Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10905

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,459,595	-		DDA3937_RS10900	0.22	-1.1
2,459,617	+		DDA3937_RS10900	0.24	+1.5
2,459,617	+		DDA3937_RS10900	0.24	-0.7
2,459,617	+		DDA3937_RS10900	0.24	+0.3
2,459,618	-		DDA3937_RS10900	0.24	+2.6
2,459,618	-		DDA3937_RS10900	0.24	-0.4
2,459,618	-		DDA3937_RS10900	0.24	+0.4
2,459,661	+		DDA3937_RS10900	0.28	-0.5
2,459,661	+		DDA3937_RS10900	0.28	+0.1
2,459,662	-		DDA3937_RS10900	0.28	-0.3
2,459,716	+		DDA3937_RS10900	0.32	-0.0
2,459,716	+		DDA3937_RS10900	0.32	+0.8
2,459,717	-		DDA3937_RS10900	0.33	+0.3
2,459,753	+		DDA3937_RS10900	0.36	+1.8
2,459,753	+		DDA3937_RS10900	0.36	-0.1
2,459,754	-		DDA3937_RS10900	0.36	-0.9
2,459,754	-		DDA3937_RS10900	0.36	-0.1
2,459,754	-		DDA3937_RS10900	0.36	-1.7
2,459,754	-		DDA3937_RS10900	0.36	-1.1
2,459,758	+		DDA3937_RS10900	0.36	-0.4
2,459,758	+		DDA3937_RS10900	0.36	-1.3
2,459,758	+		DDA3937_RS10900	0.36	-0.3
2,459,969	+		DDA3937_RS10900	0.55	-1.0
2,459,969	+				+0.9
2,459,969	+		DDA3937_RS10900	0.55	-1.7
2,459,969	+		DDA3937_RS10900	0.55	-1.9
2,459,969	+		DDA3937_RS10900	0.55	-0.9
2,459,969	+		DDA3937_RS10900	0.55	-1.2
2,459,970	-		DDA3937_RS10900	0.55	+0.5
2,459,970	-		DDA3937_RS10900	0.55	+0.1
2,459,972	+		DDA3937_RS10900	0.55	-0.1
2,459,973	-		DDA3937_RS10900	0.55	+0.4
2,459,987	+		DDA3937_RS10900	0.57	+0.2
2,460,084	-		DDA3937_RS10900	0.65	-1.2
2,460,085	+		DDA3937_RS10900	0.65	+0.1
2,460,139	+		DDA3937_RS10900	0.70	-0.1
2,460,140	-		DDA3937_RS10900	0.70	+0.1
2,460,140	-		DDA3937_RS10900	0.70	-0.6
2,460,140	-		DDA3937_RS10900	0.70	-1.9
2,460,210	+		DDA3937_RS10900	0.76	-0.5
2,460,402	+				-0.2
2,460,402	+				+1.9
2,460,465	-				-1.9
2,460,512	+				-0.7
2,460,513	-				-1.6
2,460,610	+				+0.3
2,460,611	-				-0.2
2,460,620	+				+0.7
2,460,620	+				-0.9
2,460,620	+				-1.7
2,460,621	-		DDA3937_RS10905	0.10	-2.2
2,460,621	-		DDA3937_RS10905	0.10	-1.9
2,460,621	-		DDA3937_RS10905	0.10	-0.6
2,460,621	-		DDA3937_RS10905	0.10	+1.5
2,460,622	+		DDA3937_RS10905	0.10	-0.0
2,460,623	-		DDA3937_RS10905	0.10	-1.0
2,460,623	-		DDA3937_RS10905	0.10	+0.2
2,460,746	-		DDA3937_RS10905	0.24	-0.0
2,460,795	+		DDA3937_RS10905	0.30	+2.6
2,460,796	-		DDA3937_RS10905	0.30	+3.1
2,460,845	+		DDA3937_RS10905	0.35	-1.1
2,461,054	-		DDA3937_RS10905	0.59	-1.0
2,461,310	+		DDA3937_RS10905	0.87	-1.7
2,461,445	+				+0.1
2,461,449	+				-1.4
2,461,449	+				-1.7
2,461,450	-				-0.3
2,461,460	+				+0.1
2,461,460	+				-0.6
2,461,461	-				-1.7
2,461,461	-				-0.0
2,461,473	+				-1.0
2,461,473	+				+0.4
2,461,474	-				-1.0
2,461,502	+				-1.0
2,461,559	+				-0.2
2,461,559	+				-1.1
2,461,570	+				-0.8
2,461,570	+				+0.6
2,461,570	+				-0.4
2,461,571	-				-0.3
2,461,592	+				-1.5
2,461,592	+				+4.7
2,461,592	+				-0.2
2,461,599	-				-0.3
2,461,599	-				+0.8
2,461,647	+		DDA3937_RS10910	0.11	-0.5
2,461,647	+		DDA3937_RS10910	0.11	-0.3
2,461,647	+		DDA3937_RS10910	0.11	-1.1
2,461,647	+		DDA3937_RS10910	0.11	+0.5
2,461,647	+		DDA3937_RS10910	0.11	+0.9
