12905	0.68	-0.2
2,944,634	-		DDA3937_RS12905	0.69	-0.7
2,944,634	-		DDA3937_RS12905	0.69	-0.7
2,944,648	+		DDA3937_RS12905	0.70	+0.9
2,944,648	+		DDA3937_RS12905	0.70	-1.7
2,944,648	+				+2.3
2,944,649	-		DDA3937_RS12905	0.70	-0.3
2,944,649	-		DDA3937_RS12905	0.70	+0.4
2,944,649	-		DDA3937_RS12905	0.70	-0.5
2,944,767	+		DDA3937_RS12905	0.81	+3.1
2,944,774	+		DDA3937_RS12905	0.81	-1.1
2,944,786	-		DDA3937_RS12905	0.82	-1.2
2,944,801	-		DDA3937_RS12905	0.84	-0.3
2,944,801	-		DDA3937_RS12905	0.84	-1.4
2,944,801	-		DDA3937_RS12905	0.84	-1.0
2,944,825	+		DDA3937_RS12905	0.86	-1.5
2,944,825	+		DDA3937_RS12905	0.86	+2.6
2,944,826	-		DDA3937_RS12905	0.86	-0.4
2,944,826	-		DDA3937_RS12905	0.86	-0.7
2,944,837	+				+0.7
2,944,837	+		DDA3937_RS12905	0.87	-0.7
2,944,838	-		DDA3937_RS12905	0.87	-0.3
2,944,846	+		DDA3937_RS12905	0.88	-2.4
2,944,846	+		DDA3937_RS12905	0.88	+1.0
2,944,846	+		DDA3937_RS12905	0.88	-0.8
2,944,846	+		DDA3937_RS12905	0.88	+0.1
2,944,847	-		DDA3937_RS12905	0.88	-0.8
2,944,847	-		DDA3937_RS12905	0.88	+0.8
2,944,847	-		DDA3937_RS12905	0.88	-0.6
2,944,847	-		DDA3937_RS12905	0.88	-0.9
2,944,858	+		DDA3937_RS12905	0.89	-1.3
2,944,859	-		DDA3937_RS12905	0.89	-0.1
2,944,869	+		DDA3937_RS12905	0.90	-0.0
2,944,869	+		DDA3937_RS12905	0.90	+0.5
2,944,885	+				-0.5
2,944,885	+				+1.6
2,944,886	-				-1.7
2,944,887	+				-0.5
2,944,887	+				-2.5
2,944,887	+				-1.0
2,944,887	+				-1.0
2,944,888	-				-1.0
2,944,894	+				+0.5
2,944,895	-				-0.7
2,944,895	-				+1.1
2,944,895	-				+0.5
2,944,895	-				-0.3
2,944,917	+				-0.0
2,944,918	-				-0.8
2,944,928	-				-1.7
2,944,928	-				-1.2
2,944,959	-				-1.3
2,944,959	-				-0.4
2,944,959	-				-1.8
2,944,959	-				-2.5
2,944,962	+				-2.3
2,944,962	+				-0.7
2,944,962	+				+0.6
2,944,962	+				-1.2
2,944,963	-				+0.3
2,944,969	+				+0.4
2,944,978	+				+2.7
2,944,979	-				-1.7
2,944,979	-				+1.8
2,944,983	+				-2.7
2,944,983	+				+0.6
2,944,983	+				-1.5
2,944,983	+				+0.9
2,944,983	+				-0.9
2,944,983	+				-0.7
2,944,986	+				+0.3
2,944,986	+				-1.3
2,944,986	+				-0.7
2,944,987	-				+0.4
2,945,001	+				-0.0
2,945,001	+				-0.6
2,945,002	-				+0.3
2,945,005	+				-1.9
2,945,005	+				+0.1
2,945,005	+				-3.8
2,945,006	-				-1.7
2,945,006	-				+0.3
2,945,006	-				-1.5
2,945,006	-				-1.2
2,945,006	-				-0.8
2,945,024	+				-1.4
2,945,026	-				-1.3
2,945,085	+				-0.7
2,945,135	+				+0.0
2,945,135	+				-0.7
2,945,154	+				+1.9
2,945,196	+				-1.5
2,945,196	+				-1.0
2,945,198	+				-2.4
2,945,199	-				-0.7
2,945,229	+				-0.2
2,945,230	-				-1.3
2,945,238	+				-1.0
2,945,238	+				+0.1
2,945,239	-				+0.0
2,945,264	+				+0.6
2,945,265	-				+1.5
2,945,265	-				-1.2
2,945,312	+				+0.1
2,945,312	+				+0.6
2,945,331	+				+0.1
2,945,332	-				-0.7
2,945,335	+				+0.1
2,945,335	+				-1.4
2,945,335	+				-1.2
2,945,335	+				-0.1
2,945,336	-				+1.3
2,945,336	-				-1.9
2,945,336	-				-3.3
2,945,336	-				-0.8
2,945,364	-				-1.0
2,945,368	+				-1.6
2,945,368	+				-1.1
2,945,368	+				+0.3
2,945,369	-				+0.7
2,945,369	-				-0.7
2,945,369	-				-0.9
2,945,394	-				-1.3
2,945,448	+				-0.6
2,945,490	+				+0.5
2,945,490	+				-1.8
2,945,490	+				-1.5
2,945,494	+				-1.3
2,945,495	-				-0.9
2,945,495	-				+0.3
2,945,499	+				-1.0
2,945,499	+				-0.8
2,945,500	-				+3.7
2,945,500	-				-1.0
2,945,502	+				-0.9
2,945,508	+				-1.3
2,945,508	+				-1.2
2,945,605	+				+0.8
2,945,652	+				-1.7
2,945,652	+				+0.5
2,945,652	+				+1.3
2,945,653	-				-0.1
2,945,658	+				+0.7
2,945,711	-				-0.2
2,945,812	-				-0.0
2,945,834	-				+0.3
2,945,858	+				-1.1
2,945,921	+				-0.5
2,945,921	+				-0.9
2,945,922	-				-0.7
2,945,962	+				-0.3
2,945,962	+				-0.1
2,945,963	-				-0.2