Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05445

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,216,220	+		DDA3937_RS05440	0.49	-0.9
1,216,221	-		DDA3937_RS05440	0.49	+0.3
1,216,268	+		DDA3937_RS05440	0.53	+0.3
1,216,268	+		DDA3937_RS05440	0.53	-1.3
1,216,268	+		DDA3937_RS05440	0.53	-2.1
1,216,269	-		DDA3937_RS05440	0.53	+0.7
1,216,269	-		DDA3937_RS05440	0.53	-1.4
1,216,269	-		DDA3937_RS05440	0.53	-0.4
1,216,269	-		DDA3937_RS05440	0.53	-0.5
1,216,325	+		DDA3937_RS05440	0.58	-1.6
1,216,340	+		DDA3937_RS05440	0.59	+0.7
1,216,340	+		DDA3937_RS05440	0.59	-0.9
1,216,340	+		DDA3937_RS05440	0.59	-0.8
1,216,340	+		DDA3937_RS05440	0.59	-1.3
1,216,340	+		DDA3937_RS05440	0.59	-0.3
1,216,341	-		DDA3937_RS05440	0.59	-0.6
1,216,341	-				+1.0
1,216,509	-		DDA3937_RS05440	0.75	-0.4
1,216,589	-		DDA3937_RS05440	0.82	+0.0
1,216,655	+		DDA3937_RS05440	0.88	+2.3
1,216,655	+		DDA3937_RS05440	0.88	-1.4
1,216,655	+		DDA3937_RS05440	0.88	-0.1
1,216,655	+		DDA3937_RS05440	0.88	+0.0
1,216,656	-		DDA3937_RS05440	0.88	-1.3
1,216,656	-		DDA3937_RS05440	0.88	+1.0
1,216,656	-		DDA3937_RS05440	0.88	-0.0
1,216,656	-		DDA3937_RS05440	0.88	-0.5
1,216,656	-		DDA3937_RS05440	0.88	+0.1
1,216,656	-		DDA3937_RS05440	0.88	-1.1
1,216,656	-		DDA3937_RS05440	0.88	-0.3
1,216,657	+		DDA3937_RS05440	0.88	-1.3
1,216,657	+		DDA3937_RS05440	0.88	-0.1
1,216,657	+		DDA3937_RS05440	0.88	+0.6
1,216,657	+		DDA3937_RS05440	0.88	-1.1
1,216,658	-		DDA3937_RS05440	0.88	+0.3
1,216,658	-		DDA3937_RS05440	0.88	+0.3
1,216,658	-		DDA3937_RS05440	0.88	-0.4
1,216,658	-		DDA3937_RS05440	0.88	-1.1
1,216,658	-		DDA3937_RS05440	0.88	-1.0
1,216,658	-		DDA3937_RS05440	0.88	-1.4
1,216,658	-		DDA3937_RS05440	0.88	-0.1
1,216,680	+				+0.4
1,216,680	+				+0.8
1,216,681	-				-1.7
1,216,681	-				+0.4
1,216,681	-				+3.0
1,216,681	-				-0.1
1,216,681	-				-0.8
1,216,681	-				-1.3
1,216,705	+				-0.2
1,216,705	+				-1.0
1,216,811	-				+0.0
1,216,811	-				-0.7
1,216,811	-				+0.9
1,216,837	-				-1.1
1,216,859	-				+1.6
1,216,872	-				+2.2
1,216,877	+				+0.0
1,216,878	-				-1.0
1,216,882	-				-0.1
1,216,948	+				+0.2
1,216,948	+				-0.1
1,216,948	+				-0.7
1,216,948	+				-1.1
1,216,948	+				+0.6
1,216,949	-				-0.4
1,216,949	-				-2.3
1,216,949	-				+0.2
1,216,949	-				-1.8
1,216,949	-				-0.7
1,216,949	-				+0.4
