Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04015

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04010 and DDA3937_RS04015 overlap by 1 nucleotidesDDA3937_RS04015 and DDA3937_RS04020 overlap by 1 nucleotides DDA3937_RS04010: DDA3937_RS04010 - conjugal transfer protein TrbE, at 894,154 to 896,604 _RS04010 DDA3937_RS04015: DDA3937_RS04015 - P-type conjugative transfer protein TrbJ, at 896,604 to 897,335 _RS04015 DDA3937_RS04020: DDA3937_RS04020 - P-type conjugative transfer protein TrbL, at 897,335 to 898,498 _RS04020 Position (kb) 896 897 898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 895.633 kb on + strand, within DDA3937_RS04010at 895.633 kb on + strand, within DDA3937_RS04010at 895.634 kb on - strand, within DDA3937_RS04010at 895.634 kb on - strand, within DDA3937_RS04010at 895.634 kb on - strand, within DDA3937_RS04010at 895.634 kb on - strand, within DDA3937_RS04010at 895.634 kb on - strand, within DDA3937_RS04010at 895.824 kb on + strand, within DDA3937_RS04010at 895.886 kb on - strand, within DDA3937_RS04010at 895.886 kb on - strand, within DDA3937_RS04010at 895.886 kb on - strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strandat 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.287 kb on + strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strandat 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.288 kb on - strand, within DDA3937_RS04010at 896.318 kb on + strand, within DDA3937_RS04010at 896.318 kb on + strand, within DDA3937_RS04010at 896.324 kb on + strand, within DDA3937_RS04010at 896.325 kb on - strand, within DDA3937_RS04010at 896.353 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.356 kb on + strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.357 kb on - strand, within DDA3937_RS04010at 896.359 kb on + strand, within DDA3937_RS04010at 896.360 kb on - strandat 896.360 kb on - strandat 896.456 kb on + strandat 896.456 kb on + strandat 896.457 kb on - strandat 896.553 kb on + strandat 896.671 kb on + strandat 896.671 kb on + strandat 896.688 kb on + strand, within DDA3937_RS04015at 896.688 kb on + strand, within DDA3937_RS04015at 896.689 kb on - strand, within DDA3937_RS04015at 896.689 kb on - strand, within DDA3937_RS04015at 896.699 kb on + strand, within DDA3937_RS04015at 896.699 kb on + strand, within DDA3937_RS04015at 896.700 kb on - strand, within DDA3937_RS04015at 896.700 kb on - strand, within DDA3937_RS04015at 896.779 kb on - strand, within DDA3937_RS04015at 896.798 kb on + strand, within DDA3937_RS04015at 896.799 kb on - strand, within DDA3937_RS04015at 896.883 kb on + strand, within DDA3937_RS04015at 896.884 kb on - strand, within DDA3937_RS04015at 896.923 kb on - strand, within DDA3937_RS04015at 896.934 kb on + strand, within DDA3937_RS04015at 896.935 kb on - strand, within DDA3937_RS04015at 896.935 kb on - strand, within DDA3937_RS04015at 896.964 kb on + strand, within DDA3937_RS04015at 896.964 kb on + strand, within DDA3937_RS04015at 896.965 kb on - strand, within DDA3937_RS04015at 896.965 kb on - strand, within DDA3937_RS04015at 897.289 kb on - strandat 897.289 kb on - strandat 897.312 kb on + strandat 897.313 kb on - strandat 897.383 kb on + strandat 897.383 kb on + strandat 897.473 kb on + strand, within DDA3937_RS04020at 897.473 kb on + strand, within DDA3937_RS04020at 897.473 kb on + strand, within DDA3937_RS04020at 897.474 kb on - strand, within DDA3937_RS04020at 897.474 kb on - strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.542 kb on + strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.543 kb on - strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.560 kb on + strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.561 kb on - strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.564 kb on + strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.565 kb on - strand, within DDA3937_RS04020at 897.595 kb on - strand, within DDA3937_RS04020at 897.597 kb on + strand, within DDA3937_RS04020at 897.598 kb on - strand, within DDA3937_RS04020at 897.682 kb on + strand, within DDA3937_RS04020at 897.691 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.693 kb on + strand, within DDA3937_RS04020at 897.694 kb on - strand, within DDA3937_RS04020at 897.694 kb on - strand, within DDA3937_RS04020at 897.697 kb on + strand, within DDA3937_RS04020at 897.698 kb on - strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.760 kb on + strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.761 kb on - strand, within DDA3937_RS04020at 897.804 kb on + strand, within DDA3937_RS04020at 897.828 kb on + strand, within DDA3937_RS04020at 897.829 kb on - strand, within DDA3937_RS04020at 897.972 kb on + strand, within DDA3937_RS04020at 897.973 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.183 kb on - strand, within DDA3937_RS04020at 898.228 kb on + strand, within DDA3937_RS04020at 898.229 kb on - strand, within DDA3937_RS04020at 898.288 kb on + strand, within DDA3937_RS04020at 898.289 kb on - strand, within DDA3937_RS04020

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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895,633 + DDA3937_RS04010 0.60 -0.4
895,633 + DDA3937_RS04010 0.60 +0.4
895,634 - DDA3937_RS04010 0.60 -0.5
895,634 - DDA3937_RS04010 0.60 -0.8
895,634 - DDA3937_RS04010 0.60 -2.1
895,634 - DDA3937_RS04010 0.60 -2.0
895,634 - DDA3937_RS04010 0.60 -0.8
895,824 + DDA3937_RS04010 0.68 -4.2
895,886 - DDA3937_RS04010 0.71 +0.1
895,886 - DDA3937_RS04010 0.71 -0.9
895,886 - DDA3937_RS04010 0.71 -0.6
896,287 + DDA3937_RS04010 0.87 -0.2
896,287 + DDA3937_RS04010 0.87 +0.7
896,287 + DDA3937_RS04010 0.87 -0.0
896,287 + DDA3937_RS04010 0.87 +1.5
896,287 + +0.7
896,287 + DDA3937_RS04010 0.87 +1.4
896,287 + DDA3937_RS04010 0.87 +0.4
896,287 + DDA3937_RS04010 0.87 -0.0
896,287 + DDA3937_RS04010 0.87 +1.2
896,287 + DDA3937_RS04010 0.87 +0.2
896,287 + DDA3937_RS04010 0.87 +1.4
896,287 + DDA3937_RS04010 0.87 -0.8
896,287 + DDA3937_RS04010 0.87 -1.8
896,288 - DDA3937_RS04010 0.87 -0.3
896,288 - DDA3937_RS04010 0.87 -1.9
896,288 - DDA3937_RS04010 0.87 -0.8
896,288 - DDA3937_RS04010 0.87 +0.1
896,288 - DDA3937_RS04010 0.87 -1.5
896,288 - DDA3937_RS04010 0.87 +0.1
896,288 - DDA3937_RS04010 0.87 +3.3
896,288 - DDA3937_RS04010 0.87 -0.2
896,288 - DDA3937_RS04010 0.87 -0.3
896,288 - DDA3937_RS04010 0.87 +1.0
896,288 - DDA3937_RS04010 0.87 -0.1
896,288 - DDA3937_RS04010 0.87 -0.5
896,288 - DDA3937_RS04010 0.87 -0.4
896,288 - DDA3937_RS04010 0.87 -3.1
896,288 - +0.7
896,288 - DDA3937_RS04010 0.87 -0.6
896,288 - DDA3937_RS04010 0.87 -1.1
896,288 - DDA3937_RS04010 0.87 +2.3
896,318 + DDA3937_RS04010 0.88 -0.7
896,318 + DDA3937_RS04010 0.88 +0.5
896,324 + DDA3937_RS04010 0.89 +1.9
896,325 - DDA3937_RS04010 0.89 -0.5
896,353 + DDA3937_RS04010 0.90 -0.6
896,356 + DDA3937_RS04010 0.90 -0.2
896,356 + DDA3937_RS04010 0.90 -0.2
896,356 + DDA3937_RS04010 0.90 -0.5
896,356 + DDA3937_RS04010 0.90 -0.8
896,356 + DDA3937_RS04010 0.90 -1.0
896,357 - DDA3937_RS04010 0.90 -1.1
896,357 - DDA3937_RS04010 0.90 -0.3
