Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07505

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07500 and DDA3937_RS07505 are separated by 37 nucleotidesDDA3937_RS07505 and DDA3937_RS07510 are separated by 214 nucleotides DDA3937_RS07500: DDA3937_RS07500 - Gfo/Idh/MocA family oxidoreductase, at 1,693,448 to 1,694,437 _RS07500 DDA3937_RS07505: DDA3937_RS07505 - glutathione-dependent disulfide-bond oxidoreductase, at 1,694,475 to 1,695,338 _RS07505 DDA3937_RS07510: DDA3937_RS07510 - iron-containing alcohol dehydrogenase family protein, at 1,695,553 to 1,696,656 _RS07510 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1693.479 kb on + strandat 1693.480 kb on - strandat 1693.504 kb on - strandat 1693.526 kb on - strandat 1693.536 kb on + strandat 1693.586 kb on + strandat 1693.588 kb on + strand, within DDA3937_RS07500at 1693.588 kb on + strand, within DDA3937_RS07500at 1693.588 kb on + strand, within DDA3937_RS07500at 1693.589 kb on - strand, within DDA3937_RS07500at 1693.589 kb on - strand, within DDA3937_RS07500at 1693.589 kb on - strand, within DDA3937_RS07500at 1693.589 kb on - strand, within DDA3937_RS07500at 1693.604 kb on + strand, within DDA3937_RS07500at 1693.813 kb on + strand, within DDA3937_RS07500at 1693.837 kb on + strand, within DDA3937_RS07500at 1693.838 kb on - strand, within DDA3937_RS07500at 1693.905 kb on - strand, within DDA3937_RS07500at 1693.917 kb on - strand, within DDA3937_RS07500at 1693.925 kb on + strand, within DDA3937_RS07500at 1693.926 kb on - strand, within DDA3937_RS07500at 1693.926 kb on - strand, within DDA3937_RS07500at 1693.939 kb on - strand, within DDA3937_RS07500at 1693.939 kb on - strand, within DDA3937_RS07500at 1693.939 kb on - strand, within DDA3937_RS07500at 1693.939 kb on - strand, within DDA3937_RS07500at 1693.941 kb on + strand, within DDA3937_RS07500at 1693.941 kb on + strand, within DDA3937_RS07500at 1693.982 kb on + strand, within DDA3937_RS07500at 1693.983 kb on - strand, within DDA3937_RS07500at 1693.995 kb on + strand, within DDA3937_RS07500at 1693.995 kb on + strand, within DDA3937_RS07500at 1693.995 kb on + strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.996 kb on - strand, within DDA3937_RS07500at 1693.998 kb on - strand, within DDA3937_RS07500at 1694.000 kb on - strand, within DDA3937_RS07500at 1694.007 kb on - strand, within DDA3937_RS07500at 1694.049 kb on - strand, within DDA3937_RS07500at 1694.049 kb on - strand, within DDA3937_RS07500at 1694.049 kb on - strand, within DDA3937_RS07500at 1694.056 kb on + strand, within DDA3937_RS07500at 1694.057 kb on - strand, within DDA3937_RS07500at 1694.081 kb on - strand, within DDA3937_RS07500at 1694.089 kb on + strand, within DDA3937_RS07500at 1694.116 kb on + strand, within DDA3937_RS07500at 1694.116 kb on + strand, within DDA3937_RS07500at 1694.116 kb on + strand, within DDA3937_RS07500at 1694.116 kb on + strand, within DDA3937_RS07500at 1694.117 kb on - strand, within DDA3937_RS07500at 1694.186 kb on + strand, within DDA3937_RS07500at 1694.203 kb on + strand, within DDA3937_RS07500at 1694.206 kb on - strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.214 kb on + strand, within DDA3937_RS07500at 1694.215 kb on - strand, within DDA3937_RS07500at 1694.215 kb on - strand, within DDA3937_RS07500at 1694.215 kb on - strand, within DDA3937_RS07500at 1694.215 kb on - strand, within DDA3937_RS07500at 1694.215 kb on - strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.218 kb on + strand, within DDA3937_RS07500at 1694.219 kb on - strandat 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strand, within DDA3937_RS07500at 1694.219 kb on - strandat 1694.332 kb on + strand, within DDA3937_RS07500at 1694.332 kb on + strand, within DDA3937_RS07500at 1694.333 kb on - strand, within DDA3937_RS07500at 1694.333 kb on - strand, within DDA3937_RS07500at 1694.377 kb on + strandat 1694.377 kb on + strandat 1694.377 kb on + strandat 1694.378 kb on - strandat 1694.378 kb on - strandat 1694.435 kb on + strandat 1694.470 kb on + strandat 1694.470 kb on + strandat 1694.471 kb on - strandat 1694.471 kb on - strandat 1694.471 kb on - strandat 1694.471 kb on - strandat 1694.674 kb on + strand, within DDA3937_RS07505at 1694.732 kb on + strand, within DDA3937_RS07505at 1694.732 kb on + strand, within DDA3937_RS07505at 1694.732 kb on + strand, within DDA3937_RS07505at 1694.732 kb on + strand, within DDA3937_RS07505at 1694.732 kb on + strand, within DDA3937_RS07505at 1694.732 kb on + strand, within DDA3937_RS07505at 1694.733 kb on - strand, within DDA3937_RS07505at 1694.733 kb on - strand, within DDA3937_RS07505at 1694.733 kb on - strand, within DDA3937_RS07505at 1694.733 kb on - strand, within DDA3937_RS07505at 1694.733 kb on - strand, within DDA3937_RS07505at 1694.733 kb on - strand, within DDA3937_RS07505at 1694.734 kb on + strand, within DDA3937_RS07505at 1694.734 kb on + strand, within DDA3937_RS07505at 1694.753 kb on - strand, within DDA3937_RS07505at 1694.753 kb on - strand, within DDA3937_RS07505at 1694.854 kb on + strand, within DDA3937_RS07505at 1694.854 kb on + strand, within DDA3937_RS07505at 1694.854 kb on + strand, within DDA3937_RS07505at 1694.855 kb on - strand, within DDA3937_RS07505at 1695.056 kb on + strand, within DDA3937_RS07505at 1695.069 kb on + strand, within DDA3937_RS07505at 1695.205 kb on + strand, within DDA3937_RS07505at 1695.206 kb on - strand, within DDA3937_RS07505at 1695.206 kb on - strand, within DDA3937_RS07505at 1695.316 kb on - strandat 1695.319 kb on + strandat 1695.319 kb on + strandat 1695.319 kb on + strandat 1695.320 kb on - strandat 1695.320 kb on - strandat 1695.352 kb on + strandat 1695.352 kb on + strandat 1695.380 kb on + strandat 1695.380 kb on + strandat 1695.380 kb on + strandat 1695.380 kb on + strandat 1695.380 kb on + strandat 1695.381 kb on - strandat 1695.493 kb on - strandat 1695.554 kb on + strandat 1695.555 kb on - strandat 1695.574 kb on + strandat 1695.630 kb on + strandat 1695.750 kb on - strand, within DDA3937_RS07510at 1695.814 kb on + strand, within DDA3937_RS07510at 1695.885 kb on + strand, within DDA3937_RS07510at 1695.886 kb on - strand, within DDA3937_RS07510at 1695.886 kb on - strand, within DDA3937_RS07510at 1696.112 kb on + strand, within DDA3937_RS07510at 1696.113 kb on - strand, within DDA3937_RS07510at 1696.113 kb on - strand, within DDA3937_RS07510at 1696.127 kb on + strand, within DDA3937_RS07510at 1696.263 kb on + strand, within DDA3937_RS07510at 1696.263 kb on + strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.265 kb on + strandat 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.266 kb on - strand, within DDA3937_RS07510at 1696.266 kb on - strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,693,479 + +0.8
1,693,480 - -0.6
1,693,504 - +1.8
1,693,526 - -0.7
1,693,536 + +0.4
1,693,586 + +0.7
1,693,588 + DDA3937_RS07500 0.14 -0.9
1,693,588 + DDA3937_RS07500 0.14 -1.1
1,693,588 + DDA3937_RS07500 0.14 +0.6
1,693,589 - DDA3937_RS07500 0.14 -0.8
1,693,589 - DDA3937_RS07500 0.14 -0.4
1,693,589 - DDA3937_RS07500 0.14 -2.5
1,693,589 - DDA3937_RS07500 0.14 +1.4
1,693,604 + DDA3937_RS07500 0.16 -0.4
1,693,813 + DDA3937_RS07500 0.37 -0.1
1,693,837 + DDA3937_RS07500 0.39 -0.9
1,693,838 - DDA3937_RS07500 0.39 +2.2
1,693,905 - DDA3937_RS07500 0.46 +0.4
1,693,917 - DDA3937_RS07500 0.47 -0.6
1,693,925 + DDA3937_RS07500 0.48 +0.2
1,693,926 - DDA3937_RS07500 0.48 -0.1
1,693,926 - DDA3937_RS07500 0.48 -1.7
1,693,939 - DDA3937_RS07500 0.50 -0.8
1,693,939 - DDA3937_RS07500 0.50 +3.5
1,693,939 - DDA3937_RS07500 0.50 -1.7
1,693,939 - DDA3937_RS07500 0.50 +0.4
1,693,941 + DDA3937_RS07500 0.50 -0.8
1,693,941 + DDA3937_RS07500 0.50 -0.6
1,693,982 + DDA3937_RS07500 0.54 -0.5
1,693,983 - DDA3937_RS07500 0.54 -0.1
1,693,995 + DDA3937_RS07500 0.55 +0.4
1,693,995 + DDA3937_RS07500 0.55 -0.6
1,693,995 + DDA3937_RS07500 0.55 -0.9
1,693,996 - DDA3937_RS07500 0.55 +0.1
1,693,996 - DDA3937_RS07500 0.55 -1.1
1,693,996 - DDA3937_RS07500 0.55 -0.9
1,693,996 - DDA3937_RS07500 0.55 -0.6
1,693,996 - DDA3937_RS07500 0.55 -0.2
1,693,996 - DDA3937_RS07500 0.55 -0.8