1,216,949	-				-2.0
1,216,951	-				-0.1
1,216,969	+				-1.0
1,217,006	-				-1.3
1,217,039	+				+2.6
1,217,100	-				+0.3
1,217,100	-				-1.4
1,217,194	+				+1.2
1,217,194	+				-0.4
1,217,194	+				-1.1
1,217,194	+				+0.3
1,217,194	+				+0.8
1,217,194	+				+0.3
1,217,194	+				-0.2
1,217,194	+				+0.7
1,217,194	+				+2.2
1,217,194	+				-0.8
1,217,194	+				-0.4
1,217,194	+				+0.6
1,217,194	+				-1.2
1,217,194	+				-0.2
1,217,195	-				+0.2
1,217,195	-				+0.3
1,217,195	-				-1.2
1,217,195	-				-1.6
1,217,195	-				+0.0
1,217,195	-				-2.7
1,217,195	-				-1.4
1,217,195	-				-1.0
1,217,195	-				-1.4
1,217,195	-				-0.5
1,217,195	-				+0.1
1,217,195	-				-2.0
1,217,195	-				-0.5
1,217,195	-				+0.7
1,217,195	-				-0.8
1,217,195	-				-0.6
1,217,195	-				-1.7
1,217,195	-				+1.0
1,217,195	-				-0.3
1,217,195	-				-0.2
1,217,195	-				-1.1
1,217,198	+				-0.7
1,217,198	+				-0.2
1,217,198	+				-0.4
1,217,198	+				+1.3
1,217,198	+				-0.6
1,217,198	+				-0.2
1,217,198	+				-0.5
1,217,198	+				+0.1
1,217,198	+				-1.1
1,217,198	+				+0.0
1,217,198	+				-0.7
1,217,198	+				-0.7
1,217,198	+				-0.2
1,217,198	+				-0.5
1,217,198	+				+0.4
1,217,198	+				+1.6
1,217,198	+				-0.9
1,217,198	+				-2.9
1,217,198	+				+0.7
1,217,199	-				-0.1
1,217,199	-				-0.1
1,217,199	-				+2.2
1,217,199	-				-0.7
1,217,199	-				+0.2
1,217,199	-				-1.4
1,217,199	-				+0.1
1,217,199	-				-0.2
1,217,199	-				-1.3
1,217,199	-				+1.6
1,217,199	-				-0.1
1,217,199	-				+1.4
1,217,199	-				+1.6
1,217,199	-				-0.2
1,217,199	-				-0.8
1,217,199	-				+0.3
1,217,199	-				+0.6
1,217,212	+				-0.2
1,217,258	-				-0.6
1,217,280	-				-0.8
1,217,466	+		DDA3937_RS05445	0.20	+0.8
1,217,467	-				+0.6
1,217,467	-		DDA3937_RS05445	0.20	-2.2
1,217,467	-		DDA3937_RS05445	0.20	+0.8
1,217,571	+		DDA3937_RS05445	0.28	-1.2
1,217,571	+		DDA3937_RS05445	0.28	+1.6
1,217,572	-		DDA3937_RS05445	0.28	+1.4
1,217,572	-		DDA3937_RS05445	0.28	-0.0
1,217,573	+		DDA3937_RS05445	0.28	-1.7
1,217,573	+		DDA3937_RS05445	0.28	-0.3
1,217,573	+		DDA3937_RS05445	0.28	-1.1
1,217,583	+		DDA3937_RS05445	0.29	-0.6
1,217,583	+		DDA3937_RS05445	0.29	+0.2
1,217,584	-				-0.4
1,217,584	-		DDA3937_RS05445	0.29	+0.3
1,217,613	+		DDA3937_RS05445	0.31	+0.0
1,217,645	+		DDA3937_RS05445	0.34	+0.5
1,217,740	-		DDA3937_RS05445	0.41	-0.8
