Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05725

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,277,447	+		DDA3937_RS05715	0.58	-0.1
1,277,448	-		DDA3937_RS05715	0.58	-0.8
1,277,448	-		DDA3937_RS05715	0.58	+0.1
1,277,448	-		DDA3937_RS05715	0.58	+1.0
1,277,448	-		DDA3937_RS05715	0.58	+2.0
1,277,449	+		DDA3937_RS05715	0.59	-0.9
1,277,449	+		DDA3937_RS05715	0.59	-1.2
1,277,449	+		DDA3937_RS05715	0.59	+0.3
1,277,449	+		DDA3937_RS05715	0.59	-0.3
1,277,450	-		DDA3937_RS05715	0.59	-1.6
1,277,450	-		DDA3937_RS05715	0.59	-0.4
1,277,450	-		DDA3937_RS05715	0.59	-0.1
1,277,450	-		DDA3937_RS05715	0.59	-3.3
1,277,450	-		DDA3937_RS05715	0.59	-0.6
1,277,456	+		DDA3937_RS05715	0.61	+1.0
1,277,456	+		DDA3937_RS05715	0.61	-1.2
1,277,456	+		DDA3937_RS05715	0.61	+0.4
1,277,457	-		DDA3937_RS05715	0.61	-0.8
1,277,505	+		DDA3937_RS05715	0.76	-0.5
1,277,505	+		DDA3937_RS05715	0.76	-0.4
1,277,509	+		DDA3937_RS05715	0.77	+0.3
1,277,509	+		DDA3937_RS05715	0.77	-1.8
1,277,509	+		DDA3937_RS05715	0.77	-1.0
1,277,509	+		DDA3937_RS05715	0.77	-0.6
1,277,509	+		DDA3937_RS05715	0.77	-1.6
1,277,509	+		DDA3937_RS05715	0.77	-0.8
1,277,517	+		DDA3937_RS05715	0.79	-0.0
1,277,517	+		DDA3937_RS05715	0.79	+0.2
1,277,518	-		DDA3937_RS05715	0.80	-1.2
1,277,540	-		DDA3937_RS05715	0.86	-0.8
1,277,597	+				-0.4
1,277,597	+				+1.2
1,277,597	+				+0.0
1,277,598	-				-2.2
1,277,636	+				-0.4
1,277,636	+				+0.0
1,277,637	-				+1.4
1,277,637	-				+0.7
1,277,860	+				+0.2
1,277,860	+				-0.6
1,277,860	+				-0.0
1,277,861	-				-0.6
1,277,880	-				-3.1
1,277,890	+				-2.4
1,277,890	+				+0.1
1,277,890	+				-3.6
1,277,890	+				-1.2
1,277,891	-				+0.1
1,277,891	-				-0.9
1,277,911	+				-1.0
1,277,912	-				-0.1
1,277,925	-				-1.5
1,277,964	+				+1.6
1,277,983	+				+1.6
1,277,984	-				-1.3
1,278,022	+				-0.1
1,278,022	+				-0.8
1,278,047	-				+1.9
1,278,061	-				+0.1
1,278,119	-				-0.2
1,278,122	+				-0.0
1,278,122	+				-0.2
1,278,313	-		DDA3937_RS05720	0.84	-1.2
1,278,346	-				-0.2
1,278,401	-				+0.2
1,278,515	+		DDA3937_RS05725	0.31	-2.8
1,278,518	-		DDA3937_RS05725	0.32	+2.4
1,278,518	-		DDA3937_RS05725	0.32	-0.9
1,278,584	-		DDA3937_RS05725	0.50	+1.9
1,278,584	-		DDA3937_RS05725	0.50	+0.2
1,278,606	-		DDA3937_RS05725	0.56	+0.2
1,278,625	-		DDA3937_RS05725	0.61	+0.8
1,278,681	+		DDA3937_RS05725	0.76	-1.2
1,278,681	+		DDA3937_RS05725	0.76	-1.3
1,278,682	-		DDA3937_RS05725	0.77	-1.0
1,278,693	-		DDA3937_RS05725	0.80	+2.9
1,278,737	+				-1.0
1,278,738	-				-0.0
1,278,742	+				+0.3
1,278,742	+				+0.2
1,278,743	-				-0.6
1,278,743	-				-1.2
1,278,743	-				+1.4
1,278,757	+				-1.4
1,278,757	+				-0.2
1,278,757	+				+1.4
1,278,758	-				+0.6
1,278,758	-				-0.5
1,278,758	-				-0.2
1,278,758	-				-0.3
1,278,772	-				+0.6
1,278,786	+				-0.8
1,278,786	+				+2.6
1,278,787	-				-0.8
1,278,794	-				+0.6
1,278,803	+				+0.2
1,278,803	+				-1.2
1,278,803	+				-0.0
1,278,850	+				-0.9
