Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07310

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,647,318	+		DDA3937_RS07300	0.61	-0.6
1,647,318	+		DDA3937_RS07300	0.61	-0.1
1,647,319	-		DDA3937_RS07300	0.61	+3.5
1,647,354	+		DDA3937_RS07300	0.66	-0.4
1,647,354	+		DDA3937_RS07300	0.66	-0.3
1,647,456	+		DDA3937_RS07300	0.79	-1.3
1,647,456	+		DDA3937_RS07300	0.79	+1.2
1,647,457	-		DDA3937_RS07300	0.80	-1.1
1,647,457	-		DDA3937_RS07300	0.80	-0.5
1,647,459	+		DDA3937_RS07300	0.80	-0.5
1,647,459	+		DDA3937_RS07300	0.80	-0.4
1,647,460	-		DDA3937_RS07300	0.80	-0.1
1,647,468	+		DDA3937_RS07300	0.81	-0.7
1,647,484	+		DDA3937_RS07300	0.83	+1.1
1,647,484	+		DDA3937_RS07300	0.83	-0.7
1,647,484	+		DDA3937_RS07300	0.83	+0.0
1,647,525	+		DDA3937_RS07300	0.88	+0.9
1,647,551	+				-0.2
1,647,653	+				+0.3
1,647,731	-				-0.1
1,647,743	+				-1.5
1,647,743	+				+1.5
1,647,744	-				-1.7
1,647,744	-				+1.6
1,647,841	+				-1.7
1,647,841	+				-1.7
1,647,841	+				-1.1
1,647,842	-				-1.1
1,647,842	-				+0.6
1,647,842	-				+0.7
1,647,907	-		DDA3937_RS07305	0.19	-0.4
1,647,907	-		DDA3937_RS07305	0.19	+0.6
1,647,956	+		DDA3937_RS07305	0.29	-0.1
1,647,956	+		DDA3937_RS07305	0.29	+0.8
1,647,956	+		DDA3937_RS07305	0.29	-0.8
1,647,957	-		DDA3937_RS07305	0.29	-0.5
1,647,957	-		DDA3937_RS07305	0.29	-1.5
1,647,960	+		DDA3937_RS07305	0.30	-1.1
1,647,960	+		DDA3937_RS07305	0.30	+0.5
1,647,960	+		DDA3937_RS07305	0.30	-1.5
1,647,960	+		DDA3937_RS07305	0.30	-0.5
1,647,960	+		DDA3937_RS07305	0.30	-1.0
1,647,960	+		DDA3937_RS07305	0.30	+2.1
1,647,960	+		DDA3937_RS07305	0.30	-0.8
1,647,961	-		DDA3937_RS07305	0.30	+0.7
1,647,962	+		DDA3937_RS07305	0.30	-1.7
1,647,963	-		DDA3937_RS07305	0.31	-0.9
1,647,963	-		DDA3937_RS07305	0.31	-0.1
1,648,194	+		DDA3937_RS07305	0.80	+0.1
1,648,253	-				+0.2
1,648,273	+				+0.2
1,648,273	+				+0.3
1,648,273	+				+1.2
1,648,273	+				-0.6
1,648,273	+				+0.5
1,648,274	-				-1.0
1,648,274	-				-1.1
1,648,278	+				+0.9
1,648,279	-				+0.9
1,648,279	-				-0.1
1,648,287	+				+1.0
1,648,287	+				-0.0
1,648,287	+				-0.0
1,648,309	+				-0.0
1,648,310	-				-1.1
1,648,348	+				+1.0
1,648,409	+				-1.9
1,648,410	-				+0.7
1,648,412	+				+1.5
1,648,413	-				+0.6
1,648,421	+				+0.3
