Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11095

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,507,514	+				-0.0
2,507,515	-				-1.4
2,507,515	-				+0.0
2,507,597	+				+1.3
2,507,635	-				+0.5
2,507,635	-				-0.3
2,507,698	+				+2.8
2,507,706	+				-0.0
2,507,707	-				-0.9
2,507,707	-				+0.9
2,507,778	+				-0.4
2,507,778	+				-0.7
2,507,886	-		DDA3937_RS11090	0.15	+0.6
2,507,905	-		DDA3937_RS11090	0.19	+0.1
2,507,963	+		DDA3937_RS11090	0.31	-1.0
2,507,964	-		DDA3937_RS11090	0.31	-0.7
2,507,964	-		DDA3937_RS11090	0.31	+0.6
2,508,268	+				+0.5
2,508,268	+				-0.5
2,508,268	+				-1.5
2,508,269	-				+0.4
2,508,288	+				-0.0
2,508,288	+				+0.4
2,508,289	-				+0.7
2,508,289	-				+2.3
2,508,323	+				-0.3
2,508,357	+				-1.7
2,508,357	+				+2.8
2,508,357	+				-1.5
2,508,358	-				-0.5
2,508,358	-				-1.3
2,508,358	-				-0.4
2,508,358	-				-1.4
2,508,358	-				+0.3
2,508,446	+				-0.4
2,508,576	+				-1.0
2,508,576	+				-1.1
2,508,577	-				-0.5
2,508,577	-				-1.3
2,508,617	+				+0.6
2,508,622	-				-2.4
2,508,630	+				+1.0
2,508,630	+				-2.4
2,508,630	+				-0.2
2,508,630	+				+2.9
2,508,630	+				+0.9
2,508,630	+				-0.2
2,508,631	-				-1.0
2,508,813	+				+0.3
2,508,814	-		DDA3937_RS11095	0.10	-2.0
2,508,814	-		DDA3937_RS11095	0.10	+0.6
2,508,832	-		DDA3937_RS11095	0.10	+0.0
2,508,863	+		DDA3937_RS11095	0.11	-1.0
2,508,949	+		DDA3937_RS11095	0.13	-0.7
2,509,107	+		DDA3937_RS11095	0.16	+0.7
2,509,107	+		DDA3937_RS11095	0.16	-0.9
2,509,107	+		DDA3937_RS11095	0.16	+1.3
2,509,108	-		DDA3937_RS11095	0.16	+0.7
2,509,108	-		DDA3937_RS11095	0.16	-1.3
2,509,143	+		DDA3937_RS11095	0.17	-0.5
2,509,143	+		DDA3937_RS11095	0.17	+1.2
2,509,144	-		DDA3937_RS11095	0.17	-0.9
2,509,152	+				+1.3
2,509,152	+		DDA3937_RS11095	0.17	+2.7
2,509,152	+		DDA3937_RS11095	0.17	+1.7
2,509,153	-		DDA3937_RS11095	0.17	-0.9
2,509,153	-		DDA3937_RS11095	0.17	-0.7
2,509,153	-		DDA3937_RS11095	0.17	+0.6
2,509,153	-		DDA3937_RS11095	0.17	+0.5
2,509,189	-		DDA3937_RS11095	0.18	-1.4
2,509,348	+		DDA3937_RS11095	0.21	-0.5
2,509,458	+				+1.7
2,509,579	+		DDA3937_RS11095	0.26	+0.1
2,509,579	+				+2.0
2,509,750	-		DDA3937_RS11095	0.29	-0.9
2,509,854	+		DDA3937_RS11095	0.31	-0.4
2,509,854	+		DDA3937_RS11095	0.31	-0.9
2,509,855	-		DDA3937_RS11095	0.31	-1.0
2,509,855	-		DDA3937_RS11095	0.31	+0.7
2,509,855	-		DDA3937_RS11095	0.31	-2.0
2,509,855	-		DDA3937_RS11095	0.31	+0.6
2,509,855	-		DDA3937_RS11095	0.31	-1.3
2,509,856	+		DDA3937_RS11095	0.31	-1.3
2,509,856	+		DDA3937_RS11095	0.31	+0.7
2,509,857	-		DDA3937_RS11095	0.31	-0.5
2,509,857	-		DDA3937_RS11095	0.31	-0.5
2,509,857	-		DDA3937_RS11095	0.31	-0.6
2,509,937	-		DDA3937_RS11095	0.33	-2.3
2,509,940	+		DDA3937_RS11095	0.33	+0.1
2,509,940	+		DDA3937_RS11095	0.33	+1.3
2,509,941	-		DDA3937_RS11095	0.33	+3.7
2,509,962	+		DDA3937_RS11095	0.34	-0.7
