Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09330

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,097,078	-		DDA3937_RS09325	0.28	-1.0
2,097,078	-		DDA3937_RS09325	0.28	-0.6
2,097,078	-		DDA3937_RS09325	0.28	-0.3
2,097,152	-		DDA3937_RS09325	0.35	-0.7
2,097,152	-		DDA3937_RS09325	0.35	-0.0
2,097,336	-		DDA3937_RS09325	0.51	-1.9
2,097,336	-		DDA3937_RS09325	0.51	-0.5
2,097,469	+		DDA3937_RS09325	0.63	-0.1
2,097,469	+		DDA3937_RS09325	0.63	-0.9
2,097,469	+		DDA3937_RS09325	0.63	+0.9
2,097,470	-		DDA3937_RS09325	0.63	-0.3
2,097,470	-		DDA3937_RS09325	0.63	+0.8
2,097,610	+		DDA3937_RS09325	0.76	+4.0
2,097,610	+		DDA3937_RS09325	0.76	-0.4
2,097,611	-		DDA3937_RS09325	0.76	-0.2
2,097,611	-		DDA3937_RS09325	0.76	-0.0
2,097,739	+		DDA3937_RS09325	0.87	+1.5
2,097,739	+		DDA3937_RS09325	0.87	+0.3
2,097,739	+		DDA3937_RS09325	0.87	-0.9
2,097,739	+		DDA3937_RS09325	0.87	-1.0
2,097,739	+		DDA3937_RS09325	0.87	-0.1
2,097,740	-		DDA3937_RS09325	0.87	+0.4
2,097,740	-		DDA3937_RS09325	0.87	+0.8
2,097,740	-		DDA3937_RS09325	0.87	+0.2
2,097,740	-		DDA3937_RS09325	0.87	-1.5
2,097,813	+				+0.5
2,097,814	-				-0.3
2,097,895	-				-1.2
2,097,900	+				-0.5
2,097,900	+				+1.3
2,097,901	-				-0.7
2,097,901	-				+0.7
2,097,906	+				-0.1
2,097,906	+				-0.7
2,097,906	+				+0.2
2,098,057	-				-0.2
2,098,057	-				-0.2
2,098,057	-				-0.9
2,098,136	-		DDA3937_RS09330	0.17	-1.0
2,098,196	+		DDA3937_RS09330	0.24	-0.5
2,098,196	+		DDA3937_RS09330	0.24	-0.7
2,098,196	+		DDA3937_RS09330	0.24	+1.5
2,098,196	+		DDA3937_RS09330	0.24	-2.7
2,098,197	-		DDA3937_RS09330	0.25	+0.2
2,098,197	-		DDA3937_RS09330	0.25	-0.5
2,098,197	-		DDA3937_RS09330	0.25	-0.7
2,098,197	-		DDA3937_RS09330	0.25	-1.0
2,098,197	-		DDA3937_RS09330	0.25	+1.0
2,098,206	+		DDA3937_RS09330	0.26	+0.1
2,098,206	+		DDA3937_RS09330	0.26	-2.6
2,098,206	+		DDA3937_RS09330	0.26	-1.0
2,098,207	-		DDA3937_RS09330	0.26	-0.4
2,098,207	-		DDA3937_RS09330	0.26	-0.7
2,098,207	-		DDA3937_RS09330	0.26	+1.3
2,098,207	-		DDA3937_RS09330	0.26	-2.0
2,098,207	-		DDA3937_RS09330	0.26	-1.1
2,098,210	+		DDA3937_RS09330	0.26	-1.7
2,098,210	+		DDA3937_RS09330	0.26	-0.5
2,098,210	+		DDA3937_RS09330	0.26	+1.3
2,098,210	+		DDA3937_RS09330	0.26	-2.1
2,098,211	-		DDA3937_RS09330	0.26	+2.4
2,098,211	-		DDA3937_RS09330	0.26	+1.5
2,098,211	-		DDA3937_RS09330	0.26	-0.0
2,098,211	-		DDA3937_RS09330	0.26	+1.3
2,098,211	-		DDA3937_RS09330	0.26	-0.0
2,098,211	-		DDA3937_RS09330	0.26	-1.5
2,098,214	-		DDA3937_RS09330	0.27	+1.3
2,098,214	-		DDA3937_RS09330	0.27	-0.7
2,098,490	-		DDA3937_RS09330	0.58	+0.4
