Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08165

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,848,116	+		DDA3937_RS08160	0.25	-1.4
1,848,116	+		DDA3937_RS08160	0.25	-1.1
1,848,117	-		DDA3937_RS08160	0.25	-2.1
1,848,117	-		DDA3937_RS08160	0.25	-0.9
1,848,117	-		DDA3937_RS08160	0.25	-0.9
1,848,117	-		DDA3937_RS08160	0.25	-2.1
1,848,117	-		DDA3937_RS08160	0.25	-1.2
1,848,117	-		DDA3937_RS08160	0.25	-0.4
1,848,155	+		DDA3937_RS08160	0.29	+0.1
1,848,155	+		DDA3937_RS08160	0.29	-0.1
1,848,160	+		DDA3937_RS08160	0.30	-1.4
1,848,184	-		DDA3937_RS08160	0.33	-0.6
1,848,213	-		DDA3937_RS08160	0.36	+0.8
1,848,228	+		DDA3937_RS08160	0.37	+0.0
1,848,265	-		DDA3937_RS08160	0.41	-1.6
1,848,267	+		DDA3937_RS08160	0.42	-0.6
1,848,267	+		DDA3937_RS08160	0.42	-0.2
1,848,269	+				+0.4
1,848,324	-		DDA3937_RS08160	0.48	+1.7
1,848,341	-		DDA3937_RS08160	0.50	-0.6
1,848,342	+		DDA3937_RS08160	0.50	-0.4
1,848,342	+		DDA3937_RS08160	0.50	+0.1
1,848,360	+		DDA3937_RS08160	0.52	-0.9
1,848,494	-		DDA3937_RS08160	0.66	-0.5
1,848,582	-		DDA3937_RS08160	0.76	-0.9
1,848,582	-		DDA3937_RS08160	0.76	+0.2
1,848,861	+				+1.4
1,848,862	-				-1.2
1,848,862	-				+0.0
1,848,862	-				-0.7
1,848,872	+				+0.4
1,848,907	+				-1.3
1,848,907	+				+0.3
1,848,908	-				-0.5
1,849,032	+				-1.9
1,849,109	+				-0.9
1,849,143	-				-0.1
1,849,143	-				+0.7
1,849,187	-				+0.0
1,849,209	+				-0.9
1,849,210	-				-0.6
1,849,220	+				+1.0
1,849,221	-				-0.6
1,849,299	-		DDA3937_RS08165	0.14	-0.6
1,849,387	+		DDA3937_RS08165	0.21	-0.5
1,849,406	+		DDA3937_RS08165	0.22	+1.6
1,849,438	+		DDA3937_RS08165	0.25	-0.9
1,849,514	+		DDA3937_RS08165	0.30	-0.8
1,849,515	-		DDA3937_RS08165	0.30	-0.5
1,849,558	-		DDA3937_RS08165	0.34	+2.5
1,849,558	-		DDA3937_RS08165	0.34	-0.3
1,849,558	-		DDA3937_RS08165	0.34	+0.1
1,849,584	-		DDA3937_RS08165	0.36	-2.6
1,849,584	-		DDA3937_RS08165	0.36	+0.7
1,849,591	+		DDA3937_RS08165	0.36	-2.0
1,849,678	+		DDA3937_RS08165	0.43	-1.0
1,849,679	-		DDA3937_RS08165	0.43	-1.9
1,849,686	+		DDA3937_RS08165	0.43	-0.9
1,849,697	+		DDA3937_RS08165	0.44	+1.1
1,849,746	+		DDA3937_RS08165	0.48	-2.1
1,849,748	+		DDA3937_RS08165	0.48	+0.3
1,849,748	+		DDA3937_RS08165	0.48	-1.2
1,849,749	-		DDA3937_RS08165	0.48	+0.4
1,849,749	-		DDA3937_RS08165	0.48	-1.8
1,849,764	-		DDA3937_RS08165	0.49	-0.6
1,849,771	+		DDA3937_RS08165	0.50	+0.1
1,849,771	+		DDA3937_RS08165	0.50	-1.2
1,849,805	+		DDA3937_RS08165	0.52	-0.9
1,849,805	+		DDA3937_RS08165	0.52	-0.9
1,849,806	-		DDA3937_RS08165	0.52	-0.4
1,849,812	-		DDA3937_RS08165	0.53	+1.4
1,849,812	-		DDA3937_RS08165	0.53	-0.3
1,849,829	-		DDA3937_RS08165	0.54	-1.4
1,849,829	-		DDA3937_RS08165	0.54	+0.2
1,849,889	+		DDA3937_RS08165	0.58	-0.7