2,509,964	+		DDA3937_RS11095	0.34	-1.5
2,509,964	+		DDA3937_RS11095	0.34	+0.2
2,509,964	+		DDA3937_RS11095	0.34	-0.5
2,509,964	+		DDA3937_RS11095	0.34	-0.0
2,509,964	+		DDA3937_RS11095	0.34	-1.7
2,509,964	+		DDA3937_RS11095	0.34	+0.3
2,509,964	+		DDA3937_RS11095	0.34	-0.7
2,509,964	+		DDA3937_RS11095	0.34	-0.5
2,509,965	-		DDA3937_RS11095	0.34	-1.4
2,509,965	-		DDA3937_RS11095	0.34	+0.1
2,509,965	-		DDA3937_RS11095	0.34	+2.9
2,509,965	-		DDA3937_RS11095	0.34	-0.5
2,509,965	-		DDA3937_RS11095	0.34	-0.2
2,509,968	+				+0.3
2,509,968	+		DDA3937_RS11095	0.34	-0.7
2,509,969	-		DDA3937_RS11095	0.34	-0.7
2,509,969	-		DDA3937_RS11095	0.34	+0.3
2,509,969	-		DDA3937_RS11095	0.34	-1.4
2,510,132	+				-0.7
2,510,133	-		DDA3937_RS11095	0.37	-0.1
2,510,201	+		DDA3937_RS11095	0.39	+0.8
2,510,305	+		DDA3937_RS11095	0.41	+0.3
2,510,306	-		DDA3937_RS11095	0.41	+1.7
2,510,323	+		DDA3937_RS11095	0.41	-1.6
2,510,323	+		DDA3937_RS11095	0.41	-0.0
2,510,323	+		DDA3937_RS11095	0.41	-0.7
2,510,323	+		DDA3937_RS11095	0.41	+1.0
2,510,323	+				-1.3
2,510,323	+		DDA3937_RS11095	0.41	-1.7
2,510,323	+		DDA3937_RS11095	0.41	+0.3
2,510,323	+		DDA3937_RS11095	0.41	-0.1
2,510,323	+		DDA3937_RS11095	0.41	-0.8
2,510,324	-		DDA3937_RS11095	0.41	-1.9
2,510,324	-		DDA3937_RS11095	0.41	-0.9
2,510,324	-		DDA3937_RS11095	0.41	+1.9
2,510,324	-		DDA3937_RS11095	0.41	-0.8
2,510,324	-		DDA3937_RS11095	0.41	+0.4
2,510,324	-		DDA3937_RS11095	0.41	+2.2
2,510,324	-		DDA3937_RS11095	0.41	-0.4
2,510,324	-		DDA3937_RS11095	0.41	-1.9
2,510,324	-		DDA3937_RS11095	0.41	-1.0
2,510,409	-		DDA3937_RS11095	0.43	-2.0
2,510,415	+		DDA3937_RS11095	0.43	+0.3
2,510,623	-		DDA3937_RS11095	0.47	+0.7
2,510,766	+		DDA3937_RS11095	0.50	-0.2
2,510,767	-		DDA3937_RS11095	0.50	-0.5
2,510,819	+		DDA3937_RS11095	0.51	+0.8
2,510,820	-		DDA3937_RS11095	0.51	+0.1
2,510,820	-		DDA3937_RS11095	0.51	-0.1
2,510,820	-		DDA3937_RS11095	0.51	-0.6
2,510,820	-		DDA3937_RS11095	0.51	+2.8
2,510,848	+		DDA3937_RS11095	0.52	-2.2
2,510,934	+		DDA3937_RS11095	0.54	-0.5
2,510,935	-		DDA3937_RS11095	0.54	-0.7
2,511,050	+		DDA3937_RS11095	0.56	-0.1
2,511,050	+		DDA3937_RS11095	0.56	-0.4
2,511,051	-		DDA3937_RS11095	0.56	+0.9
2,511,051	-		DDA3937_RS11095	0.56	-0.4
2,511,051	-		DDA3937_RS11095	0.56	-0.7
2,511,051	-		DDA3937_RS11095	0.56	+0.1
2,511,303	+		DDA3937_RS11095	0.61	-0.3
2,511,303	+		DDA3937_RS11095	0.61	+0.2
2,511,417	+		DDA3937_RS11095	0.63	-0.2
2,511,418	-		DDA3937_RS11095	0.63	+1.1
2,511,418	-		DDA3937_RS11095	0.63	-1.2
2,511,418	-		DDA3937_RS11095	0.63	-0.7
2,511,465	+		DDA3937_RS11095	0.64	+0.1
2,511,465	+		DDA3937_RS11095	0.64	-0.6
2,511,466	-		DDA3937_RS11095	0.64	-0.8
2,511,466	-		DDA3937_RS11095	0.64	-1.3
2,511,574	-		DDA3937_RS11095	0.67	-1.6
2,511,647	+		DDA3937_RS11095	0.68	+0.8
2,511,647	+		DDA3937_RS11095	0.68	-2.2
