Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00885

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00875 and DDA3937_RS00880 are separated by 13 nucleotidesDDA3937_RS00880 and DDA3937_RS00885 are separated by 109 nucleotidesDDA3937_RS00885 and DDA3937_RS00890 are separated by 131 nucleotides DDA3937_RS00875: DDA3937_RS00875 - DUF805 domain-containing protein, at 202,504 to 202,929 _RS00875 DDA3937_RS00880: DDA3937_RS00880 - ferredoxin--NADP(+) reductase, at 202,943 to 203,689 _RS00880 DDA3937_RS00885: DDA3937_RS00885 - class II fructose-bisphosphatase, at 203,799 to 204,809 _RS00885 DDA3937_RS00890: DDA3937_RS00890 - glycerol kinase GlpK, at 204,941 to 206,452 _RS00890 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 202.869 kb on + strand, within DDA3937_RS00875at 202.869 kb on + strand, within DDA3937_RS00875at 202.945 kb on - strandat 202.967 kb on - strandat 203.328 kb on + strandat 203.329 kb on - strand, within DDA3937_RS00880at 203.529 kb on + strand, within DDA3937_RS00880at 203.633 kb on + strandat 203.663 kb on - strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.695 kb on + strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.696 kb on - strandat 203.748 kb on + strandat 203.749 kb on - strandat 203.749 kb on - strandat 203.842 kb on + strandat 203.843 kb on - strandat 203.843 kb on - strandat 204.194 kb on - strand, within DDA3937_RS00885at 204.274 kb on - strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.454 kb on + strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.455 kb on - strand, within DDA3937_RS00885at 204.595 kb on - strand, within DDA3937_RS00885at 204.610 kb on + strand, within DDA3937_RS00885at 204.610 kb on + strand, within DDA3937_RS00885at 204.610 kb on + strand, within DDA3937_RS00885at 204.611 kb on - strand, within DDA3937_RS00885at 204.611 kb on - strand, within DDA3937_RS00885at 204.611 kb on - strand, within DDA3937_RS00885at 204.611 kb on - strand, within DDA3937_RS00885at 204.726 kb on - strandat 204.795 kb on + strandat 204.795 kb on + strandat 204.795 kb on + strandat 204.796 kb on - strandat 204.813 kb on + strandat 204.813 kb on + strandat 204.834 kb on - strandat 204.834 kb on - strandat 204.841 kb on + strandat 204.841 kb on + strandat 204.842 kb on - strandat 204.842 kb on - strandat 204.853 kb on + strandat 204.853 kb on + strandat 204.853 kb on + strandat 204.854 kb on - strandat 204.858 kb on + strandat 204.859 kb on - strandat 204.859 kb on - strandat 204.869 kb on + strandat 205.291 kb on - strand, within DDA3937_RS00890at 205.372 kb on - strand, within DDA3937_RS00890at 205.384 kb on - strand, within DDA3937_RS00890at 205.384 kb on - strand, within DDA3937_RS00890at 205.384 kb on - strand, within DDA3937_RS00890at 205.419 kb on + strand, within DDA3937_RS00890at 205.419 kb on + strand, within DDA3937_RS00890at 205.419 kb on + strand, within DDA3937_RS00890at 205.419 kb on + strand, within DDA3937_RS00890at 205.419 kb on + strand, within DDA3937_RS00890at 205.420 kb on - strand, within DDA3937_RS00890at 205.420 kb on - strand, within DDA3937_RS00890at 205.420 kb on - strand, within DDA3937_RS00890at 205.420 kb on - strand, within DDA3937_RS00890at 205.420 kb on - strand, within DDA3937_RS00890at 205.455 kb on + strand, within DDA3937_RS00890at 205.455 kb on + strand, within DDA3937_RS00890at 205.548 kb on + strandat 205.548 kb on + strand, within DDA3937_RS00890at 205.548 kb on + strand, within DDA3937_RS00890at 205.549 kb on - strand, within DDA3937_RS00890at 205.549 kb on - strand, within DDA3937_RS00890at 205.549 kb on - strand, within DDA3937_RS00890at 205.549 kb on - strand, within DDA3937_RS00890at 205.607 kb on + strand, within DDA3937_RS00890at 205.653 kb on + strand, within DDA3937_RS00890at 205.653 kb on + strand, within DDA3937_RS00890at 205.653 kb on + strand, within DDA3937_RS00890at 205.653 kb on + strand, within DDA3937_RS00890at 205.653 kb on + strand, within DDA3937_RS00890at 205.654 kb on - strand, within DDA3937_RS00890at 205.654 kb on - strand, within DDA3937_RS00890at 205.654 kb on - strand, within DDA3937_RS00890at 205.654 kb on - strand, within DDA3937_RS00890at 205.654 kb on - strand, within DDA3937_RS00890at 205.654 kb on - strand, within DDA3937_RS00890at 205.695 kb on + strand, within DDA3937_RS00890at 205.696 kb on - strand, within DDA3937_RS00890