1,217,925	+		DDA3937_RS05445	0.55	+0.4
1,217,926	-		DDA3937_RS05445	0.55	-1.8
1,217,926	-				-0.4
1,218,006	+		DDA3937_RS05445	0.61	-0.6
1,218,006	+		DDA3937_RS05445	0.61	-0.3
1,218,006	+		DDA3937_RS05445	0.61	+0.5
1,218,006	+		DDA3937_RS05445	0.61	-1.4
1,218,006	+		DDA3937_RS05445	0.61	-2.8
1,218,007	-		DDA3937_RS05445	0.61	+0.0
1,218,007	-		DDA3937_RS05445	0.61	-1.0
1,218,007	-		DDA3937_RS05445	0.61	+0.5
1,218,007	-		DDA3937_RS05445	0.61	-1.2
1,218,015	+		DDA3937_RS05445	0.62	-0.3
1,218,015	+		DDA3937_RS05445	0.62	-0.8
1,218,016	-		DDA3937_RS05445	0.62	-0.8
1,218,016	-		DDA3937_RS05445	0.62	+0.1
1,218,016	-		DDA3937_RS05445	0.62	+0.3
1,218,016	-		DDA3937_RS05445	0.62	-0.5
1,218,038	+		DDA3937_RS05445	0.64	+0.1
1,218,039	-		DDA3937_RS05445	0.64	-1.3
1,218,039	-		DDA3937_RS05445	0.64	-0.7
1,218,039	-		DDA3937_RS05445	0.64	+0.6
1,218,071	+		DDA3937_RS05445	0.66	-0.2
1,218,072	-		DDA3937_RS05445	0.66	-0.3
1,218,072	-		DDA3937_RS05445	0.66	+0.6
1,218,123	+		DDA3937_RS05445	0.70	-0.9
1,218,123	+		DDA3937_RS05445	0.70	+0.2
1,218,124	-		DDA3937_RS05445	0.70	+0.3
1,218,138	+		DDA3937_RS05445	0.71	+0.6
1,218,139	-		DDA3937_RS05445	0.71	-3.4
1,218,139	-		DDA3937_RS05445	0.71	-2.2
1,218,174	-		DDA3937_RS05445	0.74	+1.3
1,218,174	-		DDA3937_RS05445	0.74	+0.0
1,218,474	+				+1.6
1,218,474	+				-1.4
1,218,474	+				-2.1
1,218,474	+				-1.4
1,218,474	+				+0.5
1,218,474	+				+1.9
1,218,474	+				-0.4
1,218,475	-				+0.8
1,218,595	+				+0.6
1,218,595	+				-1.5
1,218,596	-				-0.6
1,218,617	-				+2.0
1,218,638	-				-1.9
1,218,653	-				+1.2
1,218,707	+				-1.4
1,218,707	+				+0.0
1,218,708	-				-1.2
1,218,708	-				+1.4
1,218,708	-				-1.2
1,218,758	+		DDA3937_RS05450	0.10	-1.2
1,218,782	+		DDA3937_RS05450	0.12	+0.5
1,218,782	+		DDA3937_RS05450	0.12	-0.2
1,218,784	+		DDA3937_RS05450	0.12	+1.3
1,218,784	+		DDA3937_RS05450	0.12	-0.6
1,218,784	+		DDA3937_RS05450	0.12	+0.2
1,218,784	+		DDA3937_RS05450	0.12	+0.0
1,218,784	+		DDA3937_RS05450	0.12	-1.9
1,218,784	+		DDA3937_RS05450	0.12	-1.7
1,218,785	-		DDA3937_RS05450	0.12	-0.5
1,218,785	-		DDA3937_RS05450	0.12	+0.4
1,218,785	-		DDA3937_RS05450	0.12	-0.6
1,218,785	-		DDA3937_RS05450	0.12	-0.8
1,218,785	-		DDA3937_RS05450	0.12	-1.8
1,218,785	-		DDA3937_RS05450	0.12	-0.9
1,218,790	+		DDA3937_RS05450	0.13	-0.2
1,218,861	-		DDA3937_RS05450	0.18	+0.0
