Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03350 and DDA3937_RS03355 are separated by 85 nucleotides DDA3937_RS03355 and DDA3937_RS03365 are separated by 154 nucleotides DDA3937_RS03365 and DDA3937_RS03370 are separated by 94 nucleotides
DDA3937_RS03350: DDA3937_RS03350 - LysE family transporter, at 732,938 to 733,609
_RS03350
DDA3937_RS03355: DDA3937_RS03355 - tRNA-Gly, at 733,695 to 733,768
_RS03355
DDA3937_RS03365: DDA3937_RS03365 - IS3 family transposase, at 733,923 to 735,022
_RS03365
DDA3937_RS03370: DDA3937_RS03370 - RelA/SpoT domain-containing protein, at 735,117 to 736,229
_RS03370
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 732.923 kb on + strand at 732.924 kb on - strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.942 kb on + strand at 732.942 kb on + strand at 733.006 kb on + strand, within DDA3937_RS03350 at 733.016 kb on - strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.134 kb on - strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.144 kb on - strand, within DDA3937_RS03350 at 733.345 kb on - strand, within DDA3937_RS03350 at 733.458 kb on + strand, within DDA3937_RS03350 at 733.474 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.580 kb on + strand at 733.621 kb on - strand at 733.673 kb on + strand at 733.674 kb on - strand at 733.675 kb on + strand at 733.675 kb on + strand at 733.676 kb on - strand at 733.702 kb on + strand at 733.713 kb on + strand, within DDA3937_RS03355 at 733.714 kb on - strand at 733.714 kb on - strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.737 kb on - strand, within DDA3937_RS03355 at 733.798 kb on - strand at 733.828 kb on + strand at 733.828 kb on + strand at 733.829 kb on - strand at 733.829 kb on - strand at 733.829 kb on - strand at 733.832 kb on + strand at 733.832 kb on + strand at 733.832 kb on + strand at 733.833 kb on - strand at 733.833 kb on - strand at 733.833 kb on - strand at 733.873 kb on + strand at 733.884 kb on - strand at 734.037 kb on + strand, within DDA3937_RS03365 at 734.240 kb on - strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.343 kb on + strand, within DDA3937_RS03365 at 734.363 kb on + strand, within DDA3937_RS03365 at 734.392 kb on - strand, within DDA3937_RS03365 at 734.438 kb on + strand, within DDA3937_RS03365 at 734.439 kb on - strand, within DDA3937_RS03365 at 734.601 kb on + strand, within DDA3937_RS03365 at 734.602 kb on - strand, within DDA3937_RS03365 at 734.609 kb on - strand, within DDA3937_RS03365 at 734.676 kb on + strand, within DDA3937_RS03365 at 734.677 kb on - strand at 734.677 kb on - strand, within DDA3937_RS03365 at 734.719 kb on + strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.746 kb on + strand, within DDA3937_RS03365 at 734.775 kb on - strand, within DDA3937_RS03365 at 734.833 kb on + strand, within DDA3937_RS03365 at 734.833 kb on + strand, within DDA3937_RS03365 at 734.845 kb on + strand, within DDA3937_RS03365 at 734.846 kb on - strand, within DDA3937_RS03365 at 734.889 kb on + strand, within DDA3937_RS03365 at 734.936 kb on + strand at 734.936 kb on + strand at 