1,648,422	-		DDA3937_RS07310	0.10	+2.6
1,648,454	+		DDA3937_RS07310	0.13	+0.6
1,648,454	+		DDA3937_RS07310	0.13	-2.0
1,648,454	+		DDA3937_RS07310	0.13	+0.7
1,648,454	+		DDA3937_RS07310	0.13	-0.2
1,648,454	+		DDA3937_RS07310	0.13	-0.1
1,648,454	+		DDA3937_RS07310	0.13	+0.5
1,648,454	+		DDA3937_RS07310	0.13	+0.1
1,648,454	+		DDA3937_RS07310	0.13	+0.9
1,648,454	+		DDA3937_RS07310	0.13	-0.0
1,648,454	+		DDA3937_RS07310	0.13	-0.1
1,648,455	-		DDA3937_RS07310	0.13	+0.5
1,648,455	-		DDA3937_RS07310	0.13	+0.2
1,648,455	-		DDA3937_RS07310	0.13	+0.5
1,648,532	+		DDA3937_RS07310	0.19	-0.1
1,648,532	+		DDA3937_RS07310	0.19	-0.1
1,648,533	-		DDA3937_RS07310	0.19	-2.1
1,648,533	-		DDA3937_RS07310	0.19	+1.0
1,648,564	+		DDA3937_RS07310	0.22	-1.5
1,648,644	-		DDA3937_RS07310	0.29	-0.7
1,648,644	-		DDA3937_RS07310	0.29	+2.5
1,648,644	-		DDA3937_RS07310	0.29	-0.5
1,648,661	+		DDA3937_RS07310	0.30	-0.1
1,648,661	+		DDA3937_RS07310	0.30	-0.4
1,648,661	+		DDA3937_RS07310	0.30	-1.5
1,648,662	-		DDA3937_RS07310	0.30	-2.0
1,648,662	-		DDA3937_RS07310	0.30	+0.3
1,648,662	-		DDA3937_RS07310	0.30	+0.6
1,648,662	-		DDA3937_RS07310	0.30	-2.4
1,648,662	-		DDA3937_RS07310	0.30	+3.6
1,648,662	-		DDA3937_RS07310	0.30	-0.4
1,648,855	+		DDA3937_RS07310	0.47	-1.0
1,648,856	-		DDA3937_RS07310	0.47	+0.9
1,648,859	-		DDA3937_RS07310	0.47	+0.1
1,648,859	-		DDA3937_RS07310	0.47	-0.1
1,648,885	+		DDA3937_RS07310	0.49	-0.1
1,648,905	+		DDA3937_RS07310	0.51	-0.7
1,648,905	+		DDA3937_RS07310	0.51	-1.3
1,648,905	+		DDA3937_RS07310	0.51	-0.4
1,648,906	-		DDA3937_RS07310	0.51	-1.0
1,648,906	-		DDA3937_RS07310	0.51	-0.7
1,648,906	-		DDA3937_RS07310	0.51	-2.5
1,648,912	+		DDA3937_RS07310	0.52	-2.8
1,648,912	+				+0.2
1,648,912	+		DDA3937_RS07310	0.52	-1.1
1,648,912	+		DDA3937_RS07310	0.52	-0.6
1,648,913	-		DDA3937_RS07310	0.52	-0.3
1,648,913	-		DDA3937_RS07310	0.52	-2.8
1,648,913	-		DDA3937_RS07310	0.52	-0.5
1,648,913	-		DDA3937_RS07310	0.52	-0.5
1,648,913	-		DDA3937_RS07310	0.52	-2.8
1,648,913	-		DDA3937_RS07310	0.52	-1.1
1,648,913	-		DDA3937_RS07310	0.52	-0.8
1,648,913	-				-0.1
1,648,917	-		DDA3937_RS07310	0.52	-0.1
1,648,961	+		DDA3937_RS07310	0.56	+0.5
1,648,962	-		DDA3937_RS07310	0.56	-0.1
1,648,962	-		DDA3937_RS07310	0.56	-1.6
