Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
143,497	+				-0.8
143,497	+				+0.8
143,497	+				+0.0
143,497	+				-0.5
143,497	+				+0.1
143,497	+				-1.3
143,497	+				+2.3
143,497	+				-0.5
143,497	+				+2.4
143,497	+				-0.5
143,498	-				-0.4
143,498	-				-0.9
143,498	-				-1.8
143,498	-				-0.5
143,498	-				-1.5
143,553	-				-1.1
143,554	+				+3.1
143,554	+				-0.8
143,554	+				-0.7
143,554	+				+0.2
143,554	+				+0.1
143,554	+				+1.0
143,555	-				+0.3
143,555	-				-0.9
143,555	-				+0.1
143,555	-				-1.2
143,563	+				-1.9
143,564	-				-0.4
143,564	-				-0.7
143,564	-				-1.2
143,564	-				+1.4
143,592	+				-0.2
143,593	-				-0.4
143,685	+				+0.8
143,685	+				+0.3
143,685	+				-0.2
143,685	+				-0.6
143,685	+				-1.8
143,685	+				-1.4
143,686	-				-1.7
143,686	-				+0.3
143,686	-				-0.2
143,686	-				+0.5
143,686	-				-0.5
143,686	-				-2.1
143,686	-				-1.5
143,689	+				+0.2
143,689	+				-0.2
143,689	+				+1.2
143,689	+				-0.2
143,689	+				-0.7
143,689	+				-0.9
143,689	+				-0.6
143,689	+				-1.3
143,689	+				-1.0
143,689	+				-1.7
143,689	+				+1.4
143,690	-				+0.8
143,690	-				+0.8
143,690	-				+0.3
143,690	-				-0.3
143,690	-				+0.8
143,690	-				-1.2
143,690	-				-0.2
143,690	-				-0.9
143,690	-				-0.2
143,690	-				-0.1
143,690	-				-0.2
143,690	-				-0.6
143,691	+				-0.2
143,691	+				-0.2
143,691	+				-0.5
143,691	+				-0.1
143,691	+				+0.5
143,691	+				-0.3
143,691	+				+0.3
143,692	-				-0.3
143,692	-				-0.7
143,692	-				-0.7
143,693	+				-0.8
143,693	+				-0.1
143,693	+				-1.2
143,693	+				-2.4
143,693	+				-0.7
143,693	+				-0.4
143,693	+				+0.4
143,694	-				-2.0
143,694	-				-2.3
143,694	-				+0.1
143,694	-				+0.5
143,694	-				-1.3
143,694	-				-0.4
143,723	-				-0.9
143,723	-				-1.5
143,723	-				+0.3
143,772	+				-1.3
143,772	+				-0.4
143,773	-				-1.2
143,781	+				-0.6
143,781	+				-1.6
143,782	-				+0.2
143,782	-				+0.8
143,782	-				+0.6
143,783	+				-0.6
143,783	+				+1.9
143,783	+				-0.2
143,783	+				-0.5
143,783	+				+0.6
143,783	+				+1.5
143,783	+				-0.3
143,783	+				-1.2
143,783	+				-0.1
143,783	+				-0.5
143,783	+				-0.8
143,784	-				+1.5
143,784	-				+0.2
143,784	-				-0.2
143,784	-				-1.1
143,784	-				-2.5
143,784	-				-2.3
143,784	-				+0.8
143,784	-				+3.4
143,818	-				-0.4
143,861	+				+0.3
143,861	+				-1.0
143,884	+				-0.6
143,885	-				-0.4
143,930	+				+1.1
143,930	+				-0.7
143,931	-				-0.2
143,931	-				-0.7
143,991	-				+0.3
144,069	-				-2.0
144,280	+		DDA3937_RS00610	0.70	+1.5
144,404	+				+1.8
144,404	+				-0.6
144,404	+				-1.1
144,405	-				+0.0
144,415	+				+1.2
144,415	+				+0.7
144,415	+				-1.5
144,415	+				-1.4
144,415	+				-1.2
144,415	+				-0.3
144,415	+				-0.8
144,416	-				-2.0
144,416	-				+0.6
144,416	-				-2.4
144,416	-				-1.3
144,416	-				-1.6
144,416	-				+0.5
144,416	-				+0.4
144,416	-				-1.0
144,418	+				-0.0
144,418	+				+0.2
144,418	+				-0.0
144,418	+				+0.4
144,418	+				-0.7
144,418	+				-1.0
144,418	+				+0.5
144,418	+				+2.4
144,418	+				+0.6