2,511,647	+		DDA3937_RS11095	0.68	-0.1
2,511,648	-		DDA3937_RS11095	0.68	+1.3
2,511,648	-		DDA3937_RS11095	0.68	-0.5
2,511,648	-		DDA3937_RS11095	0.68	-2.2
2,511,648	-		DDA3937_RS11095	0.68	+1.0
2,511,648	-		DDA3937_RS11095	0.68	+0.1
2,511,657	+		DDA3937_RS11095	0.68	+2.4
2,511,700	-		DDA3937_RS11095	0.69	+0.2
2,511,728	+		DDA3937_RS11095	0.70	+0.1
2,511,728	+		DDA3937_RS11095	0.70	-0.5
2,511,728	+		DDA3937_RS11095	0.70	-0.0
2,511,728	+		DDA3937_RS11095	0.70	+0.6
2,511,729	-		DDA3937_RS11095	0.70	+1.2
2,511,729	-		DDA3937_RS11095	0.70	-0.0
2,511,729	-		DDA3937_RS11095	0.70	+0.8
2,511,733	+		DDA3937_RS11095	0.70	+1.0
2,511,733	+		DDA3937_RS11095	0.70	-0.2
2,511,733	+		DDA3937_RS11095	0.70	-1.1
2,511,734	-		DDA3937_RS11095	0.70	-1.2
2,511,734	-		DDA3937_RS11095	0.70	+0.2
2,511,734	-		DDA3937_RS11095	0.70	-1.9
2,512,277	-		DDA3937_RS11095	0.81	-1.1
2,512,371	+		DDA3937_RS11095	0.83	-0.9
2,512,372	-		DDA3937_RS11095	0.83	-1.2
2,512,389	-		DDA3937_RS11095	0.83	-1.7
2,512,389	-		DDA3937_RS11095	0.83	-1.0
2,512,389	-		DDA3937_RS11095	0.83	+0.6
2,512,389	-		DDA3937_RS11095	0.83	+0.3
2,512,470	+		DDA3937_RS11095	0.85	-0.4
2,512,471	-		DDA3937_RS11095	0.85	-1.0
2,512,472	+		DDA3937_RS11095	0.85	-0.0
2,512,472	+		DDA3937_RS11095	0.85	-0.3
2,512,472	+		DDA3937_RS11095	0.85	+0.9
2,512,473	-		DDA3937_RS11095	0.85	-0.0
2,512,489	+		DDA3937_RS11095	0.85	-1.0
2,512,489	+		DDA3937_RS11095	0.85	+0.9
2,512,490	-		DDA3937_RS11095	0.85	-0.8
2,512,490	-		DDA3937_RS11095	0.85	-1.0
2,512,615	+		DDA3937_RS11095	0.88	-0.2
2,512,616	-		DDA3937_RS11095	0.88	-0.3
2,512,616	-		DDA3937_RS11095	0.88	-1.7
2,512,616	-		DDA3937_RS11095	0.88	+1.3
2,512,616	-				-0.7
2,512,643	+		DDA3937_RS11095	0.89	+2.5
2,512,643	+		DDA3937_RS11095	0.89	-1.1
2,512,643	+		DDA3937_RS11095	0.89	+0.7
2,512,644	-		DDA3937_RS11095	0.89	-0.4
2,512,644	-				-0.7
2,512,764	+				-0.9
2,512,764	+				-1.4
2,512,764	+				-0.1
2,512,830	+				-1.0
2,512,831	-				+3.6
2,512,831	-				-0.7
2,512,831	-				+0.9
2,512,834	+				+1.1
2,512,835	-				+4.1
2,512,835	-				-0.3
2,512,835	-				-0.3
2,512,887	+				-0.9
2,512,887	+				-0.6
2,512,887	+				-0.5
2,512,888	-				-0.5
2,513,178	+				+1.3
2,513,178	+				+1.2
2,513,222	+				+1.0
2,513,222	+				-2.1
2,513,223	-				-0.7
2,513,223	-				-0.4
2,513,233	+				-1.7
2,513,234	-				+1.3
2,513,249	+				-0.2
2,513,250	-				+0.7
2,513,421	+				-1.0
2,513,421	+				-0.7
2,513,421	+				-0.5
2,513,421	+				+1.3
2,513,421	+				-2.6
2,513,421	+				-0.7
2,513,422	-				-1.2
2,513,422	-				-0.6
2,513,422	-				-0.9
2,513,422	-				-1.0
2,513,422	-				-0.9
2,513,422	-				+0.5
2,513,422	-				+2.3
2,513,448	+				+0.1
2,513,523	+		DDA3937_RS11100	0.10	+0.7
2,513,736	-		DDA3937_RS11100	0.32	+1.0
2,513,842	-		DDA3937_RS11100	0.43	-1.4
2,513,842	-		DDA3937_RS11100	0.43	+0.6
2,514,004	-		DDA3937_RS11100	0.59	+5.5