Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00740

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS00735 and DDA3937_RS00740 overlap by 4 nucleotidesDDA3937_RS00740 and DDA3937_RS00745 are separated by 205 nucleotides DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388 _RS00735 DDA3937_RS00740: DDA3937_RS00740 - glycerophosphodiester phosphodiesterase, at 175,385 to 176,134 _RS00740 DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296 _RS00745 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2 3at 174.443 kb on + strand, within DDA3937_RS00735at 174.443 kb on + strand, within DDA3937_RS00735at 174.443 kb on + strand, within DDA3937_RS00735at 174.444 kb on - strand, within DDA3937_RS00735at 174.444 kb on - strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strandat 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.565 kb on - strand, within DDA3937_RS00735at 174.565 kb on - strand, within DDA3937_RS00735at 174.592 kb on - strand, within DDA3937_RS00735at 174.606 kb on + strand, within DDA3937_RS00735at 174.879 kb on + strand, within DDA3937_RS00735at 174.879 kb on + strand, within DDA3937_RS00735at 174.880 kb on - strand, within DDA3937_RS00735at 174.978 kb on + strand, within DDA3937_RS00735at 174.979 kb on - strand, within DDA3937_RS00735at 175.349 kb on + strandat 175.349 kb on + strandat 175.350 kb on - strandat 175.350 kb on - strandat 175.350 kb on - strandat 175.351 kb on + strandat 175.351 kb on + strandat 175.351 kb on + strandat 175.352 kb on - strandat 175.352 kb on - strandat 175.352 kb on - strandat 175.706 kb on + strand, within DDA3937_RS00740at 175.706 kb on + strand, within DDA3937_RS00740at 175.723 kb on + strand, within DDA3937_RS00740at 175.724 kb on - strand, within DDA3937_RS00740at 175.960 kb on + strand, within DDA3937_RS00740at 175.960 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.028 kb on - strand, within DDA3937_RS00740at 176.029 kb on + strand, within DDA3937_RS00740at 176.030 kb on - strand, within DDA3937_RS00740at 176.030 kb on - strand, within DDA3937_RS00740at 176.122 kb on + strandat 176.123 kb on - strandat 176.138 kb on + strandat 176.138 kb on + strandat 176.138 kb on + strandat 176.144 kb on + strandat 176.144 kb on + strandat 176.148 kb on + strandat 176.235 kb on - strandat 176.329 kb on - strandat 176.510 kb on + strand, within DDA3937_RS00745at 176.511 kb on - strand, within DDA3937_RS00745at 176.511 kb on - strand, within DDA3937_RS00745at 176.582 kb on + strand, within DDA3937_RS00745at 176.798 kb on - strand, within DDA3937_RS00745at 176.901 kb on + strand, within DDA3937_RS00745at 176.902 kb on - strand, within DDA3937_RS00745at 177.018 kb on - strand, within DDA3937_RS00745at 177.018 kb on - strand, within DDA3937_RS00745at 177.048 kb on - strand, within DDA3937_RS00745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
174,443 + DDA3937_RS00735 0.12 +0.4