734.938 kb on + strand at 734.939 kb on - strand at 734.939 kb on - strand at 734.939 kb on - strand at 734.964 kb on + strand at 734.965 kb on - strand at 735.026 kb on - strand at 735.097 kb on + strand at 735.097 kb on + strand at 735.101 kb on + strand at 735.116 kb on - strand at 735.148 kb on - strand at 735.194 kb on - strand at 735.238 kb on - strand, within DDA3937_RS03370 at 735.253 kb on - strand, within DDA3937_RS03370 at 735.256 kb on - strand, within DDA3937_RS03370 at 735.345 kb on - strand, within DDA3937_RS03370 at 735.416 kb on + strand, within DDA3937_RS03370 at 735.426 kb on - strand, within DDA3937_RS03370 at 735.428 kb on + strand, within DDA3937_RS03370 at 735.429 kb on - strand, within DDA3937_RS03370 at 735.457 kb on - strand, within DDA3937_RS03370 at 735.461 kb on + strand, within DDA3937_RS03370 at 735.469 kb on - strand, within DDA3937_RS03370 at 735.474 kb on + strand, within DDA3937_RS03370 at 735.475 kb on - strand, within DDA3937_RS03370 at 735.486 kb on + strand, within DDA3937_RS03370 at 735.496 kb on - strand, within DDA3937_RS03370 at 735.496 kb on - strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.535 kb on - strand, within DDA3937_RS03370 at 735.559 kb on - strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.574 kb on - strand at 735.582 kb on + strand, within DDA3937_RS03370 at 735.641 kb on + strand, within DDA3937_RS03370 at 735.753 kb on - strand, within DDA3937_RS03370 at 735.754 kb on + strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.856 kb on - strand, within DDA3937_RS03370 at 735.858 kb on + strand, within DDA3937_RS03370 at 735.859 kb on - strand, within DDA3937_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 732,923 + +0.4 732,924 - +0.8 732,937 + +0.1 732,937 + -0.8 732,937 + -1.0 732,937 + +0.3 732,937 + -1.0 732,937 + -0.4 732,937 + -2.0 732,937 + -1.5 732,937 + +0.0 732,937 + -1.0 732,937 + +0.1 732,937 + -0.6 732,938 - -1.0 732,938 - -0.4 732,938 - +1.2 732,938 - +0.4 732,938 - -0.5 732,938 - -1.6 732,938 - -0.3 732,938 - -0.9 732,938 - -0.9 732,942 + -0.8 732,942 + +1.8 733,006 + DDA3937_RS03350 0.10 +0.2 733,016 - DDA3937_RS03350 0.12 -0.2 733,133 + DDA3937_RS03350 0.29 +0.2 733,133 + DDA3937_RS03350 0.29 +0.3 733,133 + DDA3937_RS03350 0.29 +1.9 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 -0.7 733,133 + DDA3937_RS03350 0.29 +0.4 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 +0.4 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 +0.2 733,133 + DDA3937_RS03350 0.29 -0.7 733,133 + DDA3937_RS03350 0.29 -0.6 733,134 - DDA3937_RS03350 0.29 -1.0 733,135 + DDA3937_RS03350 0.29 +2.2 733,135 + DDA3937_RS03350 0.29 +1.0 733,135 + DDA3937_RS03350 0.29 +0.7 733,136 - DDA3937_RS03350 0.29 +0.2 733,136 - DDA3937_RS03350 0.29 +0.2 733,144 - DDA3937_RS03350 0.31 -2.8 733,345 - DDA3937_RS03350 0.61 +0.0 733,458 + DDA3937_RS03350 0.77 -0.9 733,474 - DDA3937_RS03350 0.80 +0.5 733,518 - DDA3937_RS03350 0.86 +1.2 733,518 - DDA3937_RS03350 0.86 +0.2 733,580 + -0.0 733,621 - -1.6 733,673 + +0.3 733,674 - -0.9 733,675 + -0.0 733,675 + -0.8 733,676 - -0.0 