Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06620

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,477,541	-		DDA3937_RS06615	0.30	-2.1
1,477,541	-		DDA3937_RS06615	0.30	-3.8
1,477,548	+		DDA3937_RS06615	0.31	-1.9
1,477,548	+		DDA3937_RS06615	0.31	-2.1
1,477,548	+		DDA3937_RS06615	0.31	-1.5
1,477,549	-		DDA3937_RS06615	0.31	-4.0
1,477,549	-		DDA3937_RS06615	0.31	-1.7
1,477,550	+		DDA3937_RS06615	0.31	-2.6
1,477,550	+		DDA3937_RS06615	0.31	-0.7
1,477,550	+		DDA3937_RS06615	0.31	-2.8
1,477,550	+		DDA3937_RS06615	0.31	-4.2
1,477,550	+		DDA3937_RS06615	0.31	-1.9
1,477,550	+		DDA3937_RS06615	0.31	-1.1
1,477,550	+		DDA3937_RS06615	0.31	-2.5
1,477,550	+		DDA3937_RS06615	0.31	-2.2
1,477,550	+		DDA3937_RS06615	0.31	+0.1
1,477,550	+		DDA3937_RS06615	0.31	-1.1
1,477,550	+		DDA3937_RS06615	0.31	-1.8
1,477,550	+		DDA3937_RS06615	0.31	-3.3
1,477,550	+		DDA3937_RS06615	0.31	-2.5
1,477,550	+		DDA3937_RS06615	0.31	-0.7
1,477,550	+		DDA3937_RS06615	0.31	-0.8
1,477,550	+		DDA3937_RS06615	0.31	-2.4
1,477,550	+		DDA3937_RS06615	0.31	-2.0
1,477,550	+		DDA3937_RS06615	0.31	-1.3
1,477,551	-		DDA3937_RS06615	0.31	-1.8
1,477,551	-		DDA3937_RS06615	0.31	-3.3
1,477,551	-		DDA3937_RS06615	0.31	-2.5
1,477,551	-		DDA3937_RS06615	0.31	-1.1
1,477,551	-		DDA3937_RS06615	0.31	-2.7
1,477,551	-		DDA3937_RS06615	0.31	+0.6
1,477,551	-		DDA3937_RS06615	0.31	-1.1
1,477,551	-		DDA3937_RS06615	0.31	-2.6
1,477,551	-		DDA3937_RS06615	0.31	+0.5
1,477,551	-		DDA3937_RS06615	0.31	-2.6
1,477,551	-		DDA3937_RS06615	0.31	-1.5
1,477,640	+		DDA3937_RS06615	0.40	-1.9
1,477,640	+		DDA3937_RS06615	0.40	-2.0
1,477,640	+		DDA3937_RS06615	0.40	-1.6
1,477,640	+		DDA3937_RS06615	0.40	-3.1
1,477,640	+		DDA3937_RS06615	0.40	-0.8
1,477,640	+		DDA3937_RS06615	0.40	-3.2
1,477,640	+		DDA3937_RS06615	0.40	-1.0
1,477,641	-		DDA3937_RS06615	0.40	-3.4
1,477,641	-		DDA3937_RS06615	0.40	-2.0
1,477,641	-		DDA3937_RS06615	0.40	-4.0
1,477,641	-		DDA3937_RS06615	0.40	-1.8
1,477,653	+		DDA3937_RS06615	0.41	-1.4
1,477,718	+		DDA3937_RS06615	0.48	-3.4
1,477,780	+		DDA3937_RS06615	0.54	-1.9
1,477,780	+		DDA3937_RS06615	0.54	-0.7
1,477,780	+		DDA3937_RS06615	0.54	-0.7
1,477,780	+		DDA3937_RS06615	0.54	-2.2
1,477,780	+		DDA3937_RS06615	0.54	-1.3
1,477,781	-		DDA3937_RS06615	0.54	-2.9
1,477,781	-		DDA3937_RS06615	0.54	-4.3
1,477,781	-		DDA3937_RS06615	0.54	-3.6
1,477,781	-		DDA3937_RS06615	0.54	-2.1
1,477,865	+		DDA3937_RS06615	0.62	-3.5
1,477,865	+		DDA3937_RS06615	0.62	+0.3
1,477,865	+		DDA3937_RS06615	0.62	-1.7
1,477,866	-		DDA3937_RS06615	0.62	-0.1
1,477,866	-		DDA3937_RS06615	0.62	-1.5
1,477,866	-		DDA3937_RS06615	0.62	-3.6
1,477,866	-		DDA3937_RS06615	0.62	-0.5
1,477,866	-		DDA3937_RS06615	0.62	-2.3
1,477,943	+		DDA3937_RS06615	0.70	-2.0
1,477,943	+		DDA3937_RS06615	0.70	-1.6
1,477,943	+		DDA3937_RS06615	0.70	-1.7
1,477,944	-		DDA3937_RS06615	0.70	-3.1
1,477,944	-		DDA3937_RS06615	0.70	-1.5
1,477,944	-		DDA3937_RS06615	0.70	-1.3
