Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03530 and DDA3937_RS03535 are separated by 227 nucleotides DDA3937_RS03535 and DDA3937_RS03540 are separated by 420 nucleotides
DDA3937_RS03530: DDA3937_RS03530 - DUF4880 domain-containing protein, at 775,973 to 776,926
_RS03530
DDA3937_RS03535: DDA3937_RS03535 - AI-2E family transporter, at 777,154 to 778,164
_RS03535
DDA3937_RS03540: DDA3937_RS03540 - MFS transporter, at 778,585 to 780,111
_RS03540
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.264 kb on + strand at 776.265 kb on - strand, within DDA3937_RS03530 at 776.285 kb on + strand, within DDA3937_RS03530 at 776.286 kb on - strand, within DDA3937_RS03530 at 776.458 kb on + strand, within DDA3937_RS03530 at 776.458 kb on + strand, within DDA3937_RS03530 at 776.527 kb on + strand, within DDA3937_RS03530 at 776.527 kb on + strand, within DDA3937_RS03530 at 776.528 kb on - strand, within DDA3937_RS03530 at 776.528 kb on - strand, within DDA3937_RS03530 at 776.573 kb on + strand, within DDA3937_RS03530 at 776.573 kb on + strand, within DDA3937_RS03530 at 776.574 kb on - strand, within DDA3937_RS03530 at 776.636 kb on + strand, within DDA3937_RS03530 at 776.636 kb on + strand, within DDA3937_RS03530 at 776.637 kb on - strand, within DDA3937_RS03530 at 776.873 kb on - strand at 776.968 kb on + strand at 776.974 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 777.030 kb on + strand at 777.048 kb on + strand at 777.051 kb on + strand at 777.052 kb on - strand at 777.131 kb on - strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.201 kb on + strand at 777.202 kb on - strand at 777.253 kb on - strand at 777.271 kb on + strand, within DDA3937_RS03535 at 777.271 kb on + strand, within DDA3937_RS03535 at 777.272 kb on - strand, within DDA3937_RS03535 at 777.357 kb on + strand, within DDA3937_RS03535 at 777.494 kb on - strand, within DDA3937_RS03535 at 777.506 kb on - strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.657 kb on + strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.764 kb on + strand, within DDA3937_RS03535 at 777.894 kb on + strand, within DDA3937_RS03535 at 777.895 kb on - strand, within DDA3937_RS03535 at 777.895 kb on - strand, within DDA3937_RS03535 at 777.970 kb on + strand, within DDA3937_RS03535 at 777.970 kb on + strand, within DDA3937_RS03535 at 777.971 kb on - strand, within DDA3937_RS03535 at 777.997 kb on + strand, within DDA3937_RS03535 at 777.998 kb on - strand, within DDA3937_RS03535 at 777.998 kb on - strand, within DDA3937_RS03535 at 777.998 kb on - strand, within DDA3937_RS03535 at 778.117 kb on + strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.120 kb on + strand at 778.121 kb on - strand at 778.121 kb on - strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.161 kb on - strand at 778.161 kb on - strand at 778.173 kb on + strand at 778.173 kb on + strand at 778.195 kb on + strand at 778.196 kb on - strand at 778.196 kb on - strand at 778.196 kb on - strand at 778.294 kb on + strand at 778.294 kb on + strand at 778.295 kb on - strand at 778.295 kb on - strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.312 kb on + strand at 778.313 kb on - strand at 778.409 kb on - strand at 778.418 kb on - strand at 778.440 kb on + strand at 778.527 kb on + strand at 778.528 kb on - strand at 778.569 kb on + strand at 778.570 kb on - strand at 778.570 kb on - strand at 778.580 kb on + strand at 778.580 kb on + strand at 778.664 kb on + strand at 778.740 kb on + strand, within DDA3937_RS03540 at 778.740 kb on + strand, within DDA3937_RS03540 at 778.776 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.803 kb on - strand, within DDA3937_RS03540 at 778.803 kb on - strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.852 kb on + strand, within DDA3937_RS03540 at 778.852 kb on + strand, within DDA3937_RS03540 at 778.852 kb on + strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.985 kb on + strand, within DDA3937_RS03540 at 778.986 kb on - strand, within DDA3937_RS03540 at 778.986 kb on - strand, within DDA3937_RS03540 at 779.042 kb on + strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.061 kb on - strand, within DDA3937_RS03540 at 779.061 kb on - strand, within DDA3937_RS03540 at 779.061 kb on - strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.068 kb on - strand, within DDA3937_RS03540 at 779.086 kb on + strand, within DDA3937_RS03540 at 779.147 kb on + strand, within DDA3937_RS03540 at 779.147 kb on + strand, within DDA3937_RS03540 at 779.147 kb on + strand, within DDA3937_RS03540 at 779.148 kb on - strand, within DDA3937_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 776,259 + DDA3937_RS03530 0.30 -0.1 776,259 + DDA3937_RS03530 0.30 +0.5 776,259 + DDA3937_RS03530 0.30 -1.1 776,260 - DDA3937_RS03530 0.30 -1.4 776,260 - DDA3937_RS03530 0.30 -0.1 776,260 - DDA3937_RS03530 0.30 +1.2 776,260 - DDA3937_RS03530 0.30 -0.3 776,264 + -0.3 776,265 - DDA3937_RS03530 0.31 +2.2 776,285 + DDA3937_RS03530 0.33 +1.2 776,286 - DDA3937_RS03530 0.33 +0.0 776,458 + DDA3937_RS03530 0.51 -1.6 776,458 + DDA3937_RS03530 0.51 -0.2 776,527 + DDA3937_RS03530 0.58 -1.0 776,527 + DDA3937_RS03530 0.58 -1.3 776,528 - DDA3937_RS03530 0.58 -1.6 776,528 - DDA3937_RS03530 0.58 +1.8 776,573 + DDA3937_RS03530 0.63 -0.6 776,573 + DDA3937_RS03530 0.63 -0.4 776,574 - DDA3937_RS03530 0.63 -0.1 776,636 + DDA3937_RS03530 0.69 +1.9 776,636 + DDA3937_RS03530 0.69 +0.7 776,637 - DDA3937_RS03530 0.70 +0.7 776,873 - -1.1 776,968 + -3.2 776,974 + +0.5 776,979 + -2.1 776,979 + -1.6 776,979 + -1.3 776,979 + -1.6 776,979 + -1.1 776,979 + +0.7 776,979 + -0.7 776,979 + -1.1 776,979 + -0.7 776,980 - -0.1 776,980 - +3.4 776,980 - +0.7 776,980 - +1.0 776,980 - +1.7 777,030 + +1.2 777,048 + -0.8 777,051 + +0.2 777,052 - -0.8 777,131 - -0.1 777,153 + -0.5 777,153 + -0.8 777,153 + -0.7 777,153 + +0.3 777,154 - -0.5 777,154 - -1.6 777,154 - -1.0 777,154 - +0.1 777,154 - -0.1 777,201 + -1.7 777,202 - +1.1 777,253 - +0.4 777,271 + DDA3937_RS03535 0.12 +1.2 777,271 + DDA3937_RS03535 0.12 -0.8 777,272 - DDA3937_RS03535 0.12 -0.2 777,357 + DDA3937_RS03535 0.20 -1.3 777,494 - DDA3937_RS03535 0.34 -0.8 777,506 - DDA3937_RS03535 0.35 +5.1 777,655 + DDA3937_RS03535 0.50 +0.6 777,655 + DDA3937_RS03535 0.50 +0.5 777,655 + DDA3937_RS03535 0.50 -0.1 777,655 + DDA3937_RS03535 0.50 -0.7 777,656 - DDA3937_RS03535 0.50 +0.1 777,656 - DDA3937_RS03535 0.50 +1.7 777,656 - DDA3937_RS03535 0.50 +3.2 777,657 + DDA3937_RS03535 0.50 +0.0 777,658 - DDA3937_RS03535 0.50 -1.0 777,658 - DDA3937_RS03535 0.50 -2.3 777,658 - DDA3937_RS03535 0.50 +0.3 777,658 - DDA3937_RS03535 0.50 -0.4 777,764 + DDA3937_RS03535 0.60 -0.0 777,894 + DDA3937_RS03535 0.73 +0.4 777,895 - DDA3937_RS03535 