1,849,890	-		DDA3937_RS08165	0.59	-0.5
1,849,911	+		DDA3937_RS08165	0.60	+0.7
1,849,911	+		DDA3937_RS08165	0.60	-3.7
1,849,912	-		DDA3937_RS08165	0.60	-1.1
1,849,942	+		DDA3937_RS08165	0.62	-0.6
1,849,958	+		DDA3937_RS08165	0.64	-0.9
1,849,958	+		DDA3937_RS08165	0.64	-0.9
1,849,958	+		DDA3937_RS08165	0.64	-1.2
1,849,958	+		DDA3937_RS08165	0.64	+4.0
1,849,959	-		DDA3937_RS08165	0.64	-1.6
1,849,959	-		DDA3937_RS08165	0.64	-0.9
1,849,962	+		DDA3937_RS08165	0.64	-1.6
1,849,962	+		DDA3937_RS08165	0.64	+1.0
1,849,963	-		DDA3937_RS08165	0.64	-0.9
1,849,986	-		DDA3937_RS08165	0.66	-1.9
1,849,992	-				-1.2
1,849,998	-		DDA3937_RS08165	0.67	+1.5
1,850,058	+		DDA3937_RS08165	0.71	-1.2
1,850,059	-		DDA3937_RS08165	0.71	+0.8
1,850,137	+		DDA3937_RS08165	0.77	-0.6
1,850,147	+		DDA3937_RS08165	0.78	-1.1
1,850,148	-		DDA3937_RS08165	0.78	-0.5
1,850,148	-		DDA3937_RS08165	0.78	+0.4
1,850,148	-		DDA3937_RS08165	0.78	-0.8
1,850,162	+		DDA3937_RS08165	0.79	-1.2
1,850,185	+		DDA3937_RS08165	0.81	+0.8
1,850,325	-				-2.1
1,850,363	+				-1.4
1,850,364	-				-1.1
1,850,509	+				-0.0
1,850,509	+				-1.4
1,850,599	-		DDA3937_RS08170	0.15	-0.7
1,850,615	-		DDA3937_RS08170	0.18	+0.8
1,850,743	+		DDA3937_RS08170	0.35	+0.2
1,850,795	+		DDA3937_RS08170	0.42	-1.6
1,850,796	-		DDA3937_RS08170	0.42	-0.6
1,850,805	+		DDA3937_RS08170	0.43	-0.1
1,850,851	+		DDA3937_RS08170	0.49	-1.4
1,850,946	-		DDA3937_RS08170	0.62	+0.7
1,850,947	+		DDA3937_RS08170	0.62	-0.0
1,850,948	-		DDA3937_RS08170	0.62	+1.2
1,850,948	-		DDA3937_RS08170	0.62	+0.4
1,851,011	-		DDA3937_RS08170	0.70	-0.4
1,851,094	+		DDA3937_RS08170	0.81	-0.0
1,851,095	-		DDA3937_RS08170	0.82	+0.4
1,851,182	+				-0.4
1,851,182	+				-0.5
1,851,196	+				+0.5
1,851,197	-				-1.2
1,851,197	-				+0.4
1,851,222	+				-0.1
1,851,222	+				-1.8
1,851,230	+				-1.7
1,851,231	-				-1.0
1,851,236	-				-0.4
1,851,236	-				-0.3
1,851,247	+				-0.8
1,851,247	+				-2.2
1,851,248	-				-0.9
1,851,248	-				-0.9
1,851,248	-				-1.1
1,851,248	-				-0.8
1,851,248	-				+0.2
1,851,292	+				-1.9
1,851,293	-				-0.1
1,851,338	+		DDA3937_RS08175	0.11	+1.7
1,851,338	+		DDA3937_RS08175	0.11	-0.9
1,851,338	+		DDA3937_RS08175	0.11	+0.0
1,851,339	-		DDA3937_RS08175	0.11	-2.3
1,851,339	-		DDA3937_RS08175	0.11	+1.5
1,851,339	-		DDA3937_RS08175	0.11	-0.0
1,851,340	+		DDA3937_RS08175	0.11	+0.7
1,851,340	+		DDA3937_RS08175	0.11	-1.6
1,851,340	+		DDA3937_RS08175	0.11	-1.1
1,851,340	+		DDA3937_RS08175	0.11	-0.9
1,851,340	+		DDA3937_RS08175	0.11	+0.4
1,851,341	-		DDA3937_RS08175	0.11	-1.6
1,851,341	-		DDA3937_RS08175	0.11	-1.1
1,851,341	-		DDA3937_RS08175	0.11	-1.4
1,851,341	-		DDA3937_RS08175	0.11	+0.3
1,851,341	-		DDA3937_RS08175	0.11	-1.2