Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08705

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,963,899	+				+0.4
1,963,900	-				-1.8
1,963,900	-				-0.1
1,963,900	-				-0.8
1,963,949	-				-0.0
1,963,964	+				-0.7
1,963,964	+				-0.8
1,963,965	-				+2.5
1,963,965	-				-0.1
1,963,967	+				-0.2
1,963,967	+				+0.3
1,963,967	+				+0.1
1,963,968	-				+0.3
1,963,968	-				-1.5
1,963,968	-				-1.5
1,963,968	-				-1.4
1,963,968	-				+1.5
1,963,968	-				+2.3
1,963,975	+				-2.0
1,963,975	+				+1.5
1,963,977	+				-0.2
1,963,978	-				-0.5
1,963,978	-				-0.2
1,963,978	-				+1.1
1,964,010	+				-2.9
1,964,092	+		DDA3937_RS08700	0.17	-0.2
1,964,092	+		DDA3937_RS08700	0.17	+0.8
1,964,092	+		DDA3937_RS08700	0.17	+4.3
1,964,092	+		DDA3937_RS08700	0.17	-2.1
1,964,093	-		DDA3937_RS08700	0.18	-1.5
1,964,093	-		DDA3937_RS08700	0.18	+0.0
1,964,093	-		DDA3937_RS08700	0.18	-1.3
1,964,093	-		DDA3937_RS08700	0.18	+1.1
1,964,093	-		DDA3937_RS08700	0.18	-0.2
1,964,093	-		DDA3937_RS08700	0.18	-2.4
1,964,093	-		DDA3937_RS08700	0.18	-2.8
1,964,116	+		DDA3937_RS08700	0.20	-0.7
1,964,117	-		DDA3937_RS08700	0.20	-2.7
1,964,117	-		DDA3937_RS08700	0.20	+0.8
1,964,202	+		DDA3937_RS08700	0.30	-0.0
1,964,233	+		DDA3937_RS08700	0.34	-0.2
1,964,233	+		DDA3937_RS08700	0.34	-2.0
1,964,234	-		DDA3937_RS08700	0.34	-0.5
1,964,239	-		DDA3937_RS08700	0.34	-0.5
1,964,313	+		DDA3937_RS08700	0.43	-0.8
1,964,314	-		DDA3937_RS08700	0.43	-1.4
1,964,314	-		DDA3937_RS08700	0.43	-0.5
1,964,348	-		DDA3937_RS08700	0.47	-0.4
1,964,433	+		DDA3937_RS08700	0.56	-1.2
1,964,433	+		DDA3937_RS08700	0.56	+1.2
1,964,434	-		DDA3937_RS08700	0.57	+0.9
1,964,446	+		DDA3937_RS08700	0.58	-0.2
1,964,449	-		DDA3937_RS08700	0.58	+0.9
1,964,449	-		DDA3937_RS08700	0.58	-0.7
1,964,449	-		DDA3937_RS08700	0.58	-0.8
1,964,513	+		DDA3937_RS08700	0.66	-0.5
1,964,514	-		DDA3937_RS08700	0.66	-2.1
1,964,550	+		DDA3937_RS08700	0.70	-1.8
1,964,550	+		DDA3937_RS08700	0.70	+0.3
1,964,550	+		DDA3937_RS08700	0.70	+0.6
1,964,583	+		DDA3937_RS08700	0.74	+0.1
1,964,584	-		DDA3937_RS08700	0.74	-0.0
1,964,641	+		DDA3937_RS08700	0.80	-1.1
1,964,641	+		DDA3937_RS08700	0.80	-3.5
1,964,641	+		DDA3937_RS08700	0.80	-2.7
1,964,641	+		DDA3937_RS08700	0.80	+0.3
1,964,641	+		DDA3937_RS08700	0.80	+1.3
1,964,641	+		DDA3937_RS08700	0.80	+0.2
1,964,642	-		DDA3937_RS08700	0.80	-0.9
1,964,642	-		DDA3937_RS08700	0.80	+0.8
1,964,642	-		DDA3937_RS08700	0.80	+0.7
1,964,642	-		DDA3937_RS08700	0.80	-1.2
1,964,642	-		DDA3937_RS08700	0.80	+0.1
1,964,642	-		DDA3937_RS08700	0.80	-1.1
1,964,642	-		DDA3937_RS08700	0.80	-1.3