1,693,996 - DDA3937_RS07500 0.55 -0.4
1,693,998 - DDA3937_RS07500 0.56 -0.8
1,694,000 - DDA3937_RS07500 0.56 +0.1
1,694,007 - DDA3937_RS07500 0.56 +0.2
1,694,049 - DDA3937_RS07500 0.61 -2.8
1,694,049 - DDA3937_RS07500 0.61 +1.6
1,694,049 - DDA3937_RS07500 0.61 -2.0
1,694,056 + DDA3937_RS07500 0.61 +0.9
1,694,057 - DDA3937_RS07500 0.62 +0.4
1,694,081 - DDA3937_RS07500 0.64 -0.0
1,694,089 + DDA3937_RS07500 0.65 -0.3
1,694,116 + DDA3937_RS07500 0.67 -1.4
1,694,116 + DDA3937_RS07500 0.67 -0.8
1,694,116 + DDA3937_RS07500 0.67 +0.1
1,694,116 + DDA3937_RS07500 0.67 -1.4
1,694,117 - DDA3937_RS07500 0.68 +0.4
1,694,186 + DDA3937_RS07500 0.75 -0.3
1,694,203 + DDA3937_RS07500 0.76 -1.1
1,694,206 - DDA3937_RS07500 0.77 -0.9
1,694,214 + DDA3937_RS07500 0.77 -2.9
1,694,214 + DDA3937_RS07500 0.77 +0.1
1,694,214 + DDA3937_RS07500 0.77 -0.1
1,694,214 + DDA3937_RS07500 0.77 +0.1
1,694,214 + DDA3937_RS07500 0.77 +0.4
1,694,214 + DDA3937_RS07500 0.77 -0.6
1,694,214 + DDA3937_RS07500 0.77 +0.6
1,694,214 + DDA3937_RS07500 0.77 +0.1
1,694,214 + DDA3937_RS07500 0.77 -1.4
1,694,215 - DDA3937_RS07500 0.77 +0.6
1,694,215 - DDA3937_RS07500 0.77 -0.5
1,694,215 - DDA3937_RS07500 0.77 +1.0
1,694,215 - DDA3937_RS07500 0.77 -0.6
1,694,215 - DDA3937_RS07500 0.77 +1.4
1,694,218 + DDA3937_RS07500 0.78 -0.3
1,694,218 + DDA3937_RS07500 0.78 +0.9
1,694,218 + DDA3937_RS07500 0.78 -0.5
1,694,218 + DDA3937_RS07500 0.78 +0.7
1,694,218 + DDA3937_RS07500 0.78 -0.9
1,694,218 + DDA3937_RS07500 0.78 -1.1
1,694,218 + DDA3937_RS07500 0.78 -0.6
1,694,219 - -0.9
1,694,219 - DDA3937_RS07500 0.78 +0.4
1,694,219 - DDA3937_RS07500 0.78 -1.1
1,694,219 - DDA3937_RS07500 0.78 -0.1
1,694,219 - DDA3937_RS07500 0.78 -1.1
1,694,219 - DDA3937_RS07500 0.78 -0.4
1,694,219 - DDA3937_RS07500 0.78 -0.8
1,694,219 - DDA3937_RS07500 0.78 +0.1
1,694,219 - DDA3937_RS07500 0.78 -1.6
1,694,219 - DDA3937_RS07500 0.78 +1.3
1,694,219 - +0.4
1,694,332 + DDA3937_RS07500 0.89 +0.7
1,694,332 + DDA3937_RS07500 0.89 -1.9
1,694,333 - DDA3937_RS07500 0.89 +0.6
1,694,333 - DDA3937_RS07500 0.89 +0.5
1,694,377 + +1.6
1,694,377 + -0.6
1,694,377 + +0.4
1,694,378 - -0.4
1,694,378 - -2.3
1,694,435 + +0.0
1,694,470 + +0.4
1,694,470 + -1.1
1,694,471 - -0.4
1,694,471 - -2.4
1,694,471 - -0.7
1,694,471 - -0.8
1,694,674 + DDA3937_RS07505 0.23 +0.3
1,694,732 + DDA3937_RS07505 0.30 -2.6
1,694,732 + DDA3937_RS07505 0.30 +6.5
1,694,732 + DDA3937_RS07505 0.30 +2.5
1,694,732 + DDA3937_RS07505 0.30 -0.6
1,694,732 + DDA3937_RS07505 0.30 -0.3
1,694,732 + DDA3937_RS07505 0.30 -0.6
1,694,733 - DDA3937_RS07505 0.30 +0.6
1,694,733 - DDA3937_RS07505 0.30 +0.9
1,694,733 - DDA3937_RS07505 0.30 +0.6
1,694,733 - DDA3937_RS07505 0.30 +0.4
