Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01855 and DDA3937_RS01860 are separated by 795 nucleotides DDA3937_RS01860 and DDA3937_RS01865 are separated by 385 nucleotides DDA3937_RS01865 and DDA3937_RS01870 are separated by 108 nucleotides
DDA3937_RS01855: DDA3937_RS01855 - aminoimidazole riboside kinase, at 412,577 to 413,500
_RS01855
DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804
_RS01860
DDA3937_RS01865: DDA3937_RS01865 - YhbP family protein, at 416,190 to 416,642
_RS01865
DDA3937_RS01870: DDA3937_RS01870 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 416,751 to 417,215
_RS01870
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 413.433 kb on + strand at 413.486 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.504 kb on + strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.521 kb on + strand at 413.525 kb on + strand at 413.525 kb on + strand at 413.662 kb on + strand at 413.663 kb on - strand at 413.710 kb on + strand at 413.715 kb on - strand at 413.727 kb on + strand at 413.734 kb on + strand at 413.735 kb on - strand at 413.749 kb on - strand at 413.751 kb on + strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.762 kb on + strand at 413.763 kb on - strand at 413.763 kb on - strand at 413.765 kb on + strand at 413.765 kb on + strand at 413.766 kb on - strand at 413.768 kb on - strand at 413.772 kb on - strand at 413.784 kb on + strand at 413.785 kb on - strand at 413.809 kb on + strand at 413.817 kb on - strand at 413.870 kb on + strand at 413.875 kb on + strand at 413.875 kb on + strand at 413.876 kb on - strand at 413.876 kb on - strand at 413.905 kb on - strand at 413.950 kb on + strand at 413.951 kb on - strand at 414.008 kb on - strand at 414.008 kb on - strand at 414.105 kb on - strand at 414.118 kb on + strand at 414.118 kb on + strand at 414.119 kb on - strand at 414.242 kb on + strand at 414.289 kb on + strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.333 kb on + strand at 414.334 kb on - strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.392 kb on - strand at 414.392 kb on - strand at 414.595 kb on + strand, within DDA3937_RS01860 at 414.602 kb on + strand, within DDA3937_RS01860 at 414.602 kb on + strand, within DDA3937_RS01860 at 414.603 kb on - strand, within DDA3937_RS01860 at 414.645 kb on + strand, within DDA3937_RS01860 at 414.645 kb on + strand, within DDA3937_RS01860 at 414.646 kb on - strand at 414.889 kb on - strand, within DDA3937_RS01860 at 414.889 kb on - strand, within DDA3937_RS01860 at 415.250 kb on + strand, within DDA3937_RS01860 at 415.364 kb on + strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.415 kb on + strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.510 kb on + strand, within DDA3937_RS01860 at 415.511 kb on - strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.632 kb on - strand, within DDA3937_RS01860 at 415.677 kb on + strand at 415.677 kb on + strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.714 kb on + strand at 415.714 kb on + strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.717 kb on + strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.753 kb on - strand at 415.870 kb on + strand at 415.889 kb on + strand at 415.916 kb on + strand at 415.916 kb on + strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 416.071 kb on + strand at 416.090 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.129 kb on - strand at 416.164 kb on - strand at 416.204 kb on + strand at 416.205 kb on - strand at 416.226 kb on + strand at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.328 kb on + strand, within DDA3937_RS01865 at 416.367 kb on - strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.622 kb on - strand at 416.640 kb on + strand at 416.640 kb on + strand at 416.641 kb on - strand at 416.690 kb on - strand at 416.