Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07640

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,720,886	+		DDA3937_RS07630	0.71	+2.3
1,720,886	+		DDA3937_RS07630	0.71	+0.5
1,720,886	+		DDA3937_RS07630	0.71	-0.2
1,720,887	-		DDA3937_RS07630	0.71	+1.3
1,720,887	-		DDA3937_RS07630	0.71	-0.5
1,720,990	+		DDA3937_RS07630	0.80	-0.8
1,720,991	-		DDA3937_RS07630	0.80	-0.3
1,720,991	-		DDA3937_RS07630	0.80	-0.6
1,720,991	-		DDA3937_RS07630	0.80	-1.0
1,720,991	-		DDA3937_RS07630	0.80	-0.6
1,721,044	-		DDA3937_RS07630	0.85	-0.6
1,721,044	-		DDA3937_RS07630	0.85	-0.6
1,721,328	+		DDA3937_RS07635	0.19	-1.6
1,721,328	+		DDA3937_RS07635	0.19	+1.5
1,721,328	+		DDA3937_RS07635	0.19	-2.3
1,721,328	+		DDA3937_RS07635	0.19	+0.4
1,721,329	-		DDA3937_RS07635	0.19	-0.3
1,721,330	+				+0.6
1,721,330	+		DDA3937_RS07635	0.19	-0.4
1,721,330	+		DDA3937_RS07635	0.19	-1.4
1,721,330	+		DDA3937_RS07635	0.19	+1.1
1,721,330	+		DDA3937_RS07635	0.19	-0.1
1,721,331	-		DDA3937_RS07635	0.19	+0.2
1,721,331	-		DDA3937_RS07635	0.19	-1.4
1,721,331	-		DDA3937_RS07635	0.19	+0.8
1,721,500	+		DDA3937_RS07635	0.49	+1.1
1,721,533	+		DDA3937_RS07635	0.55	-2.5
1,721,534	-		DDA3937_RS07635	0.55	-0.4
1,721,534	-		DDA3937_RS07635	0.55	+2.0
1,721,699	+		DDA3937_RS07635	0.85	-0.9
1,721,699	+		DDA3937_RS07635	0.85	-0.0
1,721,700	-		DDA3937_RS07635	0.85	-0.3
1,721,787	+				+1.4
1,721,787	+				-1.0
1,721,788	-				-0.3
1,721,788	-				-0.4
1,721,788	-				-0.6
1,721,803	-				+1.2
1,722,010	+		DDA3937_RS07640	0.30	-0.5
1,722,011	-		DDA3937_RS07640	0.30	-1.3
1,722,011	-				+0.4
1,722,011	-		DDA3937_RS07640	0.30	+0.3
1,722,067	-		DDA3937_RS07640	0.37	-0.4
1,722,067	-		DDA3937_RS07640	0.37	-1.2
1,722,112	+		DDA3937_RS07640	0.43	-1.2
1,722,112	+		DDA3937_RS07640	0.43	-1.6
1,722,113	-		DDA3937_RS07640	0.43	+8.2
1,722,113	-		DDA3937_RS07640	0.43	-0.7
1,722,113	-				-0.2
1,722,113	-		DDA3937_RS07640	0.43	+0.2
1,722,229	+		DDA3937_RS07640	0.59	+0.6
1,722,230	-		DDA3937_RS07640	0.59	-1.2
1,722,263	-		DDA3937_RS07640	0.63	-1.4
1,722,295	-		DDA3937_RS07640	0.68	-0.6
1,722,330	+		DDA3937_RS07640	0.72	+1.3
1,722,330	+		DDA3937_RS07640	0.72	-1.0
1,722,330	+		DDA3937_RS07640	0.72	+0.1
1,722,531	+				+0.1
1,722,532	-				-1.1
1,722,532	-				+0.2
1,722,535	+				-0.5
1,722,535	+				-2.3
1,722,535	+				-0.7
1,722,535	+				-1.2
1,722,535	+				-1.4
1,722,535	+				-0.6
1,722,536	-				+0.6
1,722,536	-				-0.0
1,722,536	-				+0.3
1,722,536	-				-0.3
1,722,536	-				-0.6
1,722,536	-				+0.2
1,722,536	-				+1.1
1,722,536	-				-0.4
1,722,536	-				-0.4