1,964,642	-		DDA3937_RS08700	0.80	-1.1
1,964,858	+				-1.7
1,964,859	-				+0.0
1,965,083	+		DDA3937_RS08705	0.22	-1.1
1,965,083	+		DDA3937_RS08705	0.22	-0.7
1,965,083	+		DDA3937_RS08705	0.22	-0.2
1,965,083	+		DDA3937_RS08705	0.22	-1.5
1,965,083	+		DDA3937_RS08705	0.22	-0.0
1,965,083	+		DDA3937_RS08705	0.22	+0.5
1,965,083	+		DDA3937_RS08705	0.22	+1.0
1,965,083	+		DDA3937_RS08705	0.22	-1.7
1,965,083	+		DDA3937_RS08705	0.22	-1.0
1,965,084	-		DDA3937_RS08705	0.22	-1.0
1,965,084	-		DDA3937_RS08705	0.22	+0.3
1,965,084	-		DDA3937_RS08705	0.22	+0.0
1,965,087	+		DDA3937_RS08705	0.22	-0.5
1,965,154	+		DDA3937_RS08705	0.27	-2.1
1,965,155	-		DDA3937_RS08705	0.27	+1.7
1,965,155	-		DDA3937_RS08705	0.27	-0.8
1,965,165	+		DDA3937_RS08705	0.28	-1.5
1,965,258	-		DDA3937_RS08705	0.36	+1.3
1,965,422	+		DDA3937_RS08705	0.49	-0.1
1,965,422	+		DDA3937_RS08705	0.49	+2.8
1,965,423	-		DDA3937_RS08705	0.49	-0.1
1,965,423	-				+2.3
1,965,459	-		DDA3937_RS08705	0.52	+0.3
1,965,508	+		DDA3937_RS08705	0.56	-0.0
1,965,651	+		DDA3937_RS08705	0.68	-0.2
1,965,652	-		DDA3937_RS08705	0.68	-0.4
1,966,039	-				-1.0
1,966,059	-				+0.6
1,966,071	+				-0.7
1,966,100	+				-0.8
1,966,100	+				-0.4
1,966,101	-				+2.3
1,966,243	+				-1.0
1,966,243	+				+0.1
1,966,244	-				-0.2
1,966,272	+				-0.6
1,966,285	+				-0.8
1,966,285	+				-1.9
1,966,285	+				+0.3
1,966,285	+				+0.6
1,966,285	+				-0.2
1,966,285	+				-1.2
1,966,285	+				-0.7
1,966,285	+				-1.0
1,966,285	+				-1.0
1,966,285	+				-1.1
1,966,285	+				-0.6
1,966,286	-				-0.2
1,966,286	-				-0.1
1,966,286	-				+0.8
1,966,286	-				-1.0
1,966,286	-				+0.3
1,966,286	-				-0.4
1,966,286	-				-1.1
1,966,287	+				-1.2
1,966,288	-				-0.7
1,966,288	-				-1.7
1,966,288	-				+1.6
1,966,327	+		DDA3937_RS08710	0.10	+0.5
1,966,327	+		DDA3937_RS08710	0.10	-0.1
1,966,328	-		DDA3937_RS08710	0.10	+0.3
1,966,328	-		DDA3937_RS08710	0.10	-2.0
1,966,328	-		DDA3937_RS08710	0.10	-3.2
1,966,328	-		DDA3937_RS08710	0.10	-2.1
1,966,411	-		DDA3937_RS08710	0.16	-2.4
1,966,418	-		DDA3937_RS08710	0.16	+0.5
1,966,418	-		DDA3937_RS08710	0.16	-1.0
1,966,434	+		DDA3937_RS08710	0.17	-0.0
1,966,550	+		DDA3937_RS08710	0.24	-2.2
1,966,564	+		DDA3937_RS08710	0.25	-0.4
1,966,565	-		DDA3937_RS08710	0.25	+1.8
1,966,565	-		DDA3937_RS08710	0.25	-2.0
1,966,687	+		DDA3937_RS08710	0.33	-0.7
1,966,822	+		DDA3937_RS08710	0.41	+1.3
1,966,822	+		DDA3937_RS08710	0.41	-0.4
1,966,823	-		DDA3937_RS08710	0.41	-0.5
1,966,841	-		DDA3937_RS08710	0.43	+0.2
1,967,019	+		DDA3937_RS08710	0.54	+0.2
1,967,019	+		DDA3937_RS08710	0.54	+0.8