733,702 + -2.3 733,713 + DDA3937_RS03355 0.24 +0.2 733,714 - -0.6 733,714 - DDA3937_RS03355 0.26 -0.2 733,736 + DDA3937_RS03355 0.55 -0.6 733,736 + DDA3937_RS03355 0.55 -0.8 733,737 - DDA3937_RS03355 0.57 -0.0 733,798 - +0.2 733,828 + -0.2 733,828 + -0.2 733,829 - -0.9 733,829 - -0.9 733,829 - -1.4 733,832 + -1.1 733,832 + -0.7 733,832 + -0.6 733,833 - +0.2 733,833 - -0.3 733,833 - -0.4 733,873 + -0.1 733,884 - +0.4 734,037 + DDA3937_RS03365 0.10 +0.4 734,240 - DDA3937_RS03365 0.29 -0.9 734,288 + DDA3937_RS03365 0.33 -1.6 734,288 + DDA3937_RS03365 0.33 +0.1 734,289 - DDA3937_RS03365 0.33 -1.0 734,289 - DDA3937_RS03365 0.33 -1.2 734,343 + DDA3937_RS03365 0.38 -1.2 734,363 + DDA3937_RS03365 0.40 -0.8 734,392 - DDA3937_RS03365 0.43 +0.4 734,438 + DDA3937_RS03365 0.47 +0.9 734,439 - DDA3937_RS03365 0.47 +0.1 734,601 + DDA3937_RS03365 0.62 -1.1 734,602 - DDA3937_RS03365 0.62 -1.6 734,609 - DDA3937_RS03365 0.62 -0.2 734,676 + DDA3937_RS03365 0.68 +3.1 734,677 - -0.2 734,677 - DDA3937_RS03365 0.69 +0.6 734,719 + DDA3937_RS03365 0.72 -1.2 734,720 - DDA3937_RS03365 0.72 +2.2 734,720 - DDA3937_RS03365 0.72 +0.4 734,746 + DDA3937_RS03365 0.75 -1.9 734,775 - DDA3937_RS03365 0.77 +1.5 734,833 + DDA3937_RS03365 0.83 -0.1 734,833 + DDA3937_RS03365 0.83 +2.3 734,845 + DDA3937_RS03365 0.84 -0.7 734,846 - DDA3937_RS03365 0.84 -0.6 734,889 + DDA3937_RS03365 0.88 -1.0 734,936 + +0.0 734,936 + -0.8 734,938 + -0.6 734,939 - +0.3 734,939 - +0.4 734,939 - +0.5 734,964 + -0.8 734,965 - +1.8 735,026 - -0.3 735,097 + +0.3 735,097 + -1.4 735,101 + -0.1 735,116 - -1.7 735,148 - -1.2 735,194 - -0.6 735,238 - DDA3937_RS03370 0.11 +0.9 735,253 - DDA3937_RS03370 0.12 +0.2 735,256 - DDA3937_RS03370 0.12 -0.1 735,345 - DDA3937_RS03370 0.20 -0.2 735,416 + DDA3937_RS03370 0.27 -1.2 735,426 - DDA3937_RS03370 0.28 -1.8 735,428 + DDA3937_RS03370 0.28 -0.8 735,429 - DDA3937_RS03370 0.28 +1.8 735,457 - DDA3937_RS03370 0.31 -1.1 735,461 + DDA3937_RS03370 0.31 -0.2 735,469 - DDA3937_RS03370 0.32 +0.3 735,474 + DDA3937_RS03370 0.32 -1.3 735,475 - DDA3937_RS03370 0.32 -1.6 735,486 + DDA3937_RS03370 0.33 +0.9 735,496 - DDA3937_RS03370 0.34 +0.2 735,496 - DDA3937_RS03370 0.34 +0.9 735,534 + DDA3937_RS03370 0.37 -0.2 735,534 + DDA3937_RS03370 0.37 +0.8 735,534 + DDA3937_RS03370 0.37 -0.7 735,535 - DDA3937_RS03370 0.38 +1.9 735,559 - DDA3937_RS03370 0.40 -2.1 735,561 + DDA3937_RS03370 0.40 -0.3 735,561 + DDA3937_RS03370 0.40 -1.5 735,561 + DDA3937_RS03370 0.40 +0.4 735,562 - DDA3937_RS03370 0.40 -1.9 735,562 - DDA3937_RS03370 0.40 -0.4 735,562 - DDA3937_RS03370 0.40 +0.1 735,574 - -0.6 735,582 + DDA3937_RS03370 0.42 -0.2 735,641 + DDA3937_RS03370 0.47 -1.4 735,753 - DDA3937_RS03370 0.57 -1.5 735,754 + DDA3937_RS03370 0.57 +0.4 735,755 - DDA3937_RS03370 0.57 -1.2 735,755 - DDA3937_RS03370 0.57 +1.0 735,755 - DDA3937_RS03370 0.57 -1.2 735,755 - DDA3937_RS03370 0.57 -0.8 735,825 + DDA3937_RS03370 0.64 -1.4 735,825 + DDA3937_RS03370 0.64 -0.8 735,856 - DDA3937_RS03370 0.66 -0.2 735,858 + DDA3937_RS03370 0.67 -0.4 735,859 - DDA3937_RS03370 0.67 -0.0
Or see this region's nucleotide sequence