Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04200

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04195 and DDA3937_RS04200 are separated by 54 nucleotidesDDA3937_RS04200 and DDA3937_RS04205 are separated by 3 nucleotidesDDA3937_RS04205 and DDA3937_RS04210 are separated by 96 nucleotides DDA3937_RS04195: DDA3937_RS04195 - GPO family capsid scaffolding protein, at 929,523 to 930,359 _RS04195 DDA3937_RS04200: DDA3937_RS04200 - phage major capsid protein, P2 family, at 930,414 to 931,445 _RS04200 DDA3937_RS04205: DDA3937_RS04205 - terminase, at 931,449 to 932,150 _RS04205 DDA3937_RS04210: DDA3937_RS04210 - head completion/stabilization protein, at 932,247 to 932,699 _RS04210 Position (kb) 930 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 929.580 kb on - strandat 929.626 kb on - strand, within DDA3937_RS04195at 929.704 kb on + strand, within DDA3937_RS04195at 929.752 kb on + strand, within DDA3937_RS04195at 929.753 kb on - strand, within DDA3937_RS04195at 929.770 kb on + strand, within DDA3937_RS04195at 929.770 kb on + strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.771 kb on - strand, within DDA3937_RS04195at 929.774 kb on - strand, within DDA3937_RS04195at 929.818 kb on + strand, within DDA3937_RS04195at 929.856 kb on + strand, within DDA3937_RS04195at 929.942 kb on - strand, within DDA3937_RS04195at 929.954 kb on - strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.996 kb on + strand, within DDA3937_RS04195at 929.997 kb on - strand, within DDA3937_RS04195at 929.997 kb on - strand, within DDA3937_RS04195at 930.009 kb on - strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.071 kb on + strand, within DDA3937_RS04195at 930.211 kb on + strand, within DDA3937_RS04195at 930.212 kb on - strand, within DDA3937_RS04195at 930.300 kb on - strandat 930.300 kb on - strandat 930.303 kb on - strandat 930.333 kb on - strandat 930.368 kb on - strandat 930.378 kb on - strandat 930.413 kb on + strandat 930.422 kb on - strandat 930.453 kb on + strandat 930.453 kb on + strandat 930.478 kb on - strandat 930.502 kb on - strandat 930.668 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.699 kb on + strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.700 kb on - strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.701 kb on + strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.702 kb on - strand, within DDA3937_RS04200at 930.797 kb on - strand, within DDA3937_RS04200at 930.831 kb on - strand, within DDA3937_RS04200at 931.053 kb on + strand, within DDA3937_RS04200at 931.256 kb on + strand, within DDA3937_RS04200at 931.256 kb on + strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.257 kb on - strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.260 kb on + strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.261 kb on - strand, within DDA3937_RS04200at 931.329 kb on + strand, within DDA3937_RS04200at 931.329 kb on + strand, within DDA3937_RS04200at 931.330 kb on - strandat 931.347 kb on + strandat 931.359 kb on + strandat 931.371 kb on + strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.421 kb on + strandat 931.475 kb on + strandat 931.504 kb on + strandat 931.505 kb on - strandat 931.613 kb on - strand, within DDA3937_RS04205at 931.613 kb on - strand, within DDA3937_RS04205at 931.658 kb on - strand, within DDA3937_RS04205at 931.687 kb on - strand, within DDA3937_RS04205at 931.767 kb on - strand, within DDA3937_RS04205at 931.767 kb on - strand, within DDA3937_RS04205at 931.907 kb on + strand, within DDA3937_RS04205at 931.953 kb on - strand, within DDA3937_RS04205at 931.979 kb on - strand, within DDA3937_RS04205at 932.060 kb on - strand, within DDA3937_RS04205at 932.060 kb on - strand, within DDA3937_RS04205at 932.095 kb on + strandat 932.149 kb on - strandat 932.149 kb on - strandat 932.157 kb on - strandat 932.271 kb on + strandat 932.387 kb on - strand, within DDA3937_RS04210

