Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00770 and DDA3937_RS00775 are separated by 236 nucleotides DDA3937_RS00775 and DDA3937_RS00780 are separated by 16 nucleotides DDA3937_RS00780 and DDA3937_RS00785 are separated by 210 nucleotides
DDA3937_RS00770: DDA3937_RS00770 - hypothetical protein, at 179,712 to 181,913
_RS00770
DDA3937_RS00775: DDA3937_RS00775 - envelope stress sensor histidine kinase CpxA, at 182,150 to 183,523
_RS00775
DDA3937_RS00780: DDA3937_RS00780 - envelope stress response regulator transcription factor CpxR, at 183,540 to 184,238
_RS00780
DDA3937_RS00785: DDA3937_RS00785 - cell-envelope stress modulator CpxP, at 184,449 to 185,009
_RS00785
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.157 kb on + strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.158 kb on - strand, within DDA3937_RS00770 at 181.159 kb on + strand, within DDA3937_RS00770 at 181.159 kb on + strand, within DDA3937_RS00770 at 181.159 kb on + strand, within DDA3937_RS00770 at 181.160 kb on - strand, within DDA3937_RS00770 at 181.160 kb on - strand, within DDA3937_RS00770 at 181.353 kb on + strand, within DDA3937_RS00770 at 181.354 kb on - strand, within DDA3937_RS00770 at 181.354 kb on - strand, within DDA3937_RS00770 at 181.354 kb on - strand, within DDA3937_RS00770 at 181.374 kb on + strand, within DDA3937_RS00770 at 181.375 kb on - strand, within DDA3937_RS00770 at 181.632 kb on - strand, within DDA3937_RS00770 at 181.632 kb on - strand, within DDA3937_RS00770 at 181.730 kb on + strand at 181.731 kb on - strand at 181.736 kb on + strand at 181.737 kb on - strand at 181.763 kb on + strand at 181.792 kb on + strand at 181.837 kb on - strand at 181.855 kb on + strand at 181.855 kb on + strand at 181.855 kb on + strand at 181.856 kb on - strand at 181.869 kb on + strand at 181.896 kb on + strand at 181.896 kb on + strand at 181.902 kb on + strand at 181.903 kb on - strand at 181.954 kb on + strand at 181.954 kb on + strand at 182.070 kb on - strand at 182.151 kb on + strand at 182.163 kb on + strand at 182.164 kb on - strand at 182.164 kb on - strand at 182.164 kb on - strand at 182.164 kb on - strand at 182.600 kb on + strand at 182.600 kb on + strand, within DDA3937_RS00775 at 182.774 kb on + strand, within DDA3937_RS00775 at 182.774 kb on + strand at 182.774 kb on + strand, within DDA3937_RS00775 at 183.055 kb on + strand, within DDA3937_RS00775 at 183.056 kb on - strand, within DDA3937_RS00775 at 183.056 kb on - strand at 183.093 kb on + strand, within DDA3937_RS00775 at 183.094 kb on - strand at 183.103 kb on - strand, within DDA3937_RS00775 at 183.205 kb on + strand, within DDA3937_RS00775 at 183.242 kb on + strand, within DDA3937_RS00775 at 183.523 kb on + strand at 183.524 kb on - strand at 183.638 kb on + strand, within DDA3937_RS00780 at 184.008 kb on - strand, within DDA3937_RS00780 at 184.248 kb on - strand at 184.248 kb on - strand at 184.248 kb on - strand at 184.248 kb on - strand at 184.265 kb on - strand at 184.271 kb on + strand at 184.271 kb on + strand at 184.271 kb on + strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.272 kb on - strand at 184.295 kb on + strand at 184.299 kb on + strand at 184.339 kb on + strand at 184.340 kb on - strand at 184.344 kb on + strand at 184.399 kb on + strand at 184.399 kb on + strand at 184.400 kb on - strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.412 kb on + strand at 184.420 kb on + strand at 184.420 kb on + strand at 184.421 kb on - strand at 184.421 kb on - strand at 184.425 kb on + strand at 184.425 kb on + strand at 184.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 181,157 + DDA3937_RS00770 0.66 +1.1 181,157 + DDA3937_RS00770 0.66 +0.1 181,157 + DDA3937_RS00770 0.66 -0.5 181,157 + DDA3937_RS00770 0.66 -1.7 181,157 + DDA3937_RS00770 0.66 -2.0 181,157 + DDA3937_RS00770 0.66 +0.5 181,157 + DDA3937_RS00770 0.66 -1.5 181,157 + DDA3937_RS00770 0.66 -0.2 181,158 - DDA3937_RS00770 0.66 -0.6 181,158 - DDA3937_RS00770 0.66 -1.9 181,158 - DDA3937_RS00770 0.66 +0.2 181,158 - DDA3937_RS00770 0.66 -2.1 181,158 - DDA3937_RS00770 0.66 +0.6 181,158 - DDA3937_RS00770 0.66 -0.3 181,158 - DDA3937_RS00770 0.66 -0.5 181,158 - DDA3937_RS00770 0.66 +0.4 181,158 - DDA3937_RS00770 0.66 -0.5 181,159 + DDA3937_RS00770 0.66 +2.0 181,159 + DDA3937_RS00770 0.66 -0.7 181,159 + DDA3937_RS00770 0.66 +1.7 181,160 - DDA3937_RS00770 0.66 -0.0 181,160 - DDA3937_RS00770 0.66 +1.4 181,353 + DDA3937_RS00770 0.75 +0.2 181,354 - DDA3937_RS00770 0.75 -0.3 181,354 - DDA3937_RS00770 0.75 -0.0 181,354 - DDA3937_RS00770 0.75 -0.7 181,374 + DDA3937_RS00770 0.75 -0.4 181,375 - DDA3937_RS00770 0.76 -1.0 181,632 - DDA3937_RS00770 0.87 -0.5 181,632 - DDA3937_RS00770 0.87 +1.6 181,730 + +1.1 181,731 - +0.6 181,736 + +0.0 181,737 - -0.3 181,763 + -0.3 181,792 + +0.2 181,837 - -0.2 181,855 + +0.3 181,855 + -2.0 181,855 + -0.5 181,856 - -0.5 181,869 + +0.5 181,896 + +0.8 181,896 + +0.6 181,902 + +0.6 181,903 - +0.5 181,954 + -3.1 181,954 + -0.1 182,070 - -0.5 182,151 + -0.5 182,163 + -0.3 182,164 - -0.7 182,164 - -0.5 182,164 - -1.3 182,164 - +0.8 182,600 + +0.8 182,600 + DDA3937_RS00775 0.33 +0.1 182,774 + DDA3937_RS00775 0.45 -0.4 182,774 + -0.2 182,774 + DDA3937_RS00775 0.45 -1.0 183,055 + DDA3937_RS00775 0.66 -1.7 183,056 - DDA3937_RS00775 0.66 -2.1 183,056 - +1.8 183,093 + DDA3937_RS00775 0.69 -1.0 183,094 - -0.5 183,103 - DDA3937_RS00775 0.69 +0.3 183,205 + DDA3937_RS00775 0.77 -0.2 183,242 + DDA3937_RS00775 0.79 -0.5 183,523 + -0.8 183,524 - -0.6 183,638 + DDA3937_RS00780 0.14 -1.2 184,008 - DDA3937_RS00780 0.67 -1.7 184,248 - -1.8 184,248 - +1.1 184,248 - -0.6 184,248 - -1.1 184,265 - -0.2 184,271 + +0.3 184,271 + -2.1 184,271 + -0.6 184,272 - +0.3 184,272 - +0.9 184,272 - +0.8 184,272 - -0.1 184,272 - -2.2 184,272 - +0.8 184,272 - +0.1 184,272 - +0.8 184,295 + -0.4 184,299 + +0.8 184,339 + +2.8 184,340 - +1.8 184,344 + -0.5 184,399 + -0.6 184,399 + -0.6 184,400 - -0.5 184,412 + -0.9 184,412 + -1.6 184,412 + -0.5 184,412 + +0.5 184,420 + +0.9 184,420 + +2.6 184,421 - +0.0 184,421 - -2.0 184,425 + -1.2 184,425 + -0.2 184,425 + +0.7
Or see this region's nucleotide sequence