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 413,433 + -0.7 413,486 + -0.6 413,500 + -1.4 413,500 + +0.1 413,500 + -0.5 413,500 + -0.7 413,500 + -0.6 413,500 + -1.4 413,501 - -0.4 413,501 - -1.0 413,501 - -3.0 413,501 - -0.2 413,501 - -1.0 413,504 + -2.2 413,505 - +0.8 413,505 - +0.1 413,505 - -0.1 413,521 + +0.6 413,525 + +0.7 413,525 + -1.2 413,662 + -0.4 413,663 - +0.4 413,710 + -0.7 413,715 - +2.1 413,727 + -0.0 413,734 + +0.4 413,735 - -0.6 413,749 - -1.0 413,751 + -0.6 413,754 - -1.5 413,754 - -0.1 413,754 - +1.6 413,757 - -0.5 413,757 - -0.5 413,757 - -0.8 413,757 - -1.3 413,762 + -0.6 413,763 - +3.1 413,763 - +2.2 413,765 + -0.8 413,765 + -1.1 413,766 - -0.9 413,768 - -2.1 413,772 - -2.7 413,784 + +0.0 413,785 - -2.0 413,809 + -2.1 413,817 - -1.8 413,870 + -0.5 413,875 + -1.0 413,875 + +0.0 413,876 - -0.1 413,876 - +0.2 413,905 - -1.8 413,950 + -0.6 413,951 - -0.2 414,008 - +1.2 414,008 - -0.8 414,105 - +0.5 414,118 + +0.5 414,118 + -1.2 414,119 - +0.8 414,242 + -0.1 414,289 + -2.3 414,290 - +0.7 414,290 - +0.1 414,290 - -0.3 414,290 - -1.1 414,290 - -0.4 414,333 + +0.2 414,334 - +1.2 414,391 + -0.1 414,391 + -0.5 414,391 + -0.5 414,391 + +2.9 414,391 + -0.4 414,391 + +0.2 414,392 - -1.8 414,392 - +0.8 414,595 + DDA3937_RS01860 0.20 +0.6 414,602 + DDA3937_RS01860 0.20 +0.5 414,602 + DDA3937_RS01860 0.20 +0.5 414,603 - DDA3937_RS01860 0.20 -1.4 414,645 + DDA3937_RS01860 0.23 -1.6 414,645 + DDA3937_RS01860 0.23 +1.2 414,646 - -0.8 414,889 - DDA3937_RS01860 0.39 -1.1 414,889 - DDA3937_RS01860 0.39 +0.7 415,250 + DDA3937_RS01860 0.63 +0.9 415,364 + DDA3937_RS01860 0.71 +0.0 415,365 - DDA3937_RS01860 0.71 -0.8 415,365 - DDA3937_RS01860 0.71 -0.5 415,376 - DDA3937_RS01860 0.72 +0.2 415,376 - DDA3937_RS01860 0.72 -2.6 415,407 + DDA3937_RS01860 0.74 -0.2 415,407 + DDA3937_RS01860 0.74 +1.9 415,407 + DDA3937_RS01860 0.74 -0.5 415,415 + DDA3937_RS01860 0.74 +0.8 415,416 - DDA3937_RS01860 0.74 +0.9 415,416 - DDA3937_RS01860 0.74 -1.6 415,510 + DDA3937_RS01860 0.80 +0.6 415,511 - DDA3937_RS01860 0.81 -0.9 415,562 + DDA3937_RS01860 0.84 -0.6 415,562 + DDA3937_RS01860 0.84 +0.8 415,562 + DDA3937_RS01860 0.84 +0.5 415,562 + DDA3937_RS01860 0.84 +0.8 415,562 + DDA3937_RS01860 0.84 -0.2 415,563 - DDA3937_RS01860 0.84 -0.2 415,563 - DDA3937_RS01860 0.84 -0.3 415,563 - DDA3937_RS01860 0.84 -0.6 415,625 + DDA3937_RS01860 0.88 +1.0 415,625 + DDA3937_RS01860 0.88 +0.3 415,625 + DDA3937_RS01860 0.88 +6.8 415,625 + DDA3937_RS01860 0.88 -0.9 415,625 + DDA3937_RS01860 0.88 +0.8 415,625 + DDA3937_RS01860 0.88 -0.8 415,625 + DDA3937_RS01860 0.88 -2.4 415,625 + DDA3937_RS01860 0.88 -0.7 415,626 - DDA3937_RS01860 0.88 -0.0 415,626 - DDA3937_RS01860 0.88 -0.1 415,626 - DDA3937_RS01860 0.88 -2.0 415,626 - DDA3937_RS01860 0.88 -0.1 415,626 - DDA3937_RS01860 0.88 +0.5 415,626 - DDA3937_RS01860 0.88 +5.4 415,626 - DDA3937_RS01860 0.88 -0.2 415,632 - DDA3937_RS01860 0.89 -1.9 415,677 + -3.0 415,677 + -0.2 415,678 - -1.6 415,678 - -0.9 415,678 - +1.6 415,678 - +0.0 415,678 - +0.9 415,678 - -1.0 415,678 - -0.5 415,714 + -0.8 415,714 + -0.4 415,715 - -0.9 415,715 - +1.6 415,715 - -0.6 415,717 + -1.0 415,718 - +0.1 415,718 - -1.3 415,718 - -1.0 415,753 - -1.7 415,870 + -2.3 415,889 + -0.8 415,916 + +0.1 415,916 + +1.0 415,917 - +0.6 415,917 - -0.6 415,917 - -1.5 415,920 + -0.6 415,920 + +0.8 415,920 + -0.7 415,920 + -2.7 415,920 + +1.5 415,920 + -0.5 415,920 + -2.0 415,920 + +0.0 415,921 - +1.0 415,921 - -1.0 415,921 - -1.0 415,921 - -1.4 415,975 + -1.0 415,975 + -0.5 415,975 + +1.0 415,975 + -1.0 415,975 + -1.8 415,976 - -0.9 415,976 - -1.0 415,976 - -0.4 415,976 - +0.2 416,071 + -1.4 416,090 + +0.1 416,112 + +0.0 416,112 + -0.4 416,112 + +1.3 416,113 - -1.2 416,113 - +2.0 416,113 - -2.0 416,113 - +0.5 416,129 - -1.2 416,164 - -0.9 416,204 + +0.3 416,205 - -0.5 416,226 + -1.1 416,278 + DDA3937_RS01865 0.19 -0.2 416,278 + DDA3937_RS01865 0.19 +0.2 416,278 + DDA3937_RS01865 0.19 +0.5 416,298 + DDA3937_RS01865 0.24 +1.6 416,298 + DDA3937_RS01865 0.24 -1.8 416,328 + DDA3937_RS01865 0.30 -1.6 416,367 - DDA3937_RS01865 0.39 -0.9 416,499 + DDA3937_RS01865 0.68 -0.9 416,499 + DDA3937_RS01865 0.68 -1.9 416,501 + DDA3937_RS01865 0.69 -0.7 416,501 + DDA3937_RS01865 0.69 -1.9 416,622 - -0.9 416,640 + -1.4 416,640 + -0.0 416,641 - +0.3 416,690 - +2.1 416,692 - -0.2
Or see this region's nucleotide sequence