1,694,733 - DDA3937_RS07505 0.30 -0.0
1,694,733 - DDA3937_RS07505 0.30 -1.7
1,694,734 + DDA3937_RS07505 0.30 -1.4
1,694,734 + DDA3937_RS07505 0.30 -0.1
1,694,753 - DDA3937_RS07505 0.32 -2.1
1,694,753 - DDA3937_RS07505 0.32 -1.1
1,694,854 + DDA3937_RS07505 0.44 -0.6
1,694,854 + DDA3937_RS07505 0.44 -1.6
1,694,854 + DDA3937_RS07505 0.44 +1.7
1,694,855 - DDA3937_RS07505 0.44 +1.3
1,695,056 + DDA3937_RS07505 0.67 -0.5
1,695,069 + DDA3937_RS07505 0.69 +0.0
1,695,205 + DDA3937_RS07505 0.84 -1.5
1,695,206 - DDA3937_RS07505 0.85 +0.3
1,695,206 - DDA3937_RS07505 0.85 +1.0
1,695,316 - -0.9
1,695,319 + -0.6
1,695,319 + -0.9
1,695,319 + +0.6
1,695,320 - -0.1
1,695,320 - -0.7
1,695,352 + +0.4
1,695,352 + +0.5
1,695,380 + +0.3
1,695,380 + +1.4
1,695,380 + +0.5
1,695,380 + -0.3
1,695,380 + +0.7
1,695,381 - +0.1
1,695,493 - -0.3
1,695,554 + -0.2
1,695,555 - -0.4
1,695,574 + +0.2
1,695,630 + +0.5
1,695,750 - DDA3937_RS07510 0.18 +0.7
1,695,814 + DDA3937_RS07510 0.24 -1.0
1,695,885 + DDA3937_RS07510 0.30 -0.7
1,695,886 - DDA3937_RS07510 0.30 -0.5
1,695,886 - DDA3937_RS07510 0.30 -1.6
1,696,112 + DDA3937_RS07510 0.51 +0.4
1,696,113 - DDA3937_RS07510 0.51 -0.9
1,696,113 - DDA3937_RS07510 0.51 +0.1
1,696,127 + DDA3937_RS07510 0.52 +0.4
1,696,263 + DDA3937_RS07510 0.64 -0.9
1,696,263 + DDA3937_RS07510 0.64 -0.7
1,696,264 - DDA3937_RS07510 0.64 +0.3
1,696,264 - DDA3937_RS07510 0.64 -1.6
1,696,264 - DDA3937_RS07510 0.64 +0.1
1,696,264 - DDA3937_RS07510 0.64 -2.6
1,696,265 + +2.2
1,696,265 + DDA3937_RS07510 0.64 -1.8
1,696,265 + DDA3937_RS07510 0.64 -1.1
1,696,265 + DDA3937_RS07510 0.64 +0.1
1,696,265 + DDA3937_RS07510 0.64 +0.9
1,696,265 + DDA3937_RS07510 0.64 -2.3
1,696,266 - DDA3937_RS07510 0.65 +0.5
1,696,266 - DDA3937_RS07510 0.65 +0.1
1,696,267 + DDA3937_RS07510 0.65 -0.1
1,696,267 + DDA3937_RS07510 0.65 -0.1
1,696,267 + DDA3937_RS07510 0.65 +0.4
1,696,267 + DDA3937_RS07510 0.65 -0.1
1,696,267 + DDA3937_RS07510 0.65 -0.4
1,696,267 + DDA3937_RS07510 0.65 -3.0
1,696,267 + DDA3937_RS07510 0.65 -1.3
1,696,267 + DDA3937_RS07510 0.65 +1.2
1,696,267 + DDA3937_RS07510 0.65 -0.3
1,696,267 + DDA3937_RS07510 0.65 -0.6
1,696,267 + DDA3937_RS07510 0.65 +0.4
1,696,267 + DDA3937_RS07510 0.65 +0.3
1,696,268 - DDA3937_RS07510 0.65 -0.6
1,696,268 - DDA3937_RS07510 0.65 +0.4
1,696,268 - DDA3937_RS07510 0.65 -1.0
1,696,268 - DDA3937_RS07510 0.65 -0.8
1,696,268 - DDA3937_RS07510 0.65 -0.4
1,696,268 - DDA3937_RS07510 0.65 -1.3
1,696,268 - DDA3937_RS07510 0.65 -0.9
1,696,268 - DDA3937_RS07510 0.65 -0.3
1,696,268 - DDA3937_RS07510 0.65 +2.4
1,696,268 - DDA3937_RS07510 0.65 -0.8
1,696,268 - DDA3937_RS07510 0.65 -0.9
1,696,268 - DDA3937_RS07510 0.65 -0.7

Or see this region's nucleotide sequence