1,648,999	+		DDA3937_RS07310	0.59	+0.6
1,649,123	+		DDA3937_RS07310	0.69	-1.4
1,649,123	+		DDA3937_RS07310	0.69	-0.4
1,649,124	-		DDA3937_RS07310	0.70	+0.6
1,649,139	+		DDA3937_RS07310	0.71	-0.8
1,649,141	+		DDA3937_RS07310	0.71	-0.7
1,649,141	+		DDA3937_RS07310	0.71	+2.0
1,649,154	+		DDA3937_RS07310	0.72	+1.3
1,649,154	+		DDA3937_RS07310	0.72	-1.2
1,649,155	-		DDA3937_RS07310	0.72	+1.1
1,649,155	-		DDA3937_RS07310	0.72	-2.5
1,649,155	-		DDA3937_RS07310	0.72	-0.6
1,649,292	+		DDA3937_RS07310	0.84	+1.9
1,649,292	+		DDA3937_RS07310	0.84	-0.8
1,649,292	+		DDA3937_RS07310	0.84	-2.4
1,649,293	-		DDA3937_RS07310	0.84	-0.6
1,649,293	-		DDA3937_RS07310	0.84	-0.4
1,649,296	+		DDA3937_RS07310	0.84	-0.1
1,649,335	+		DDA3937_RS07310	0.87	+0.5
1,649,336	-		DDA3937_RS07310	0.88	-1.5
1,649,336	-		DDA3937_RS07310	0.88	-0.3
1,649,336	-		DDA3937_RS07310	0.88	+0.5
1,649,336	-		DDA3937_RS07310	0.88	+0.6
1,649,397	-				-1.0
1,649,501	+				-0.4
1,649,657	+		DDA3937_RS07315	0.11	-0.9
1,649,671	+		DDA3937_RS07315	0.12	-1.0
1,649,671	+				+6.4
1,649,671	+		DDA3937_RS07315	0.12	+0.7
1,649,672	-		DDA3937_RS07315	0.12	-0.6
1,649,672	-		DDA3937_RS07315	0.12	-0.4
1,649,735	-		DDA3937_RS07315	0.16	-0.5
1,649,738	+		DDA3937_RS07315	0.16	+0.6
1,649,850	+		DDA3937_RS07315	0.23	-0.1
1,649,850	+		DDA3937_RS07315	0.23	+0.6
1,649,985	+		DDA3937_RS07315	0.32	+0.0
1,649,985	+		DDA3937_RS07315	0.32	-0.6
1,649,985	+		DDA3937_RS07315	0.32	-1.4
1,649,985	+		DDA3937_RS07315	0.32	-2.0
1,649,985	+		DDA3937_RS07315	0.32	-1.3
1,649,985	+		DDA3937_RS07315	0.32	-1.5
1,649,985	+		DDA3937_RS07315	0.32	+1.7
1,649,986	-		DDA3937_RS07315	0.32	+0.1
1,649,986	-		DDA3937_RS07315	0.32	-0.4
1,649,986	-		DDA3937_RS07315	0.32	-0.4
1,650,099	+		DDA3937_RS07315	0.40	-0.1
1,650,099	+		DDA3937_RS07315	0.40	+0.1
1,650,099	+		DDA3937_RS07315	0.40	-1.4
1,650,099	+		DDA3937_RS07315	0.40	-0.3
1,650,099	+		DDA3937_RS07315	0.40	-0.1
1,650,099	+		DDA3937_RS07315	0.40	-0.3
1,650,099	+		DDA3937_RS07315	0.40	-1.0
1,650,099	+		DDA3937_RS07315	0.40	-0.3
1,650,099	+		DDA3937_RS07315	0.40	-0.9
1,650,305	+		DDA3937_RS07315	0.53	+0.2
1,650,311	+		DDA3937_RS07315	0.54	-0.6
1,650,393	+		DDA3937_RS07315	0.59	+1.9
1,650,394	-		DDA3937_RS07315	0.59	-0.9