2,461,647	+		DDA3937_RS10910	0.11	-0.9
2,461,647	+		DDA3937_RS10910	0.11	+0.2
2,461,647	+		DDA3937_RS10910	0.11	+0.5
2,461,647	+		DDA3937_RS10910	0.11	+0.9
2,461,647	+		DDA3937_RS10910	0.11	-0.7
2,461,647	+		DDA3937_RS10910	0.11	-0.8
2,461,647	+		DDA3937_RS10910	0.11	-0.8
2,461,648	-		DDA3937_RS10910	0.11	-0.6
2,461,648	-		DDA3937_RS10910	0.11	+0.1
2,461,648	-		DDA3937_RS10910	0.11	+0.7
2,461,648	-		DDA3937_RS10910	0.11	-1.3
2,461,648	-		DDA3937_RS10910	0.11	-2.0
2,461,649	+		DDA3937_RS10910	0.11	-0.4
2,461,649	+		DDA3937_RS10910	0.11	-0.4
2,461,650	-		DDA3937_RS10910	0.11	-1.4
2,461,650	-		DDA3937_RS10910	0.11	+0.5
2,461,650	-		DDA3937_RS10910	0.11	-1.0
2,461,650	-		DDA3937_RS10910	0.11	-0.7
2,461,650	-		DDA3937_RS10910	0.11	+0.3
2,461,650	-		DDA3937_RS10910	0.11	-1.4
2,461,650	-		DDA3937_RS10910	0.11	+0.3
2,461,653	+		DDA3937_RS10910	0.12	+0.5
2,461,671	+		DDA3937_RS10910	0.15	+0.2
2,461,678	+		DDA3937_RS10910	0.17	+0.9
2,461,678	+		DDA3937_RS10910	0.17	-2.4
2,461,678	+		DDA3937_RS10910	0.17	+0.1
2,461,678	+		DDA3937_RS10910	0.17	-1.5
2,461,678	+		DDA3937_RS10910	0.17	-1.3
2,461,678	+				+0.3
2,461,678	+		DDA3937_RS10910	0.17	+0.8
2,461,678	+		DDA3937_RS10910	0.17	-0.2
2,461,679	-		DDA3937_RS10910	0.17	-1.4
2,461,679	-		DDA3937_RS10910	0.17	-0.1
2,461,680	+		DDA3937_RS10910	0.17	-0.3
2,461,680	+				+0.9
2,461,680	+		DDA3937_RS10910	0.17	-1.3
2,461,680	+		DDA3937_RS10910	0.17	+0.9
2,461,680	+		DDA3937_RS10910	0.17	+1.4
2,461,680	+		DDA3937_RS10910	0.17	-2.1
2,461,680	+		DDA3937_RS10910	0.17	+0.1
2,461,680	+		DDA3937_RS10910	0.17	+0.2
2,461,681	-		DDA3937_RS10910	0.17	+2.0
2,461,681	-		DDA3937_RS10910	0.17	-0.3
2,461,681	-		DDA3937_RS10910	0.17	-0.5
2,461,681	-		DDA3937_RS10910	0.17	-0.8
2,461,681	-		DDA3937_RS10910	0.17	-0.1
2,461,681	-		DDA3937_RS10910	0.17	+0.5
2,461,681	-		DDA3937_RS10910	0.17	-0.0
2,461,681	-		DDA3937_RS10910	0.17	+0.2
2,461,681	-		DDA3937_RS10910	0.17	+0.5
2,461,825	+		DDA3937_RS10910	0.46	+0.3
2,461,825	+		DDA3937_RS10910	0.46	+0.6
2,461,825	+		DDA3937_RS10910	0.46	-0.5
2,461,825	+		DDA3937_RS10910	0.46	-1.3
2,461,972	-		DDA3937_RS10910	0.75	+0.3
2,462,006	+		DDA3937_RS10910	0.81	-1.0
2,462,007	-		DDA3937_RS10910	0.82	-0.3
2,462,007	-		DDA3937_RS10910	0.82	-0.4
2,462,097	+				+0.7
2,462,098	-				-0.5
2,462,149	-				-1.0
2,462,163	+				+0.7
2,462,167	+				-1.1
2,462,167	+				+0.2
2,462,167	+				+1.1
2,462,167	+				-0.5
2,462,167	+				-1.0
2,462,167	+				-0.4
2,462,167	+				-0.3
2,462,167	+				+0.5
2,462,167	+				-1.4
2,462,168	-				-0.1
2,462,168	-				-0.2
2,462,168	-				+0.6
2,462,168	-				+0.6
2,462,168	-				-0.9
2,462,170	+				-0.6
2,462,170	+				+0.2
2,462,171	-				+0.1
2,462,171	-				+0.7
2,462,171	-				+0.3
2,462,171	-				-0.5
2,462,171	-				-1.4
2,462,202	+				-1.5
2,462,203	-				-1.7
2,462,203	-				-2.4
2,462,221	+				+1.0
2,462,277	+				-1.0
2,462,304	+				-1.2
2,462,318	-				+0.9
2,462,321	+				-0.7
2,462,322	-				-0.7
2,462,322	-				-1.5
2,462,322	-				-1.8
2,462,336	-				-1.9
2,462,350	+				-0.8