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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202,869 + DDA3937_RS00875 0.86 -1.0
202,869 + DDA3937_RS00875 0.86 +1.2
202,945 - -0.7
202,967 - +0.5
203,328 + +6.4
203,329 - DDA3937_RS00880 0.52 +0.8
203,529 + DDA3937_RS00880 0.78 -1.2
203,633 + +1.5
203,663 - -1.3
203,695 + +0.2
203,695 + -0.8
203,695 + -0.2
203,695 + -0.2
203,695 + -1.6
203,695 + -0.5
203,696 - -0.3
203,696 - -0.9
203,696 - +0.5
203,696 - +0.3
203,696 - -1.5
203,696 - -1.0
203,748 + -1.3
203,749 - +0.1
203,749 - -0.5
203,842 + +0.3
203,843 - -2.2
203,843 - +3.3
204,194 - DDA3937_RS00885 0.39 +1.2
204,274 - DDA3937_RS00885 0.47 -1.5
204,454 + DDA3937_RS00885 0.65 +6.0
204,454 + DDA3937_RS00885 0.65 -1.8
204,454 + DDA3937_RS00885 0.65 -0.8
204,454 + DDA3937_RS00885 0.65 -0.1
204,454 + DDA3937_RS00885 0.65 -2.3
204,454 + DDA3937_RS00885 0.65 -0.5
204,454 + DDA3937_RS00885 0.65 +4.0
204,454 + DDA3937_RS00885 0.65 +1.1
204,454 + DDA3937_RS00885 0.65 +1.1
204,455 - DDA3937_RS00885 0.65 +0.8
204,455 - DDA3937_RS00885 0.65 +2.7
204,455 - DDA3937_RS00885 0.65 -0.0
204,455 - DDA3937_RS00885 0.65 +0.3
204,455 - DDA3937_RS00885 0.65 -1.4
204,455 - DDA3937_RS00885 0.65 -0.5
204,455 - DDA3937_RS00885 0.65 +1.3
204,455 - DDA3937_RS00885 0.65 -1.0
204,455 - DDA3937_RS00885 0.65 -1.2
204,455 - DDA3937_RS00885 0.65 -0.5
204,595 - DDA3937_RS00885 0.79 -0.8
204,610 + DDA3937_RS00885 0.80 +0.1
204,610 + DDA3937_RS00885 0.80 -1.1
204,610 + DDA3937_RS00885 0.80 -0.7
204,611 - DDA3937_RS00885 0.80 -0.2
204,611 - DDA3937_RS00885 0.80 -2.0
204,611 - DDA3937_RS00885 0.80 -0.3
204,611 - DDA3937_RS00885 0.80 +0.9
204,726 - -1.2
204,795 + -1.8
204,795 + -1.3
204,795 + -1.9
204,796 - -0.1
204,813 + -0.1
204,813 + +0.5
204,834 - -0.1
204,834 - +1.1
204,841 + +0.4
204,841 + -0.6
204,842 - -0.8
204,842 - -0.8
204,853 + -1.0
204,853 + +0.9
204,853 + -0.5
204,854 - -0.3
204,858 + -0.8
204,859 - +0.2
204,859 - -0.3
204,869 + -0.4
205,291 - DDA3937_RS00890 0.23 +0.9
205,372 - DDA3937_RS00890 0.29 -1.5
205,384 - DDA3937_RS00890 0.29 -2.0
205,384 - DDA3937_RS00890 0.29 +4.5
205,384 - DDA3937_RS00890 0.29 -1.3
205,419 + DDA3937_RS00890 0.32 -0.8
205,419 + DDA3937_RS00890 0.32 -1.2
205,419 + DDA3937_RS00890 0.32 +0.2
205,419 + DDA3937_RS00890 0.32 -2.0
205,419 + DDA3937_RS00890 0.32 +0.7
205,420 - DDA3937_RS00890 0.32 +1.0
205,420 - DDA3937_RS00890 0.32 -0.5
205,420 - DDA3937_RS00890 0.32 +0.3
205,420 - DDA3937_RS00890 0.32 -0.9
205,420 - DDA3937_RS00890 0.32 +0.6
205,455 + DDA3937_RS00890 0.34 +1.4
205,455 + DDA3937_RS00890 0.34 -1.2
205,548 + +1.8
205,548 + DDA3937_RS00890 0.40 -0.0
205,548 + DDA3937_RS00890 0.40 -0.7
205,549 - DDA3937_RS00890 0.40 +0.4
205,549 - DDA3937_RS00890 0.40 +0.3
205,549 - DDA3937_RS00890 0.40 -1.3
205,549 - DDA3937_RS00890 0.40 +0.2
205,607 + DDA3937_RS00890 0.44 -0.5
205,653 + DDA3937_RS00890 0.47 -0.2
205,653 + DDA3937_RS00890 0.47 -0.2
205,653 + DDA3937_RS00890 0.47 +2.4
205,653 + DDA3937_RS00890 0.47 -0.5
205,653 + DDA3937_RS00890 0.47 +1.8
205,654 - DDA3937_RS00890 0.47 -0.1
205,654 - DDA3937_RS00890 0.47 +0.2
205,654 - DDA3937_RS00890 0.47 -1.1
205,654 - DDA3937_RS00890 0.47 +0.7
205,654 - DDA3937_RS00890 0.47 +0.8
205,654 - DDA3937_RS00890 0.47 -0.2
205,695 + DDA3937_RS00890 0.50 +1.5
205,696 - DDA3937_RS00890 0.50 -0.3

Or see this region's nucleotide sequence