Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00695 and DDA3937_RS00700 are separated by 98 nucleotides DDA3937_RS00700 and DDA3937_RS00705 are separated by 445 nucleotides
DDA3937_RS00695: DDA3937_RS00695 - hypothetical protein, at 160,727 to 161,644
_RS00695
DDA3937_RS00700: DDA3937_RS00700 - MCP four helix bundle domain-containing protein, at 161,743 to 163,362
_RS00700
DDA3937_RS00705: DDA3937_RS00705 - MCP four helix bundle domain-containing protein, at 163,808 to 165,436
_RS00705
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 160.765 kb on + strand at 160.765 kb on + strand at 160.894 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.925 kb on - strand, within DDA3937_RS00695 at 160.946 kb on - strand, within DDA3937_RS00695 at 161.049 kb on + strand, within DDA3937_RS00695 at 161.371 kb on + strand, within DDA3937_RS00695 at 161.527 kb on + strand, within DDA3937_RS00695 at 161.617 kb on + strand at 161.726 kb on - strand at 161.739 kb on + strand at 161.739 kb on + strand at 161.740 kb on - strand at 161.815 kb on + strand at 162.399 kb on + strand, within DDA3937_RS00700 at 162.678 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.690 kb on - strand, within DDA3937_RS00700 at 162.690 kb on - strand, within DDA3937_RS00700 at 162.690 kb on - strand, within DDA3937_RS00700 at 162.757 kb on + strand, within DDA3937_RS00700 at 162.768 kb on + strand, within DDA3937_RS00700 at 162.800 kb on + strand, within DDA3937_RS00700 at 163.005 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.067 kb on - strand, within DDA3937_RS00700 at 163.067 kb on - strand, within DDA3937_RS00700 at 163.078 kb on - strand, within DDA3937_RS00700 at 163.185 kb on + strand, within DDA3937_RS00700 at 163.210 kb on - strand at 163.232 kb on + strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.242 kb on + strand at 163.259 kb on - strand at 163.287 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.310 kb on - strand at 163.310 kb on - strand at 163.310 kb on - strand at 163.311 kb on + strand at 163.311 kb on + strand at 163.312 kb on - strand at 163.312 kb on - strand at 163.344 kb on + strand at 163.352 kb on - strand at 163.363 kb on + strand at 163.363 kb on + strand at 163.372 kb on + strand at 163.372 kb on + strand at 163.378 kb on - strand at 163.378 kb on - strand at 163.400 kb on - strand at 163.434 kb on + strand at 163.434 kb on + strand at 163.435 kb on - strand at 163.435 kb on - strand at 163.435 kb on - strand at 163.482 kb on - strand at 163.482 kb on - strand at 163.535 kb on + strand at 163.535 kb on + strand at 163.539 kb on + strand at 163.558 kb on - strand at 163.686 kb on + strand at 163.686 kb on + strand at 163.731 kb on + strand at 163.731 kb on + strand at 163.732 kb on - strand at 163.732 kb on - strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.736 kb on - strand at 163.744 kb on + strand at 163.792 kb on + strand at 163.793 kb on - strand at 163.795 kb on - strand at 163.810 kb on - strand at 163.810 kb on - strand at 163.832 kb on + strand at 164.113 kb on + strand, within DDA3937_RS00705 at 164.113 kb on + strand, within DDA3937_RS00705 at 164.113 kb on + strand, within DDA3937_RS00705 at 164.344 kb on + strand, within DDA3937_RS00705 at 164.345 kb on - strand, within DDA3937_RS00705