896,357 - DDA3937_RS04010 0.90 -0.9
896,357 - DDA3937_RS04010 0.90 -1.1
896,357 - DDA3937_RS04010 0.90 +0.3
896,359 + DDA3937_RS04010 0.90 +0.3
896,360 - +0.5
896,360 - +4.3
896,456 + -0.8
896,456 + -0.3
896,457 - -0.1
896,553 + +0.5
896,671 + -2.5
896,671 + +0.3
896,688 + DDA3937_RS04015 0.11 -1.0
896,688 + DDA3937_RS04015 0.11 -0.5
896,689 - DDA3937_RS04015 0.12 -0.1
896,689 - DDA3937_RS04015 0.12 -0.5
896,699 + DDA3937_RS04015 0.13 -0.4
896,699 + DDA3937_RS04015 0.13 -0.4
896,700 - DDA3937_RS04015 0.13 +1.9
896,700 - DDA3937_RS04015 0.13 +0.4
896,779 - DDA3937_RS04015 0.24 +5.6
896,798 + DDA3937_RS04015 0.27 +2.7
896,799 - DDA3937_RS04015 0.27 -1.4
896,883 + DDA3937_RS04015 0.38 -0.3
896,884 - DDA3937_RS04015 0.38 +1.4
896,923 - DDA3937_RS04015 0.44 -1.8
896,934 + DDA3937_RS04015 0.45 +0.1
896,935 - DDA3937_RS04015 0.45 +0.6
896,935 - DDA3937_RS04015 0.45 +0.5
896,964 + DDA3937_RS04015 0.49 -0.3
896,964 + DDA3937_RS04015 0.49 -1.6
896,965 - DDA3937_RS04015 0.49 +0.2
896,965 - DDA3937_RS04015 0.49 -0.5
897,289 - -1.5
897,289 - -0.3
897,312 + +0.7
897,313 - -0.8
897,383 + -0.1
897,383 + -0.5
897,473 + DDA3937_RS04020 0.12 +0.1
897,473 + DDA3937_RS04020 0.12 +5.4
897,473 + DDA3937_RS04020 0.12 +0.1
897,474 - DDA3937_RS04020 0.12 +1.7
897,474 - DDA3937_RS04020 0.12 +0.1
897,542 + DDA3937_RS04020 0.18 -1.3
897,542 + DDA3937_RS04020 0.18 -0.1
897,542 + DDA3937_RS04020 0.18 +0.8
897,542 + DDA3937_RS04020 0.18 -2.5
897,543 - DDA3937_RS04020 0.18 -0.5
897,543 - DDA3937_RS04020 0.18 +0.1
897,543 - DDA3937_RS04020 0.18 -0.6
897,543 - DDA3937_RS04020 0.18 -1.0
897,543 - DDA3937_RS04020 0.18 -1.4
897,560 + DDA3937_RS04020 0.19 -0.2
897,560 + DDA3937_RS04020 0.19 -0.7
897,560 + DDA3937_RS04020 0.19 -1.8
897,560 + DDA3937_RS04020 0.19 -2.5
897,560 + DDA3937_RS04020 0.19 +3.5
897,560 + DDA3937_RS04020 0.19 +1.5
897,561 - DDA3937_RS04020 0.19 -0.4
897,561 - DDA3937_RS04020 0.19 -0.1
897,561 - DDA3937_RS04020 0.19 +0.7
897,561 - DDA3937_RS04020 0.19 -0.5
897,564 + DDA3937_RS04020 0.20 -0.6
897,564 + DDA3937_RS04020 0.20 -0.8
897,564 + DDA3937_RS04020 0.20 -0.3
897,564 + DDA3937_RS04020 0.20 -0.1
897,565 - DDA3937_RS04020 0.20 -0.8
897,565 - DDA3937_RS04020 0.20 -0.4
897,565 - DDA3937_RS04020 0.20 -0.4
897,565 - DDA3937_RS04020 0.20 -0.5
897,565 - DDA3937_RS04020 0.20 -0.2
897,565 - DDA3937_RS04020 0.20 +0.6
897,595 - DDA3937_RS04020 0.22 -0.2
897,597 + DDA3937_RS04020 0.23 -0.7
897,598 - DDA3937_RS04020 0.23 -1.5
897,682 + DDA3937_RS04020 0.30 -0.5
897,691 + DDA3937_RS04020 0.31 -0.1
897,693 + DDA3937_RS04020 0.31 -0.6
897,693 + DDA3937_RS04020 0.31 +1.3
897,693 + DDA3937_RS04020 0.31 +0.0
897,694 - DDA3937_RS04020 0.31 -0.9
897,694 - DDA3937_RS04020 0.31 -0.1
897,697 + DDA3937_RS04020 0.31 +0.0
897,698 - DDA3937_RS04020 0.31 +0.1
897,760 + DDA3937_RS04020 0.37 +0.9
897,760 + DDA3937_RS04020 0.37 -0.8
897,760 + DDA3937_RS04020 0.37 +0.2
897,761 - DDA3937_RS04020 0.37 -0.9
897,761 - DDA3937_RS04020 0.37 -1.2
897,761 - DDA3937_RS04020 0.37 -1.0
897,761 - DDA3937_RS04020 0.37 +0.1
897,804 + DDA3937_RS04020 0.40 +0.8
897,828 + DDA3937_RS04020 0.42 -0.2
897,829 - DDA3937_RS04020 0.42 -0.9
897,972 + DDA3937_RS04020 0.55 -0.9
897,973 - DDA3937_RS04020 0.55 -0.5
898,183 - DDA3937_RS04020 0.73 +0.5
898,183 - DDA3937_RS04020 0.73 -0.3
898,183 - DDA3937_RS04020 0.73 +1.1
898,183 - DDA3937_RS04020 0.73 -1.1
898,228 + DDA3937_RS04020 0.77 +1.7
898,229 - DDA3937_RS04020 0.77 -0.8
898,288 + DDA3937_RS04020 0.82 +1.3
898,289 - DDA3937_RS04020 0.82 +0.7

Or see this region's nucleotide sequence