Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08870

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,002,443	+				-1.1
2,002,530	+				+1.2
2,002,531	-				-0.3
2,002,536	-				-1.6
2,002,536	-				-1.5
2,002,661	-		DDA3937_RS08865	0.17	+0.7
2,002,661	-		DDA3937_RS08865	0.17	-1.8
2,002,672	+		DDA3937_RS08865	0.18	-0.5
2,002,673	-		DDA3937_RS08865	0.18	+2.7
2,002,709	-		DDA3937_RS08865	0.22	+0.3
2,002,737	+		DDA3937_RS08865	0.25	-0.1
2,002,737	+		DDA3937_RS08865	0.25	+2.2
2,002,738	-		DDA3937_RS08865	0.25	-0.4
2,002,738	-		DDA3937_RS08865	0.25	+0.0
2,002,738	-		DDA3937_RS08865	0.25	-0.3
2,002,738	-		DDA3937_RS08865	0.25	+0.4
2,002,808	+		DDA3937_RS08865	0.33	+0.6
2,002,808	+		DDA3937_RS08865	0.33	-0.6
2,002,809	-		DDA3937_RS08865	0.33	-1.6
2,002,887	-		DDA3937_RS08865	0.42	+1.3
2,002,908	-		DDA3937_RS08865	0.45	+0.2
2,002,927	+		DDA3937_RS08865	0.47	-1.5
2,002,927	+		DDA3937_RS08865	0.47	-1.8
2,003,025	+		DDA3937_RS08865	0.58	+0.0
2,003,025	+		DDA3937_RS08865	0.58	-0.7
2,003,026	-		DDA3937_RS08865	0.58	-0.7
2,003,040	-		DDA3937_RS08865	0.59	-2.0
2,003,102	-		DDA3937_RS08865	0.66	-1.3
2,003,102	-		DDA3937_RS08865	0.66	-1.3
2,003,102	-		DDA3937_RS08865	0.66	-0.5
2,003,102	-		DDA3937_RS08865	0.66	+0.5
2,003,102	-		DDA3937_RS08865	0.66	-1.3
2,003,105	+		DDA3937_RS08865	0.67	+3.2
2,003,129	+		DDA3937_RS08865	0.69	-1.0
2,003,129	+		DDA3937_RS08865	0.69	+0.2
2,003,162	+		DDA3937_RS08865	0.73	+3.0
2,003,186	+		DDA3937_RS08865	0.76	-1.2
2,003,186	+		DDA3937_RS08865	0.76	+2.3
2,003,242	+		DDA3937_RS08865	0.82	+1.5
2,003,271	+		DDA3937_RS08865	0.86	+1.3
2,003,271	+		DDA3937_RS08865	0.86	-2.1
2,003,272	-		DDA3937_RS08865	0.86	+0.5
2,003,272	-		DDA3937_RS08865	0.86	-0.1
2,003,272	-		DDA3937_RS08865	0.86	+0.0
2,003,272	-		DDA3937_RS08865	0.86	-0.8
2,003,272	-		DDA3937_RS08865	0.86	-1.4
2,003,332	+				+0.5
2,003,332	+				+1.2
2,003,358	-				+0.4
2,003,359	+				-1.3
2,003,359	+				-0.7
2,003,360	-				+0.1
2,003,360	-				+0.3
2,003,360	-				-0.2
2,003,360	-				-1.7
2,003,360	-				-0.2
2,003,360	-				+0.2
2,003,366	+				+1.2
2,003,384	+				-0.3
2,003,384	+				-0.3
2,003,385	-				-0.2
2,003,385	-				-1.0
2,003,385	-				+1.7
2,003,385	-				-0.3
2,003,385	-				-1.2
2,003,385	-				-1.1
2,003,385	-				-0.4
2,003,392	+				-1.0
2,003,392	+				+0.0
2,003,393	-				+1.1
2,003,396	+				-0.9
2,003,396	+				-2.4
2,003,397	-				-0.5
2,003,410	+				-0.3
2,003,414	+				-0.5
2,003,414	+				+0.6
2,003,415	-				-2.0
2,003,415	-				-0.7
2,003,415	-				+0.3
2,003,415	-				+0.1
2,003,458	+				-2.1
2,003,459	-				-1.5
2,003,484	+				-0.2
2,003,484	+				+2.4
2,003,484	+				+0.1
2,003,485	-				+0.0
2,003,485	-				-0.5
2,003,485	-				-0.7