1,218,881	+		DDA3937_RS05450	0.20	+0.6
1,218,882	-		DDA3937_RS05450	0.20	-1.9
1,218,899	+		DDA3937_RS05450	0.21	-1.4
1,218,899	+		DDA3937_RS05450	0.21	+1.6
1,218,900	-		DDA3937_RS05450	0.21	-0.7
1,218,900	-		DDA3937_RS05450	0.21	+0.1
1,218,953	+		DDA3937_RS05450	0.25	-1.9
1,218,953	+		DDA3937_RS05450	0.25	-1.8
1,218,953	+		DDA3937_RS05450	0.25	+0.3
1,218,953	+		DDA3937_RS05450	0.25	-2.2
1,218,953	+		DDA3937_RS05450	0.25	+1.1
1,218,953	+		DDA3937_RS05450	0.25	-1.0
1,218,954	-		DDA3937_RS05450	0.25	+0.6
1,218,954	-		DDA3937_RS05450	0.25	-2.2
1,218,954	-		DDA3937_RS05450	0.25	-2.1
1,218,954	-		DDA3937_RS05450	0.25	-0.5
1,218,954	-		DDA3937_RS05450	0.25	+1.6
1,218,954	-		DDA3937_RS05450	0.25	-0.7
1,218,954	-		DDA3937_RS05450	0.25	-0.8
1,218,954	-		DDA3937_RS05450	0.25	-1.5
1,218,954	-		DDA3937_RS05450	0.25	-0.9
1,218,954	-		DDA3937_RS05450	0.25	-1.1
1,218,954	-		DDA3937_RS05450	0.25	+1.6
1,218,955	+		DDA3937_RS05450	0.25	-0.2
1,218,955	+		DDA3937_RS05450	0.25	-1.4
1,218,955	+		DDA3937_RS05450	0.25	+0.4
1,218,956	-		DDA3937_RS05450	0.25	-2.2
1,218,956	-		DDA3937_RS05450	0.25	-1.6
1,218,963	+		DDA3937_RS05450	0.26	-0.2
1,218,963	+		DDA3937_RS05450	0.26	-0.1
1,218,964	-		DDA3937_RS05450	0.26	-0.7
1,219,047	+		DDA3937_RS05450	0.32	+0.2
1,219,048	-		DDA3937_RS05450	0.32	-3.2
1,219,171	+		DDA3937_RS05450	0.41	-1.0
1,219,171	+		DDA3937_RS05450	0.41	-1.9
1,219,172	-		DDA3937_RS05450	0.41	+2.4
1,219,172	-		DDA3937_RS05450	0.41	-1.3
1,219,172	-		DDA3937_RS05450	0.41	-0.2
1,219,172	-		DDA3937_RS05450	0.41	+1.6
1,219,291	+		DDA3937_RS05450	0.50	+1.3
1,219,292	-		DDA3937_RS05450	0.50	+1.6
1,219,342	+		DDA3937_RS05450	0.54	-1.4
1,219,342	+		DDA3937_RS05450	0.54	+1.6
1,219,355	+		DDA3937_RS05450	0.55	-0.1
1,219,355	+		DDA3937_RS05450	0.55	-0.7
1,219,355	+		DDA3937_RS05450	0.55	+0.9
1,219,355	+		DDA3937_RS05450	0.55	-0.2
1,219,355	+		DDA3937_RS05450	0.55	+0.4
1,219,355	+		DDA3937_RS05450	0.55	-0.8
1,219,356	-		DDA3937_RS05450	0.55	+1.0
1,219,356	-		DDA3937_RS05450	0.55	+0.3
1,219,356	-		DDA3937_RS05450	0.55	+0.7
1,219,356	-		DDA3937_RS05450	0.55	-0.7
1,219,411	+		DDA3937_RS05450	0.59	-0.8
1,219,412	-		DDA3937_RS05450	0.59	+0.1
1,219,444	+		DDA3937_RS05450	0.61	-0.2
1,219,444	+				-0.4
1,219,444	+		DDA3937_RS05450	0.61	-3.1
1,219,444	+		DDA3937_RS05450	0.61	-0.4