174,443 + DDA3937_RS00735 0.12 -0.6
174,443 + DDA3937_RS00735 0.12 +0.8
174,444 - DDA3937_RS00735 0.12 +0.6
174,444 - DDA3937_RS00735 0.12 +0.2
174,495 + DDA3937_RS00735 0.17 -1.1
174,495 + +0.3
174,495 + DDA3937_RS00735 0.17 -1.4
174,495 + DDA3937_RS00735 0.17 -1.5
174,495 + DDA3937_RS00735 0.17 -0.7
174,495 + DDA3937_RS00735 0.17 +0.8
174,495 + DDA3937_RS00735 0.17 -0.4
174,495 + DDA3937_RS00735 0.17 +0.3
174,495 + DDA3937_RS00735 0.17 -0.4
174,495 + DDA3937_RS00735 0.17 -1.3
174,495 + DDA3937_RS00735 0.17 -1.5
174,495 + DDA3937_RS00735 0.17 -1.2
174,495 + DDA3937_RS00735 0.17 -0.3
174,495 + DDA3937_RS00735 0.17 +0.8
174,495 + DDA3937_RS00735 0.17 -1.2
174,495 + DDA3937_RS00735 0.17 -0.4
174,495 + DDA3937_RS00735 0.17 +0.3
174,495 + DDA3937_RS00735 0.17 +0.8
174,495 + DDA3937_RS00735 0.17 -1.1
174,495 + DDA3937_RS00735 0.17 -0.7
174,495 + DDA3937_RS00735 0.17 +0.0
174,495 + DDA3937_RS00735 0.17 +0.3
174,496 - DDA3937_RS00735 0.17 +0.3
174,496 - DDA3937_RS00735 0.17 +0.3
174,496 - DDA3937_RS00735 0.17 -1.9
174,496 - DDA3937_RS00735 0.17 -1.8
174,496 - DDA3937_RS00735 0.17 -0.6
174,496 - DDA3937_RS00735 0.17 -0.2
174,496 - DDA3937_RS00735 0.17 -0.9
174,496 - DDA3937_RS00735 0.17 +0.7
174,496 - DDA3937_RS00735 0.17 +0.6
174,496 - DDA3937_RS00735 0.17 -0.7
174,496 - DDA3937_RS00735 0.17 -1.7
174,496 - DDA3937_RS00735 0.17 -0.3
174,496 - DDA3937_RS00735 0.17 +0.0
174,565 - DDA3937_RS00735 0.23 -0.6
174,565 - DDA3937_RS00735 0.23 -0.7
174,592 - DDA3937_RS00735 0.26 +0.1
174,606 + DDA3937_RS00735 0.27 -1.0
174,879 + DDA3937_RS00735 0.53 -2.2
174,879 + DDA3937_RS00735 0.53 -0.5
174,880 - DDA3937_RS00735 0.53 +0.5
174,978 + DDA3937_RS00735 0.62 -0.2
174,979 - DDA3937_RS00735 0.62 +3.0
175,349 + -0.3
175,349 + -1.9
175,350 - +0.0
175,350 - -0.2
175,350 - -1.0
175,351 + -0.4
175,351 + +0.4
175,351 + +0.7
175,352 - -0.8
175,352 - +0.6
175,352 - -0.1
175,706 + DDA3937_RS00740 0.43 -1.0
175,706 + DDA3937_RS00740 0.43 -0.4
175,723 + DDA3937_RS00740 0.45 -1.2
175,724 - DDA3937_RS00740 0.45 -1.1
175,960 + DDA3937_RS00740 0.77 +2.3
175,960 + DDA3937_RS00740 0.77 -0.9
176,027 + DDA3937_RS00740 0.86 -1.6
176,027 + DDA3937_RS00740 0.86 +0.1
176,027 + DDA3937_RS00740 0.86 +3.0
176,027 + DDA3937_RS00740 0.86 +1.1
176,028 - DDA3937_RS00740 0.86 +0.1
176,029 + DDA3937_RS00740 0.86 -1.5
176,030 - DDA3937_RS00740 0.86 -0.5
176,030 - DDA3937_RS00740 0.86 -1.0
176,122 + +0.4
176,123 - +0.7
176,138 + -0.5
176,138 + -2.1
176,138 + -0.3
176,144 + -0.5
176,144 + -0.6
176,148 + -0.1
176,235 - -1.2
176,329 - -0.4
176,510 + DDA3937_RS00745 0.18 -0.2
176,511 - DDA3937_RS00745 0.18 -1.9
176,511 - DDA3937_RS00745 0.18 -0.1
176,582 + DDA3937_RS00745 0.25 +0.7
176,798 - DDA3937_RS00745 0.48 -1.2
176,901 + DDA3937_RS00745 0.59 +0.6
176,902 - DDA3937_RS00745 0.59 -1.3
177,018 - DDA3937_RS00745 0.71 +0.3
177,018 - DDA3937_RS00745 0.71 -0.4
177,048 - DDA3937_RS00745 0.74 -0.5

Or see this region's nucleotide sequence