2,003,523	+		DDA3937_RS08870	0.14	+0.4
2,003,523	+		DDA3937_RS08870	0.14	+0.6
2,003,727	-		DDA3937_RS08870	0.34	-1.2
2,003,754	+		DDA3937_RS08870	0.36	+2.5
2,003,755	-		DDA3937_RS08870	0.37	+0.4
2,003,811	+		DDA3937_RS08870	0.42	+0.2
2,003,812	-		DDA3937_RS08870	0.42	-1.5
2,003,866	+		DDA3937_RS08870	0.48	+0.3
2,003,866	+		DDA3937_RS08870	0.48	+1.3
2,003,866	+		DDA3937_RS08870	0.48	-0.8
2,003,866	+		DDA3937_RS08870	0.48	-1.6
2,003,867	-		DDA3937_RS08870	0.48	-0.2
2,003,867	-		DDA3937_RS08870	0.48	+1.1
2,003,976	+		DDA3937_RS08870	0.58	+0.2
2,003,976	+		DDA3937_RS08870	0.58	-1.8
2,003,976	+		DDA3937_RS08870	0.58	+1.8
2,003,976	+		DDA3937_RS08870	0.58	+4.2
2,003,976	+		DDA3937_RS08870	0.58	-0.3
2,003,976	+		DDA3937_RS08870	0.58	-1.9
2,003,977	-		DDA3937_RS08870	0.59	-1.8
2,003,977	-		DDA3937_RS08870	0.59	-0.1
2,004,154	-		DDA3937_RS08870	0.76	-0.5
2,004,231	+		DDA3937_RS08870	0.84	+1.0
2,004,295	-				-0.8
2,004,400	-				-1.2
2,004,425	-				-1.4
2,004,425	-				-0.4
2,004,427	+				+0.1
2,004,427	+				-0.3
2,004,455	+				-2.7
2,004,539	-				-1.7
2,004,550	+				+1.3
2,004,550	+				-0.4
2,004,597	-				+0.8
2,004,626	+				+0.3
2,004,691	+				-0.4
2,004,691	+				-0.4
2,004,691	+				+1.0
2,004,691	+				-1.6
2,004,807	+				-1.3
2,004,807	+				-1.6
2,004,840	+		DDA3937_RS08875	0.12	+0.1
2,004,841	-		DDA3937_RS08875	0.12	+0.3
2,005,021	-		DDA3937_RS08875	0.26	-1.3
2,005,021	-		DDA3937_RS08875	0.26	-0.3
2,005,021	-		DDA3937_RS08875	0.26	-0.4
2,005,023	+		DDA3937_RS08875	0.26	-0.3
2,005,087	-		DDA3937_RS08875	0.31	-0.4
2,005,116	+		DDA3937_RS08875	0.33	-0.8
2,005,116	+		DDA3937_RS08875	0.33	-1.5
2,005,116	+		DDA3937_RS08875	0.33	-0.9
2,005,188	+		DDA3937_RS08875	0.39	-2.1
2,005,233	+		DDA3937_RS08875	0.42	-0.1
2,005,239	+		DDA3937_RS08875	0.43	-1.8
2,005,284	+		DDA3937_RS08875	0.46	-0.6
2,005,284	+		DDA3937_RS08875	0.46	-3.5
2,005,284	+		DDA3937_RS08875	0.46	+1.5
2,005,308	+		DDA3937_RS08875	0.48	+1.0
2,005,308	+		DDA3937_RS08875	0.48	-0.9
2,005,309	-				-1.0
2,005,309	-		DDA3937_RS08875	0.48	-0.3
2,005,311	+		DDA3937_RS08875	0.48	-0.4
2,005,311	+		DDA3937_RS08875	0.48	-1.3
2,005,311	+		DDA3937_RS08875	0.48	+0.8
2,005,311	+		DDA3937_RS08875	0.48	+0.3
2,005,311	+		DDA3937_RS08875	0.48	+0.0
2,005,312	-		DDA3937_RS08875	0.48	-0.3
2,005,312	-		DDA3937_RS08875	0.48	-0.3
2,005,312	-		DDA3937_RS08875	0.48	-0.9
2,005,331	-		DDA3937_RS08875	0.50	-0.4
2,005,331	-		DDA3937_RS08875	0.50	-1.2
2,005,337	+		DDA3937_RS08875	0.50	-1.1
2,005,338	-		DDA3937_RS08875	0.50	-1.1
2,005,338	-		DDA3937_RS08875	0.50	+0.0
2,005,338	-		DDA3937_RS08875	0.50	+0.1
2,005,338	-		DDA3937_RS08875	0.50	-1.8
2,005,338	-		DDA3937_RS08875	0.50	-1.8