Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06250

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,399,520	-		DDA3937_RS06245	0.35	-0.8
1,399,520	-		DDA3937_RS06245	0.35	+0.9
1,399,619	-		DDA3937_RS06245	0.45	-0.6
1,399,807	-		DDA3937_RS06245	0.62	-0.5
1,399,807	-		DDA3937_RS06245	0.62	-0.0
1,399,807	-				+1.5
1,399,807	-		DDA3937_RS06245	0.62	-1.5
1,399,809	-		DDA3937_RS06245	0.63	-0.3
1,399,809	-		DDA3937_RS06245	0.63	+1.5
1,399,809	-		DDA3937_RS06245	0.63	+0.4
1,399,809	-		DDA3937_RS06245	0.63	+0.5
1,399,820	-		DDA3937_RS06245	0.64	-0.9
1,399,820	-		DDA3937_RS06245	0.64	-1.1
1,399,820	-		DDA3937_RS06245	0.64	-0.8
1,400,003	-		DDA3937_RS06245	0.81	-0.6
1,400,003	-		DDA3937_RS06245	0.81	-1.5
1,400,003	-		DDA3937_RS06245	0.81	+0.3
1,400,003	-		DDA3937_RS06245	0.81	-1.3
1,400,003	-		DDA3937_RS06245	0.81	-0.5
1,400,066	+		DDA3937_RS06245	0.87	+0.5
1,400,089	-		DDA3937_RS06245	0.89	+1.9
1,400,089	-		DDA3937_RS06245	0.89	-1.3
1,400,188	-				+0.1
1,400,194	-				-1.0
1,400,204	+				-1.9
1,400,205	-				+0.7
1,400,205	-				-0.8
1,400,205	-				-2.1
1,400,205	-				+0.2
1,400,205	-				-1.0
1,400,219	+				-0.5
1,400,252	+				-0.4
1,400,253	-				-0.4
1,400,253	-				+0.1
1,400,293	-				-0.8
1,400,293	-				-2.4
1,400,296	+				-2.6
1,400,333	+				-0.2
1,400,423	+				+0.7
1,400,423	+				-0.9
1,400,435	+				+1.2
1,400,435	+				-0.6
1,400,435	+				-1.0
1,400,436	-				-0.3
1,400,436	-				-1.0
1,400,436	-				+0.5
1,400,439	+				+2.5
1,400,439	+				-0.2
1,400,439	+				+0.3
1,400,439	+				+0.3
1,400,439	+				-0.0
1,400,439	+				-1.4
1,400,440	-				-1.0
1,400,440	-				-3.0
1,400,440	-				-0.2
1,400,623	+		DDA3937_RS06250	0.14	+2.7
1,400,623	+		DDA3937_RS06250	0.14	+0.2
1,400,632	-		DDA3937_RS06250	0.15	-1.1
1,400,632	-		DDA3937_RS06250	0.15	-0.5
1,400,668	-		DDA3937_RS06250	0.17	-0.3
1,400,668	-		DDA3937_RS06250	0.17	-1.9
1,400,691	+		DDA3937_RS06250	0.19	-1.5
1,400,691	+		DDA3937_RS06250	0.19	-1.0
1,400,691	+		DDA3937_RS06250	0.19	-0.8
1,400,724	-		DDA3937_RS06250	0.21	-0.0
1,400,762	+		DDA3937_RS06250	0.24	+0.0
1,400,762	+		DDA3937_RS06250	0.24	-0.8
1,400,763	-		DDA3937_RS06250	0.24	-2.2
1,400,837	+		DDA3937_RS06250	0.29	+0.9
1,400,838	-		DDA3937_RS06250	0.29	-0.6
1,400,841	+		DDA3937_RS06250	0.29	-1.8
1,400,841	+		DDA3937_RS06250	0.29	+1.5
1,400,841	+		DDA3937_RS06250	0.29	-0.0
1,400,842	-		DDA3937_RS06250	0.29	-0.6
1,400,842	-		DDA3937_RS06250	0.29	-1.3
1,400,842	-		DDA3937_RS06250	0.29	+1.0
1,400,991	+		DDA3937_RS06250	0.40	-1.5
1,400,992	-		DDA3937_RS06250	0.40	-0.2
1,400,992	-		DDA3937_RS06250	0.40	-1.0