0.73 -2.7 777,895 - DDA3937_RS03535 0.73 -0.8 777,970 + DDA3937_RS03535 0.81 -0.9 777,970 + DDA3937_RS03535 0.81 -1.5 777,971 - DDA3937_RS03535 0.81 -0.4 777,997 + DDA3937_RS03535 0.83 -0.8 777,998 - DDA3937_RS03535 0.83 +0.2 777,998 - DDA3937_RS03535 0.83 +0.4 777,998 - DDA3937_RS03535 0.83 +0.7 778,117 + -0.6 778,118 - -1.0 778,118 - -1.1 778,118 - -1.4 778,118 - -1.5 778,118 - -1.4 778,118 - +0.2 778,118 - -0.3 778,118 - -0.8 778,118 - -1.3 778,120 + +0.1 778,121 - +1.3 778,121 - +0.4 778,160 + +1.0 778,160 + +1.1 778,160 + +1.2 778,160 + -2.3 778,160 + -0.7 778,161 - -1.8 778,161 - +0.2 778,173 + +0.7 778,173 + +1.5 778,195 + +0.2 778,196 - -0.3 778,196 - -1.3 778,196 - -0.7 778,294 + +0.0 778,294 + -0.8 778,295 - -0.0 778,295 - -0.7 778,307 + -1.3 778,307 + +3.4 778,307 + -1.2 778,307 + -1.6 778,307 + -1.6 778,307 + -0.1 778,307 + -0.7 778,308 - -1.3 778,308 - -0.6 778,308 - -0.5 778,308 - +0.4 778,308 - -0.3 778,308 - +0.6 778,308 - -1.0 778,308 - -0.3 778,312 + +0.5 778,313 - -2.2 778,409 - +0.1 778,418 - -0.3 778,440 + +0.7 778,527 + +0.8 778,528 - -1.5 778,569 + -0.3 778,570 - +0.2 778,570 - -0.5 778,580 + +2.1 778,580 + -0.0 778,664 + -0.8 778,740 + DDA3937_RS03540 0.10 +0.5 778,740 + DDA3937_RS03540 0.10 +0.0 778,776 + DDA3937_RS03540 0.13 -1.3 778,802 + DDA3937_RS03540 0.14 +0.4 778,802 + DDA3937_RS03540 0.14 -0.8 778,802 + DDA3937_RS03540 0.14 -0.8 778,802 + DDA3937_RS03540 0.14 +1.0 778,803 - DDA3937_RS03540 0.14 +0.4 778,803 - DDA3937_RS03540 0.14 -1.6 778,805 + DDA3937_RS03540 0.14 -3.0 778,805 + DDA3937_RS03540 0.14 -0.4 778,805 + DDA3937_RS03540 0.14 -0.6 778,805 + DDA3937_RS03540 0.14 -0.2 778,805 + DDA3937_RS03540 0.14 -0.1 778,805 + DDA3937_RS03540 0.14 +0.3 778,805 + DDA3937_RS03540 0.14 -0.6 778,805 + DDA3937_RS03540 0.14 -1.7 778,805 - DDA3937_RS03540 0.14 -0.7 778,806 - DDA3937_RS03540 0.14 -0.8 778,806 - DDA3937_RS03540 0.14 -0.1 778,806 - DDA3937_RS03540 0.14 +0.2 778,806 - DDA3937_RS03540 0.14 +1.2 778,806 - DDA3937_RS03540 0.14 +0.6 778,852 + DDA3937_RS03540 0.17 -1.8 778,852 + DDA3937_RS03540 0.17 -0.3 778,852 + DDA3937_RS03540 0.17 -2.4 778,853 - DDA3937_RS03540 0.18 +0.7 778,853 - DDA3937_RS03540 0.18 -1.8 778,853 - DDA3937_RS03540 0.18 -0.3 778,853 - DDA3937_RS03540 0.18 +0.0 778,985 + DDA3937_RS03540 0.26 -0.3 778,986 - DDA3937_RS03540 0.26 -1.5 778,986 - DDA3937_RS03540 0.26 +0.2 779,042 + DDA3937_RS03540 0.30 -0.3 779,043 - DDA3937_RS03540 0.30 +0.4 779,043 - DDA3937_RS03540 0.30 +1.6 779,043 - DDA3937_RS03540 0.30 -0.5 779,043 - DDA3937_RS03540 0.30 +1.5 779,061 - DDA3937_RS03540 0.31 -2.3 779,061 - DDA3937_RS03540 0.31 -2.1 779,061 - DDA3937_RS03540 0.31 -1.8 779,063 + DDA3937_RS03540 0.31 +2.0 779,063 + +2.7 779,063 + DDA3937_RS03540 0.31 +0.0 779,063 + DDA3937_RS03540 0.31 -2.4 779,063 + DDA3937_RS03540 0.31 -0.5 779,063 + DDA3937_RS03540 0.31 -2.1 779,063 + DDA3937_RS03540 0.31 -1.1 779,063 + DDA3937_RS03540 0.31 +2.7 779,064 - DDA3937_RS03540 0.31 +1.2 779,064 - DDA3937_RS03540 0.31 +12.0 779,064 - DDA3937_RS03540 0.31 -1.0 779,064 - DDA3937_RS03540 0.31 +0.2 779,064 - DDA3937_RS03540 0.31 -1.4 779,068 - DDA3937_RS03540 0.32 -0.2 779,086 + DDA3937_RS03540 0.33 -1.2 779,147 + DDA3937_RS03540 0.37 -0.8 779,147 + DDA3937_RS03540 0.37 +0.2 779,147 + DDA3937_RS03540 0.37 -0.8 779,148 - DDA3937_RS03540 0.37 +0.6
Or see this region's nucleotide sequence