Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01790 and DDA3937_RS01795 are separated by 59 nucleotides DDA3937_RS01795 and DDA3937_RS01800 are separated by 187 nucleotides
DDA3937_RS01790: DDA3937_RS01790 - cell division protein FtsP, at 397,116 to 398,534
_RS01790
DDA3937_RS01795: DDA3937_RS01795 - 2,5-didehydrogluconate reductase DkgA, at 398,594 to 399,439
_RS01795
DDA3937_RS01800: DDA3937_RS01800 - alcohol dehydrogenase, at 399,627 to 400,790
_RS01800
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 397.610 kb on + strand, within DDA3937_RS01790 at 397.610 kb on + strand at 397.611 kb on - strand, within DDA3937_RS01790 at 397.611 kb on - strand, within DDA3937_RS01790 at 397.611 kb on - strand, within DDA3937_RS01790 at 397.611 kb on - strand, within DDA3937_RS01790 at 397.645 kb on - strand, within DDA3937_RS01790 at 397.692 kb on - strand, within DDA3937_RS01790 at 397.710 kb on + strand, within DDA3937_RS01790 at 397.711 kb on - strand, within DDA3937_RS01790 at 397.737 kb on - strand, within DDA3937_RS01790 at 397.776 kb on + strand, within DDA3937_RS01790 at 397.777 kb on - strand, within DDA3937_RS01790 at 397.777 kb on - strand, within DDA3937_RS01790 at 397.840 kb on - strand, within DDA3937_RS01790 at 397.840 kb on - strand, within DDA3937_RS01790 at 397.967 kb on + strand, within DDA3937_RS01790 at 397.967 kb on + strand, within DDA3937_RS01790 at 397.968 kb on - strand, within DDA3937_RS01790 at 398.054 kb on + strand, within DDA3937_RS01790 at 398.055 kb on - strand, within DDA3937_RS01790 at 398.055 kb on - strand, within DDA3937_RS01790 at 398.147 kb on + strand, within DDA3937_RS01790 at 398.245 kb on + strand, within DDA3937_RS01790 at 398.245 kb on + strand, within DDA3937_RS01790 at 398.246 kb on - strand, within DDA3937_RS01790 at 398.246 kb on - strand, within DDA3937_RS01790 at 398.266 kb on - strand, within DDA3937_RS01790 at 398.281 kb on + strand, within DDA3937_RS01790 at 398.337 kb on - strand, within DDA3937_RS01790 at 398.460 kb on + strand at 398.461 kb on - strand at 398.463 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.679 kb on - strand, within DDA3937_RS01795 at 399.026 kb on - strand, within DDA3937_RS01795 at 399.061 kb on + strand, within DDA3937_RS01795 at 399.093 kb on + strand, within DDA3937_RS01795 at 399.093 kb on + strand, within DDA3937_RS01795 at 399.093 kb on + strand, within DDA3937_RS01795 at 399.094 kb on - strand, within DDA3937_RS01795 at 399.129 kb on + strand, within DDA3937_RS01795 at 399.141 kb on + strand, within DDA3937_RS01795 at 399.141 kb on + strand, within DDA3937_RS01795 at 399.142 kb on - strand, within DDA3937_RS01795 at 399.229 kb on + strand, within DDA3937_RS01795 at 399.258 kb on - strand, within DDA3937_RS01795 at 399.258 kb on - strand, within DDA3937_RS01795 at 399.288 kb on + strand, within DDA3937_RS01795 at 399.288 kb on + strand, within DDA3937_RS01795 at 399.289 kb on - strand, within DDA3937_RS01795 at 399.292 kb on + strand, within DDA3937_RS01795 at 399.386 kb on + strand at 399.386 kb on + strand at 399.400 kb on + strand at 399.401 kb on - strand at 399.401 kb on - strand at 399.419 kb on - strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.598 kb on + strand at 399.599 kb on - strand at 399.605 kb on - strand at 399.605 kb on - strand at 399.605 kb on - strand at 399.643 kb on + strand at 399.643 kb on + strand at 399.644 kb on - strand at 399.644 kb on - strand at 399.644 kb on - strand at 399.871 kb on + strand, within DDA3937_RS01800 at 399.872 kb on - strand, within DDA3937_RS01800 at 399.933 kb on - strand, within DDA3937_RS01800 at 400.078 kb on + strand, within DDA3937_RS01800 at 400.078 kb on + strand, within DDA3937_RS01800 at 400.078 kb on + strand, within DDA3937_RS01800 at 400.079 kb on - strand at 400.079 kb on - strand, within DDA3937_RS01800 at 400.079 kb on - strand, within DDA3937_RS01800 at 400.079 kb on - strand, within DDA3937_RS01800 at 400.183 kb on + strand, within DDA3937_RS01800 at 400.184 kb on - strand, within DDA3937_RS01800 at 400.184 kb on - strand, within DDA3937_RS01800 at 400.197 kb on - strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 397,610 + DDA3937_RS01790 0.35 +0.0 397,610 + +0.0 397,611 - DDA3937_RS01790 0.35 +0.7 397,611 - DDA3937_RS01790 0.35 -1.0 397,611 - DDA3937_RS01790 0.35 -0.3 397,611 - DDA3937_RS01790 0.35 -0.9 397,645 - DDA3937_RS01790 0.37 -0.2 397,692 - DDA3937_RS01790 0.41 -0.6 397,710 + DDA3937_RS01790 0.42 -2.6 397,711 - DDA3937_RS01790 0.42 -0.3 397,737 - DDA3937_RS01790 0.44 +0.7 397,776 + DDA3937_RS01790 0.47 +0.6 397,777 - DDA3937_RS01790 0.47 +0.5 397,777 - DDA3937_RS01790 0.47 -0.6 397,840 - DDA3937_RS01790 0.51 +0.2 397,840 - DDA3937_RS01790 0.51 -0.7 397,967 + DDA3937_RS01790 0.60 -0.2 397,967 + DDA3937_RS01790 0.60 -0.9 397,968 - DDA3937_RS01790 0.60 -0.2 398,054 + DDA3937_RS01790 0.66 +0.4 398,055 - DDA3937_RS01790 0.66 -1.2 398,055 - DDA3937_RS01790 0.66 -0.7 398,147 + DDA3937_RS01790 0.73 +1.3 398,245 + DDA3937_RS01790 0.80 -0.4 398,245 + DDA3937_RS01790 0.80 -0.5 398,246 - DDA3937_RS01790 0.80 +1.5 398,246 - DDA3937_RS01790 0.80 +0.2 398,266 - DDA3937_RS01790 0.81 -0.3 398,281 + DDA3937_RS01790 0.82 -1.1 398,337 - DDA3937_RS01790 0.86 +0.9 398,460 + +0.6 398,461 - +0.4 398,463 + +0.4 398,678 + -0.2 398,678 + -0.1 398,678 + -0.5 398,678 + -0.4 398,678 + -1.6 398,679 - DDA3937_RS01795 0.10 -0.1 399,026 - DDA3937_RS01795 0.51 +1.8 399,061 + DDA3937_RS01795 0.55 +0.0 399,093 + DDA3937_RS01795 0.59 -0.3 399,093 + DDA3937_RS01795 0.59 -0.1 399,093 + DDA3937_RS01795 0.59 +0.2 399,094 - DDA3937_RS01795 0.59 +8.0 399,129 + DDA3937_RS01795 0.63 -0.4 399,141 + DDA3937_RS01795 0.65 -0.3 399,141 + DDA3937_RS01795 0.65 -0.4 399,142 - DDA3937_RS01795 0.65 +1.5 399,229 + DDA3937_RS01795 0.75 -0.6 399,258 - DDA3937_RS01795 0.78 -0.8 399,258 - DDA3937_RS01795 0.78 -1.3 399,288 + DDA3937_RS01795 0.82 -1.3 399,288 + DDA3937_RS01795 0.82 +0.4 399,289 - DDA3937_RS01795 0.82 +0.7 399,292 + DDA3937_RS01795 0.83 +0.3 399,386 + -2.5 399,386 + -0.2 399,400 + -0.8 399,401 - -1.0 399,401 - -0.6 399,419 - -1.5 399,454 + -1.5 399,454 + -0.1 399,454 + -1.3 399,454 + -1.0 399,454 + -2.3 399,454 + -0.5 399,454 + -1.1 399,454 + -1.3 399,454 + +1.1 399,454 + -1.0 399,454 + +0.1 399,455 - +2.3 399,455 - -1.6 399,455 - -0.7 399,455 - +1.2 399,455 - -0.3 399,455 - -1.2 399,455 - +1.4 399,455 - -0.5 399,455 - -1.3 399,455 - -1.3 399,598 + +0.3 399,599 - -0.1 399,605 - -0.8 399,605 - -1.0 399,605 - -1.2 399,643 + +0.8 399,643 + -0.5 399,644 - +0.0 399,644 - +0.1 399,644 - -2.4 399,871 + DDA3937_RS01800 0.21 -1.8 399,872 - DDA3937_RS01800 0.21 -0.5 399,933 - DDA3937_RS01800 0.26 +0.6 400,078 + DDA3937_RS01800 0.39 -0.6 400,078 + DDA3937_RS01800 0.39 -0.5 400,078 + DDA3937_RS01800 0.39 -0.4 400,079 - +0.2 400,079 - DDA3937_RS01800 0.39 -1.1 400,079 - DDA3937_RS01800 0.39 -1.3 400,079 - DDA3937_RS01800 0.39 +0.6 400,183 + DDA3937_RS01800 0.48 +1.2 400,184 - DDA3937_RS01800 0.48 +0.7 400,184 - DDA3937_RS01800 0.48 -0.5 400,197 - DDA3937_RS01800 0.49 +0.7 400,249 + DDA3937_RS01800 0.53 -2.0 400,249 + DDA3937_RS01800 0.53 -1.2 400,249 + DDA3937_RS01800 0.53 -0.6 400,249 + DDA3937_RS01800 0.53 -0.2 400,250 - DDA3937_RS01800 0.54 -0.4 400,250 - DDA3937_RS01800 0.54 -0.3 400,250 - DDA3937_RS01800 0.54 -1.0 400,250 - DDA3937_RS01800 0.54 -1.4 400,250 - +0.8
Or see this region's nucleotide sequence