1,400,992	-		DDA3937_RS06250	0.40	+0.9
1,400,993	+		DDA3937_RS06250	0.40	+1.4
1,400,993	+		DDA3937_RS06250	0.40	+2.1
1,400,993	+		DDA3937_RS06250	0.40	+12.9
1,400,994	-		DDA3937_RS06250	0.40	-0.4
1,400,994	-		DDA3937_RS06250	0.40	-1.2
1,400,994	-		DDA3937_RS06250	0.40	-0.5
1,400,994	-		DDA3937_RS06250	0.40	+2.3
1,400,994	-		DDA3937_RS06250	0.40	-1.4
1,401,087	+		DDA3937_RS06250	0.46	-0.2
1,401,087	+		DDA3937_RS06250	0.46	+0.5
1,401,088	-		DDA3937_RS06250	0.47	+0.1
1,401,096	-		DDA3937_RS06250	0.47	-0.3
1,401,127	-		DDA3937_RS06250	0.49	-1.0
1,401,345	+		DDA3937_RS06250	0.65	-0.8
1,401,346	-				-0.0
1,401,347	+		DDA3937_RS06250	0.65	+0.4
1,401,347	+		DDA3937_RS06250	0.65	+0.6
1,401,347	+		DDA3937_RS06250	0.65	-1.2
1,401,347	+		DDA3937_RS06250	0.65	-1.5
1,401,347	+		DDA3937_RS06250	0.65	+0.8
1,401,347	+		DDA3937_RS06250	0.65	+3.4
1,401,347	+		DDA3937_RS06250	0.65	-2.8
1,401,347	+		DDA3937_RS06250	0.65	+1.0
1,401,348	-		DDA3937_RS06250	0.65	-0.5
1,401,348	-		DDA3937_RS06250	0.65	+2.2
1,401,348	-		DDA3937_RS06250	0.65	+0.4
1,401,348	-		DDA3937_RS06250	0.65	-0.4
1,401,348	-		DDA3937_RS06250	0.65	+1.0
1,401,352	+		DDA3937_RS06250	0.65	-0.6
1,401,352	+				-0.5
1,401,353	-		DDA3937_RS06250	0.65	-0.3
1,401,353	-		DDA3937_RS06250	0.65	+0.9
1,401,371	+		DDA3937_RS06250	0.66	+0.1
1,401,371	+		DDA3937_RS06250	0.66	-0.3
1,401,371	+		DDA3937_RS06250	0.66	-0.3
1,401,371	+		DDA3937_RS06250	0.66	-0.9
1,401,371	+				+0.2
1,401,371	+		DDA3937_RS06250	0.66	+0.4
1,401,371	+				-0.0
1,401,371	+		DDA3937_RS06250	0.66	-1.0
1,401,372	-		DDA3937_RS06250	0.66	-0.2
1,401,372	-		DDA3937_RS06250	0.66	-0.5
1,401,372	-		DDA3937_RS06250	0.66	-1.2
1,401,557	+		DDA3937_RS06250	0.79	+0.7
1,401,557	+		DDA3937_RS06250	0.79	-0.7
1,401,557	+		DDA3937_RS06250	0.79	-0.5
1,401,558	-		DDA3937_RS06250	0.80	-0.4
1,401,708	+				-0.5
1,401,709	-				+0.5
1,401,709	-				+0.8
1,401,765	+				-1.0
1,401,765	+				+0.7
1,401,765	+				-1.6
1,401,765	+				-0.3
1,401,766	-				+0.5
1,401,800	+				-0.9
1,401,801	-				+1.3
1,401,831	+				+0.2
1,401,831	+				-0.0
1,401,868	-				-1.5
1,401,890	+				-0.4
1,401,890	+				-0.0
1,401,891	-				-1.3
1,401,891	-				+0.4
1,401,891	-				+0.9
1,401,908	+				+0.5
1,401,908	+				-0.3
1,401,908	+				-1.5
1,401,909	-				-0.9
1,401,909	-				-1.5
1,401,909	-				-0.2
1,401,909	-				+0.5
1,401,923	-				-1.5
1,401,927	+				+0.3
1,401,962	+				+0.5
1,401,963	-				+5.7
1,402,003	+				+1.8
1,402,070	+				-0.6
1,402,070	+				-1.0
1,402,070	+				-0.5
1,402,070	+				-0.7
1,402,077	+				-0.5
1,402,077	+				-1.8
1,402,474	+		DDA3937_RS06255	0.35	-1.2