1,722,536	-				-0.3
1,722,536	-				-0.1
1,722,536	-				-0.5
1,722,536	-				-1.4
1,722,536	-				-0.2
1,722,536	-				-0.2
1,722,536	-				-0.0
1,722,536	-				+1.9
1,722,569	+				-0.2
1,722,569	+				-2.2
1,722,570	-				-0.2
1,722,570	-				-2.7
1,722,570	-				-0.4
1,722,570	-				+2.8
1,722,603	+				-1.4
1,722,603	+				+0.0
1,722,604	-				+0.4
1,722,604	-				-0.9
1,722,617	+				-1.4
1,722,617	+				+1.4
1,722,617	+				-0.7
1,722,618	-				+0.4
1,722,618	-				+0.4
1,722,618	-				-1.2
1,722,619	-				+2.2
1,722,651	+				+0.0
1,722,651	+				-0.7
1,722,651	+				-1.4
1,722,651	+				-0.4
1,722,652	-				-1.9
1,722,754	+				-0.2
1,722,755	-				-1.7
1,722,773	-				-0.2
1,722,793	+				+0.1
1,722,793	+				-0.4
1,722,898	+		DDA3937_RS07645	0.19	-1.2
1,722,898	+		DDA3937_RS07645	0.19	-1.4
1,722,898	+		DDA3937_RS07645	0.19	-0.8
1,722,898	+		DDA3937_RS07645	0.19	+4.2
1,722,899	-		DDA3937_RS07645	0.19	-0.4
1,722,899	-		DDA3937_RS07645	0.19	-2.3
1,722,899	-				+1.2
1,722,905	-		DDA3937_RS07645	0.19	-0.4
1,722,905	-				+1.4
1,722,945	+		DDA3937_RS07645	0.24	-0.5
1,722,945	+		DDA3937_RS07645	0.24	-2.0
1,722,945	+		DDA3937_RS07645	0.24	-1.7
1,722,992	+		DDA3937_RS07645	0.29	+0.8
1,722,992	+		DDA3937_RS07645	0.29	-1.7
1,722,993	-		DDA3937_RS07645	0.29	-0.2
1,722,993	-		DDA3937_RS07645	0.29	+0.3
1,722,993	-		DDA3937_RS07645	0.29	-1.2
1,723,056	-		DDA3937_RS07645	0.36	+0.6
1,723,056	-		DDA3937_RS07645	0.36	-0.7
1,723,122	+		DDA3937_RS07645	0.44	+0.4
1,723,122	+		DDA3937_RS07645	0.44	+0.8
1,723,123	-		DDA3937_RS07645	0.44	+2.9
1,723,123	-		DDA3937_RS07645	0.44	+0.3
1,723,134	+		DDA3937_RS07645	0.45	-0.7
1,723,173	+		DDA3937_RS07645	0.50	-3.3
1,723,173	+		DDA3937_RS07645	0.50	+1.4
1,723,174	-		DDA3937_RS07645	0.50	-0.8
1,723,174	-		DDA3937_RS07645	0.50	+0.2
1,723,174	-		DDA3937_RS07645	0.50	-1.2
1,723,174	-		DDA3937_RS07645	0.50	-0.3
1,723,174	-		DDA3937_RS07645	0.50	+1.0
1,723,174	-		DDA3937_RS07645	0.50	-1.2
1,723,174	-		DDA3937_RS07645	0.50	-1.4
1,723,174	-		DDA3937_RS07645	0.50	-0.5
1,723,176	+		DDA3937_RS07645	0.50	-0.0
1,723,176	+		DDA3937_RS07645	0.50	-0.5
1,723,176	+		DDA3937_RS07645	0.50	+0.6
1,723,176	+		DDA3937_RS07645	0.50	-0.5
1,723,176	+		DDA3937_RS07645	0.50	+1.6
1,723,177	-		DDA3937_RS07645	0.50	-1.2
1,723,177	-		DDA3937_RS07645	0.50	+0.4
1,723,177	-		DDA3937_RS07645	0.50	+0.9
1,723,177	-		DDA3937_RS07645	0.50	-1.0
1,723,177	-		DDA3937_RS07645	0.50	-0.2
1,723,237	-		DDA3937_RS07645	0.57	-0.5
1,723,275	+		DDA3937_RS07645	0.61	-1.6
1,723,383	-		DDA3937_RS07645	0.73	+0.7
1,723,430	+				+0.7