1,477,958	+		DDA3937_RS06615	0.71	+0.9
1,477,959	-		DDA3937_RS06615	0.72	-2.2
1,477,959	-		DDA3937_RS06615	0.72	-4.4
1,477,961	+		DDA3937_RS06615	0.72	-1.2
1,477,961	+		DDA3937_RS06615	0.72	-0.7
1,477,961	+		DDA3937_RS06615	0.72	-0.1
1,477,961	+		DDA3937_RS06615	0.72	-0.7
1,477,962	-		DDA3937_RS06615	0.72	-3.9
1,477,962	-		DDA3937_RS06615	0.72	-1.3
1,477,962	-		DDA3937_RS06615	0.72	-3.8
1,477,962	-		DDA3937_RS06615	0.72	-5.2
1,477,991	-		DDA3937_RS06615	0.75	-2.9
1,477,991	-		DDA3937_RS06615	0.75	-1.4
1,477,991	-		DDA3937_RS06615	0.75	-3.0
1,477,998	+		DDA3937_RS06615	0.75	+0.1
1,478,028	+				-0.5
1,478,029	-		DDA3937_RS06615	0.78	-2.0
1,478,046	+		DDA3937_RS06615	0.80	-0.1
1,478,047	-		DDA3937_RS06615	0.80	+1.4
1,478,047	-		DDA3937_RS06615	0.80	-2.4
1,478,084	+		DDA3937_RS06615	0.84	-1.5
1,478,084	+		DDA3937_RS06615	0.84	-0.1
1,478,085	-				-0.1
1,478,085	-		DDA3937_RS06615	0.84	-2.1
1,478,085	-		DDA3937_RS06615	0.84	-0.8
1,478,194	+				-1.1
1,478,194	+				-3.8
1,478,194	+				-2.4
1,478,194	+				-1.3
1,478,195	-				-1.5
1,478,195	-				-1.5
1,478,195	-				-1.7
1,478,195	-				-3.8
1,478,202	+				-2.0
1,478,319	+				+0.2
1,478,319	+				-2.5
1,478,319	+				-0.3
1,478,320	-				+0.3
1,478,320	-				+1.3
1,478,320	-				-0.1
1,478,320	-				-0.5
1,478,323	+				-1.6
1,478,323	+				-1.2
1,478,329	+				+1.1
1,478,333	+				-0.4
1,478,333	+				-2.0
1,478,341	+				+0.0
1,478,341	+				-1.3
1,478,342	-				-1.4
1,478,342	-				+0.2
1,478,342	-				-0.7
1,478,373	+				-1.5
1,478,373	+				-1.5
1,478,373	+				+2.2
1,478,374	-				-0.0
1,478,386	+				-1.2
1,478,386	+				-0.1
1,478,386	+				-1.5
1,478,386	+				-0.3
1,478,386	+				+1.8
1,478,386	+				+0.1
1,478,386	+				-0.9
1,478,386	+				+1.1
1,478,386	+				+0.1
1,478,386	+				-0.4
1,478,386	+				-0.8
1,478,386	+				+0.5
1,478,386	+				-0.8
1,478,386	+				-1.8
1,478,386	+				-0.9
1,478,386	+				-0.9
1,478,386	+				-0.6
1,478,386	+				+0.3
1,478,386	+				-0.5
1,478,386	+				-1.5
1,478,386	+				-0.3
1,478,386	+				-0.0
1,478,386	+				-0.5
1,478,386	+				-2.2
1,478,386	+				-0.5
1,478,386	+				+0.3
1,478,386	+				-0.0
1,478,386	+				-0.0
1,478,386	+				-1.2
1,478,386	+				-2.2
1,478,386	+				-0.8
1,478,386	+				-2.5
1,478,387	-				+0.3
1,478,387	-				+1.5
1,478,387	-				-0.8
1,478,387	-				+0.1
1,478,387	-				-0.4
1,478,387	-				-0.6
1,478,387	-				-1.2
1,478,387	-				+0.3
1,478,387	-				-1.1
1,478,387	-				-0.4
1,478,387	-				-2.3
1,478,387	-				+1.0
1,478,387	-				-0.3
1,478,389	+				-0.1
1,478,389	+				+0.3
1,478,389	+				-0.8
1,478,389	+				+0.4
1,478,389	+				+1.1
1,478,389	+				+2.0
1,478,389	+				+2.1
1,478,389	+				-1.3
1,478,390	-				-0.2
1,478,390	-				-0.7
1,478,390	-				+1.0
1,478,390	-				-0.5
1,478,411	+				-1.4
1,478,411	+				-1.4
1,478,411	+				+0.5
1,478,412	-				+0.5
1,478,668	+		DDA3937_RS06620	0.12	-1.4
1,478,669	-		DDA3937_RS06620	0.12	+6.3
1,478,698	+		DDA3937_RS06620	0.14	-0.4
1,478,699	-		DDA3937_RS06620	0.14	-1.8
1,478,856	-		DDA3937_RS06620	0.25	+0.6