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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929,580 - -0.9
929,626 - DDA3937_RS04195 0.12 -0.8
929,704 + DDA3937_RS04195 0.22 -0.3
929,752 + DDA3937_RS04195 0.27 -1.3
929,753 - DDA3937_RS04195 0.27 +1.1
929,770 + DDA3937_RS04195 0.30 -2.1
929,770 + DDA3937_RS04195 0.30 +0.3
929,771 - DDA3937_RS04195 0.30 +0.9
929,771 - DDA3937_RS04195 0.30 -0.2
929,771 - DDA3937_RS04195 0.30 -0.7
929,774 - DDA3937_RS04195 0.30 -1.6
929,818 + DDA3937_RS04195 0.35 -2.9
929,856 + DDA3937_RS04195 0.40 -2.4
929,942 - DDA3937_RS04195 0.50 +0.3
929,954 - DDA3937_RS04195 0.51 -1.3
929,996 + DDA3937_RS04195 0.57 -0.3
929,996 + DDA3937_RS04195 0.57 -1.0
929,996 + DDA3937_RS04195 0.57 -1.9
929,997 - DDA3937_RS04195 0.57 +1.3
929,997 - DDA3937_RS04195 0.57 -1.1
930,009 - DDA3937_RS04195 0.58 -0.8
930,071 + DDA3937_RS04195 0.65 +2.5
930,071 + DDA3937_RS04195 0.65 -0.3
930,071 + DDA3937_RS04195 0.65 -0.9
930,211 + DDA3937_RS04195 0.82 -2.2
930,212 - DDA3937_RS04195 0.82 +0.3
930,300 - +3.0
930,300 - -1.2
930,303 - -0.0
930,333 - +0.6
930,368 - -0.0
930,378 - -0.2
930,413 + -0.7
930,422 - -0.7
930,453 + -0.3
930,453 + +0.2
930,478 - -1.0
930,502 - -0.9
930,668 + DDA3937_RS04200 0.25 +0.3
930,699 + DDA3937_RS04200 0.28 -3.2
930,699 + DDA3937_RS04200 0.28 -1.3
930,699 + DDA3937_RS04200 0.28 -2.2
930,699 + DDA3937_RS04200 0.28 -0.2
930,699 + DDA3937_RS04200 0.28 -0.9
930,700 - DDA3937_RS04200 0.28 +0.1
930,700 - DDA3937_RS04200 0.28 -1.2
930,700 - DDA3937_RS04200 0.28 -0.6
930,701 + DDA3937_RS04200 0.28 +0.2
930,701 + DDA3937_RS04200 0.28 -0.4
930,701 + DDA3937_RS04200 0.28 -0.9
930,701 + DDA3937_RS04200 0.28 -2.7
930,702 - DDA3937_RS04200 0.28 -2.0
930,702 - DDA3937_RS04200 0.28 -0.6
930,702 - DDA3937_RS04200 0.28 -0.2
930,702 - DDA3937_RS04200 0.28 -0.0
930,797 - DDA3937_RS04200 0.37 +0.3
930,831 - DDA3937_RS04200 0.40 -1.8
931,053 + DDA3937_RS04200 0.62 -0.1
931,256 + DDA3937_RS04200 0.82 -0.0
931,256 + DDA3937_RS04200 0.82 -2.0
931,257 - DDA3937_RS04200 0.82 -1.5
931,257 - DDA3937_RS04200 0.82 +0.9
931,257 - DDA3937_RS04200 0.82 -2.5
931,257 - DDA3937_RS04200 0.82 +0.5
931,257 - DDA3937_RS04200 0.82 +1.1
931,257 - DDA3937_RS04200 0.82 -0.2
931,257 - DDA3937_RS04200 0.82 -0.8
931,257 - DDA3937_RS04200 0.82 -0.9
931,257 - DDA3937_RS04200 0.82 +0.6
931,257 - DDA3937_RS04200 0.82 -0.7
931,257 - DDA3937_RS04200 0.82 -0.5
931,257 - DDA3937_RS04200 0.82 -0.0
931,260 + DDA3937_RS04200 0.82 -1.5
931,260 + DDA3937_RS04200 0.82 -0.7
931,260 + DDA3937_RS04200 0.82 -1.3
931,261 - DDA3937_RS04200 0.82 -0.7
931,261 - DDA3937_RS04200 0.82 +1.2
931,261 - DDA3937_RS04200 0.82 -0.0
931,261 - DDA3937_RS04200 0.82 -0.9
931,261 - DDA3937_RS04200 0.82 +0.3
931,261 - DDA3937_RS04200 0.82 +0.1
931,261 - DDA3937_RS04200 0.82 -1.6
931,329 + DDA3937_RS04200 0.89 -2.6
931,329 + DDA3937_RS04200 0.89 -1.8
931,330 - +0.1
931,347 + +0.5
931,359 + -0.7
931,371 + -1.8
931,372 - -2.3
931,372 - -2.1
931,372 - -1.8
931,372 - +0.4
931,421 + -0.1
931,475 + -0.9
931,504 + -2.9
931,505 - -1.5
931,613 - DDA3937_RS04205 0.23 +0.7
931,613 - DDA3937_RS04205 0.23 -0.3
931,658 - DDA3937_RS04205 0.30 +0.3
931,687 - DDA3937_RS04205 0.34 -1.1
931,767 - DDA3937_RS04205 0.45 -2.1
931,767 - DDA3937_RS04205 0.45 -1.5
931,907 + DDA3937_RS04205 0.65 -1.1
931,953 - DDA3937_RS04205 0.72 +1.4
931,979 - DDA3937_RS04205 0.75 +0.3
932,060 - DDA3937_RS04205 0.87 -1.8
932,060 - DDA3937_RS04205 0.87 -0.9
932,095 + +0.3
932,149 - +1.8
932,149 - -1.2
932,157 - +5.7
932,271 + -1.1
932,387 - DDA3937_RS04210 0.31 +1.2

Or see this region's nucleotide sequence