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 160,765 + -0.0 160,765 + -0.2 160,894 + DDA3937_RS00695 0.18 +1.5 160,924 + DDA3937_RS00695 0.21 -0.7 160,924 + DDA3937_RS00695 0.21 -0.5 160,924 + DDA3937_RS00695 0.21 -0.3 160,924 + DDA3937_RS00695 0.21 -1.3 160,925 - DDA3937_RS00695 0.22 -2.2 160,946 - DDA3937_RS00695 0.24 +1.4 161,049 + DDA3937_RS00695 0.35 -2.5 161,371 + DDA3937_RS00695 0.70 -0.7 161,527 + DDA3937_RS00695 0.87 +0.2 161,617 + -0.8 161,726 - -0.6 161,739 + -1.9 161,739 + -0.9 161,740 - -0.8 161,815 + -3.4 162,399 + DDA3937_RS00700 0.40 +1.8 162,678 + DDA3937_RS00700 0.58 +0.2 162,689 + DDA3937_RS00700 0.58 +1.4 162,689 + DDA3937_RS00700 0.58 +0.8 162,689 + DDA3937_RS00700 0.58 -1.6 162,689 + DDA3937_RS00700 0.58 -0.5 162,690 - DDA3937_RS00700 0.58 +1.5 162,690 - DDA3937_RS00700 0.58 +0.8 162,690 - DDA3937_RS00700 0.58 +9.2 162,757 + DDA3937_RS00700 0.63 +0.4 162,768 + DDA3937_RS00700 0.63 -0.4 162,800 + DDA3937_RS00700 0.65 +1.0 163,005 + DDA3937_RS00700 0.78 -2.7 163,066 + DDA3937_RS00700 0.82 -1.2 163,066 + DDA3937_RS00700 0.82 -0.5 163,066 + DDA3937_RS00700 0.82 -1.6 163,067 - DDA3937_RS00700 0.82 -1.3 163,067 - DDA3937_RS00700 0.82 +1.8 163,078 - DDA3937_RS00700 0.82 +1.9 163,185 + DDA3937_RS00700 0.89 -0.2 163,210 - +1.5 163,232 + -0.2 163,233 - -0.6 163,233 - +0.3 163,233 - -3.2 163,233 - -0.4 163,242 + +0.9 163,259 - -1.7 163,287 + -0.7 163,309 + -2.1 163,309 + -2.3 163,309 + -0.5 163,309 + +1.5 163,310 - +3.5 163,310 - -0.7 163,310 - +1.0 163,311 + +0.9 163,311 + -1.6 163,312 - -1.3 163,312 - +1.7 163,344 + +0.5 163,352 - -0.4 163,363 + -0.5 163,363 + +0.8 163,372 + -1.5 163,372 + -0.3 163,378 - +0.0 163,378 - -0.5 163,400 - +1.6 163,434 + +1.2 163,434 + -0.2 163,435 - +0.1 163,435 - -1.3 163,435 - -1.6 163,482 - +3.2 163,482 - +0.1 163,535 + -1.1 163,535 + -2.8 163,539 + +1.8 163,558 - -2.0 163,686 + -0.2 163,686 + -0.7 163,731 + -0.2 163,731 + -1.0 163,732 - +1.1 163,732 - +0.4 163,733 + -0.4 163,733 + -0.2 163,733 + -0.2 163,733 + +0.1 163,733 + -0.7 163,734 - -0.3 163,734 - +1.4 163,734 - +1.4 163,734 - +2.4 163,734 - +6.8 163,734 - +0.6 163,734 - +0.4 163,734 - +0.7 163,734 - +0.8 163,734 - -0.0 163,735 + -3.1 163,735 + +0.1 163,735 + +0.0 163,735 + -0.8 163,735 + -0.4 163,736 - +0.4 163,744 + +0.5 163,792 + +0.5 163,793 - -0.0 163,795 - +0.1 163,810 - +1.8 163,810 - +1.0 163,832 + -0.2 164,113 + DDA3937_RS00705 0.19 +1.0 164,113 + DDA3937_RS00705 0.19 +0.3 164,113 + DDA3937_RS00705 0.19 -0.5 164,344 + DDA3937_RS00705 0.33 -0.7 164,345 - DDA3937_RS00705 0.33 -1.2
Or see this region's nucleotide sequence