1,478,856	-		DDA3937_RS06620	0.25	-0.1
1,478,919	-		DDA3937_RS06620	0.29	+0.8
1,479,054	+		DDA3937_RS06620	0.38	+2.3
1,479,155	+		DDA3937_RS06620	0.45	-1.5
1,479,156	-		DDA3937_RS06620	0.45	-1.1
1,479,330	+		DDA3937_RS06620	0.57	-1.3
1,479,331	-		DDA3937_RS06620	0.57	+1.5
1,479,331	-		DDA3937_RS06620	0.57	-1.1
1,479,373	-		DDA3937_RS06620	0.60	+0.5
1,479,560	+		DDA3937_RS06620	0.73	-1.5
1,479,560	+		DDA3937_RS06620	0.73	+0.9
1,479,560	+		DDA3937_RS06620	0.73	+0.8
1,479,561	-		DDA3937_RS06620	0.73	+1.2
1,479,561	-		DDA3937_RS06620	0.73	+0.8
1,479,561	-		DDA3937_RS06620	0.73	-0.8
1,479,561	-				+1.5
1,479,991	+				+1.5
1,480,005	-				+0.1
1,480,097	+				+0.1
1,480,097	+				-0.7
1,480,117	+				+0.9
1,480,117	+				+2.9
1,480,118	-				-0.1
1,480,132	+		DDA3937_RS06625	0.10	-2.0
1,480,133	-		DDA3937_RS06625	0.10	+1.0
1,480,133	-		DDA3937_RS06625	0.10	+1.1
1,480,133	-		DDA3937_RS06625	0.10	+1.5
1,480,299	+		DDA3937_RS06625	0.31	+5.2
1,480,299	+		DDA3937_RS06625	0.31	-0.7
1,480,300	-		DDA3937_RS06625	0.31	+0.4
1,480,303	+		DDA3937_RS06625	0.32	-0.4
1,480,304	-		DDA3937_RS06625	0.32	-0.2
1,480,401	+		DDA3937_RS06625	0.44	-1.8
1,480,401	+		DDA3937_RS06625	0.44	-1.2
1,480,405	+		DDA3937_RS06625	0.45	-0.3
1,480,405	+		DDA3937_RS06625	0.45	+0.2
1,480,405	+		DDA3937_RS06625	0.45	-0.7
1,480,405	+		DDA3937_RS06625	0.45	-0.5
1,480,405	+		DDA3937_RS06625	0.45	-0.5
1,480,405	+		DDA3937_RS06625	0.45	-1.5
1,480,405	+		DDA3937_RS06625	0.45	+0.2
1,480,405	+		DDA3937_RS06625	0.45	-0.8
1,480,405	+		DDA3937_RS06625	0.45	-1.0
1,480,405	+		DDA3937_RS06625	0.45	-0.1
1,480,405	+		DDA3937_RS06625	0.45	-0.5
1,480,405	+		DDA3937_RS06625	0.45	-0.7
1,480,406	-		DDA3937_RS06625	0.45	-0.2
1,480,406	-		DDA3937_RS06625	0.45	+0.0
1,480,406	-		DDA3937_RS06625	0.45	-0.7
1,480,406	-		DDA3937_RS06625	0.45	+1.5
1,480,406	-		DDA3937_RS06625	0.45	-1.1
1,480,406	-		DDA3937_RS06625	0.45	+0.8
1,480,406	-		DDA3937_RS06625	0.45	-0.1
1,480,406	-		DDA3937_RS06625	0.45	+0.4
1,480,513	+		DDA3937_RS06625	0.58	-0.1
1,480,514	-		DDA3937_RS06625	0.58	+0.8
1,480,514	-		DDA3937_RS06625	0.58	+1.7
1,480,514	-		DDA3937_RS06625	0.58	-0.2
1,480,537	+		DDA3937_RS06625	0.61	-1.2
1,480,537	+		DDA3937_RS06625	0.61	-0.3
1,480,537	+		DDA3937_RS06625	0.61	-0.5
1,480,538	-		DDA3937_RS06625	0.61	+1.0
1,480,538	-		DDA3937_RS06625	0.61	-1.2
1,480,538	-		DDA3937_RS06625	0.61	+0.7
1,480,577	+		DDA3937_RS06625	0.66	-0.6
1,480,577	+		DDA3937_RS06625	0.66	-0.3
1,480,577	+		DDA3937_RS06625	0.66	-0.0
1,480,577	+		DDA3937_RS06625	0.66	+1.1
1,480,578	-		DDA3937_RS06625	0.67	+1.0
1,480,578	-		DDA3937_RS06625	0.67	-0.4
1,480,578	-		DDA3937_RS06625	0.67	-2.2
1,480,578	-		DDA3937_RS06625	0.67	-0.6
1,480,578	-		DDA3937_RS06625	0.67	+0.3
1,480,709	+		DDA3937_RS06625	0.83	+0.0
1,480,710	-		DDA3937_RS06625	0.83	+0.5
1,480,710	-		DDA3937_RS06625	0.83	-0.8
1,480,876	+				+1.1
1,480,876	+				+0.8
1,480,876	+				+0.5
1,480,926	-				-1.2
1,480,943	+				-1.1
1,480,959	+				+0.5