1,278,850	+				-1.0
1,278,851	-				+2.4
1,278,865	+				+0.2
1,278,883	-				-0.3
1,278,888	+				+2.4
1,278,985	-				+1.8
1,279,007	-				-2.4
1,279,014	+				+0.2
1,279,053	+				-1.6
1,279,053	+				+4.8
1,279,055	+				-1.3
1,279,056	-				+1.8
1,279,074	+				-0.9
1,279,074	+				+0.7
1,279,074	+				+1.6
1,279,074	+				+1.0
1,279,074	+				-0.3
1,279,074	+				-1.0
1,279,075	-				+0.4
1,279,118	+				-0.4
1,279,119	-				+0.1
1,279,269	+				-1.2
1,279,270	-				-0.9
1,279,276	+				-0.2
1,279,276	+				+0.2
1,279,277	-				-1.8
1,279,329	-		DDA3937_RS21985	0.38	-0.7
1,279,329	-		DDA3937_RS21985	0.38	+0.1
1,279,329	-		DDA3937_RS21985	0.38	-0.2
1,279,339	+		DDA3937_RS21985	0.44	-1.0
1,279,339	+		DDA3937_RS21985	0.44	+2.1
1,279,339	+		DDA3937_RS21985	0.44	-0.6
1,279,339	+		DDA3937_RS21985	0.44	-1.9
1,279,339	+		DDA3937_RS21985	0.44	-2.1
1,279,340	-		DDA3937_RS21985	0.45	-0.7
1,279,340	-		DDA3937_RS21985	0.45	+0.6
1,279,340	-		DDA3937_RS21985	0.45	-2.0
1,279,340	-		DDA3937_RS21985	0.45	+0.3
1,279,340	-		DDA3937_RS21985	0.45	-0.1
1,279,340	-		DDA3937_RS21985	0.45	+0.3
1,279,368	-		DDA3937_RS21985	0.65	-0.2
1,279,368	-		DDA3937_RS21985	0.65	+0.7
1,279,368	-		DDA3937_RS21985	0.65	-0.4
1,279,368	-		DDA3937_RS21985	0.65	+0.1
1,279,407	+				-0.2
1,279,407	+				-0.8
1,279,407	+				-0.9
1,279,407	+				-1.4
1,279,408	-				-0.9
1,279,408	-				-0.7
1,279,408	-				-0.2
1,279,410	+				+0.6
1,279,410	+				-0.1
1,279,423	-				+1.1
1,279,423	-				-2.1
1,279,436	-				-0.0
1,279,517	-		DDA3937_RS05730	0.33	-0.1
1,279,517	-		DDA3937_RS05730	0.33	+2.6
1,279,519	+		DDA3937_RS05730	0.34	+0.1
1,279,519	+		DDA3937_RS05730	0.34	-0.8
1,279,520	-		DDA3937_RS05730	0.34	-0.8
1,279,520	-		DDA3937_RS05730	0.34	-0.8
1,279,520	-		DDA3937_RS05730	0.34	+1.2
1,279,520	-		DDA3937_RS05730	0.34	-1.2
1,279,555	+		DDA3937_RS05730	0.48	-2.2
1,279,555	+		DDA3937_RS05730	0.48	-0.9
1,279,555	+		DDA3937_RS05730	0.48	+0.0
1,279,555	+		DDA3937_RS05730	0.48	-1.0
1,279,555	+		DDA3937_RS05730	0.48	-0.6
1,279,555	+		DDA3937_RS05730	0.48	+1.6
1,279,555	+		DDA3937_RS05730	0.48	-0.5
1,279,556	-		DDA3937_RS05730	0.48	+0.5
1,279,556	-		DDA3937_RS05730	0.48	-1.8
1,279,556	-		DDA3937_RS05730	0.48	-0.8
1,279,556	-		DDA3937_RS05730	0.48	-1.0
1,279,561	+		DDA3937_RS05730	0.50	-0.1
1,279,562	-		DDA3937_RS05730	0.51	-2.3
1,279,582	+		DDA3937_RS05730	0.59	-0.4
1,279,582	+		DDA3937_RS05730	0.59	-0.9
1,279,582	+		DDA3937_RS05730	0.59	+0.7
1,279,582	+		DDA3937_RS05730	0.59	-0.0
1,279,583	-		DDA3937_RS05730	0.59	+0.9
1,279,583	-		DDA3937_RS05730	0.59	-0.4
1,279,583	-		DDA3937_RS05730	0.59	-1.9
1,279,583	-		DDA3937_RS05730	0.59	+0.7
1,279,617	-		DDA3937_RS05730	0.73	-1.1
1,279,618	+		DDA3937_RS05730	0.73	-1.3
1,279,623	+		DDA3937_RS05730	0.75	+2.2
1,279,624	-		DDA3937_RS05730	0.75	+0.8
1,279,624	-		DDA3937_RS05730	0.75	-0.7
1,279,661	-				-0.2
1,279,661	-				-0.3
1,279,713	-				+1.1
1,279,752	-				+0.0
1,279,759	-				-0.8