2,098,517	+		DDA3937_RS09330	0.62	+0.6
2,098,517	+		DDA3937_RS09330	0.62	+1.5
2,098,518	-		DDA3937_RS09330	0.62	-1.3
2,098,638	+		DDA3937_RS09330	0.76	-1.1
2,098,638	+		DDA3937_RS09330	0.76	+0.6
2,098,639	-		DDA3937_RS09330	0.76	-0.9
2,098,649	+		DDA3937_RS09330	0.77	-1.5
2,098,827	+				-0.7
2,098,827	+				-0.1
2,098,827	+				+3.0
2,098,827	+				+0.1
2,098,828	-				-0.7
2,098,828	-				-2.0
2,098,828	-				-1.0
2,098,828	-				+0.0
2,098,828	-				-0.3
2,098,828	-				-0.0
2,098,828	-				+0.3
2,098,828	-				-1.0
2,098,828	-				-1.9
2,098,887	-				-0.2
2,098,910	+				-0.3
2,098,911	-				-0.4
2,098,911	-				+0.9
2,098,911	-				-1.5
2,098,911	-				+0.5
2,098,911	-				-1.8
2,098,911	-				-1.6
2,098,911	-				-3.0
2,098,975	+				-0.5
2,098,975	+				+1.9
2,098,975	+				+0.1
2,098,976	-				+0.4
2,098,976	-				+0.3
2,098,976	-				-0.7
2,098,976	-				+0.1
2,098,976	-				-0.3
2,098,976	-				+0.3
2,098,976	-				+0.0
2,098,976	-				+0.0
2,099,021	+				+0.3
2,099,041	+				-0.7
2,099,041	+				-1.4
2,099,041	+				-0.7
2,099,041	+				-2.5
2,099,042	-				+0.1
2,099,042	-				-2.8
2,099,042	-				-2.6
2,099,046	-				-0.1
2,099,046	-				-0.5
2,099,048	-				-0.6
2,099,060	+				-0.3
2,099,060	+				+0.1
2,099,076	+				+0.2
2,099,076	+				-0.7
2,099,076	+				-1.7
2,099,077	-				-0.7
2,099,078	+				+1.0
2,099,078	+				-1.1
2,099,078	+				-0.9
2,099,079	-				-0.3
2,099,079	-				+2.9
2,099,083	-				-0.1
2,099,098	+				+0.1
2,099,110	+				-1.2
2,099,132	+				-2.5
2,099,132	+				-0.4
2,099,133	-				-0.8
2,099,151	+				-0.3
2,099,152	-				-0.7
2,099,169	-				+8.8
2,099,174	+				-0.7
2,099,175	-				-0.3
2,099,178	+				+0.6
2,099,178	+				-1.3
2,099,178	+				-0.3
2,099,179	-				-0.6
2,099,179	-				-0.8
2,099,184	+				+0.1
2,099,184	+				-0.9
2,099,184	+				+0.6
2,099,185	-				-0.6
2,099,220	-				-2.9
2,099,247	+				+0.9
2,099,269	+				-0.5
2,099,349	+				-1.5
2,099,350	-				-1.9
2,099,358	-				+0.7
2,099,412	+				-2.8
2,099,412	+				+1.6
2,099,413	-				-0.3
2,099,416	+				-0.7
2,099,416	+				-1.3
2,099,417	-				+0.3
2,099,486	+				-2.7
2,099,486	+				-1.6
2,099,489	+				-0.7
2,099,490	-				+0.8
2,099,522	-				-0.3
2,099,550	+				+0.7
2,099,550	+				-2.4
2,099,550	+				-0.6
2,099,568	+				-0.3
2,099,569	-				-2.1
2,099,607	+				-0.3
2,099,607	+				-2.1
2,099,607	+				+0.9
2,099,608	-				+0.6
2,099,608	-				+1.8
2,099,608	-				+0.3
2,099,612	-				-0.1
2,099,657	+				-1.1
2,099,662	+				-2.3
2,099,663	-				+0.7
2,099,663	-				-1.3
2,099,663	-				+0.2
2,099,663	-				+0.8
2,099,719	+		DDA3937_RS09335	0.13	-0.2
2,099,719	+		DDA3937_RS09335	0.13	-0.6
2,099,719	+		DDA3937_RS09335	0.13	-0.1