144,418	+				+0.3
144,418	+				-0.6
144,418	+				-1.4
144,418	+				+0.6
144,419	-				+0.7
144,419	-				+0.3
144,419	-				-0.6
144,419	-				-2.2
144,419	-				+0.8
144,419	-				-0.8
144,419	-				-0.7
144,419	-				-0.8
144,420	+				-0.5
144,420	+				-1.2
144,420	+				+0.3
144,420	+				-0.9
144,420	+				-2.6
144,421	-				+0.1
144,421	-				-0.1
144,421	-				-0.8
144,421	-				-1.2
144,421	-				-0.1
144,421	-				-0.8
144,421	-				+0.5
144,422	+				-0.9
144,422	+				+0.7
144,422	+				-2.2
144,423	-				-0.7
144,423	-				+0.3
144,423	-				-1.0
144,423	-				-1.7
144,423	-				-1.7
144,423	-				-0.6
144,423	-				+0.0
144,423	-				-1.8
144,433	+				-1.5
144,433	+				-2.1
144,433	+				-0.6
144,433	+				-0.5
144,433	+				+1.2
144,434	-				+0.1
144,434	-				+0.1
144,434	-				-0.5
144,434	-				+0.5
144,436	+				-1.5
144,436	+				-1.3
144,437	-				-1.1
144,437	-				-0.7
144,437	-				-0.7
144,438	+				-1.6
144,438	+				+0.3
144,438	+				-0.6
144,438	+				-1.5
144,438	+				+0.7
144,438	+				+1.6
144,438	+				+1.0
144,438	+				+0.2
144,438	+				+0.4
144,439	-				+1.3
144,439	-				-1.2
144,439	-				-0.3
144,439	-				+0.2
144,439	-				+0.0
144,439	-				+0.3
144,439	-				+1.1
144,442	+				-2.0
144,453	+				-0.1
144,453	+				-1.0
144,453	+				+0.0
144,453	+				-0.0
144,453	+				-0.7
144,453	+				+1.5
144,454	-				+1.8
144,454	-				-0.2
144,454	-				+1.1
144,454	-				-0.8
144,454	-				-1.2
144,456	+				-1.3
144,456	+				-1.6
144,457	-				-0.8
144,479	-				-0.3
144,558	+		DDA3937_RS00615	0.20	-0.1
144,558	+		DDA3937_RS00615	0.20	-0.2
144,570	-				+0.5
144,614	-		DDA3937_RS00615	0.28	+0.1
144,614	-		DDA3937_RS00615	0.28	+0.7
144,794	+		DDA3937_RS00615	0.57	-0.7
144,794	+		DDA3937_RS00615	0.57	+0.3
144,795	-		DDA3937_RS00615	0.57	-0.5
144,795	-		DDA3937_RS00615	0.57	-0.0
144,795	-		DDA3937_RS00615	0.57	-1.2
144,795	-		DDA3937_RS00615	0.57	+0.8
144,795	-		DDA3937_RS00615	0.57	-0.2
144,796	+		DDA3937_RS00615	0.57	-0.8
144,797	-		DDA3937_RS00615	0.57	+0.4
144,797	-		DDA3937_RS00615	0.57	-1.0
144,797	-		DDA3937_RS00615	0.57	-2.1
144,797	-		DDA3937_RS00615	0.57	-1.5
144,797	-		DDA3937_RS00615	0.57	+1.3
144,818	-		DDA3937_RS00615	0.61	-1.2
144,818	-		DDA3937_RS00615	0.61	-1.0
144,960	+				+0.8
144,960	+		DDA3937_RS00615	0.83	+2.2
144,961	-		DDA3937_RS00615	0.83	-0.7
144,974	+		DDA3937_RS00615	0.86	+1.0
144,974	+		DDA3937_RS00615	0.86	+1.0
144,974	+				+1.4
144,975	-		DDA3937_RS00615	0.86	+6.5
144,975	-		DDA3937_RS00615	0.86	+0.0
145,006	+				-0.5
145,007	-				-0.8
145,021	+				-0.4
145,021	+				-2.0
145,021	+				-1.6
145,021	+				-0.9
145,021	+				+0.4
145,021	+				+0.3
145,021	+				+0.0
145,022	-				-1.6
145,022	-				-2.0
145,022	-				-2.0
145,022	-				-1.0
145,064	+				+0.7
145,064	+				+0.1
145,064	+				-2.8
145,064	+				-0.4
145,064	+				-0.4
145,064	+				+2.4
145,064	+				-0.7
145,064	+				+0.0
145,064	+				-0.5
145,064	+				-0.9
145,064	+				-0.8
145,064	+				+0.0
145,064	+				+3.3
145,064	+				-0.9
145,065	-				-1.2
145,065	-				-2.2
145,065	-				+0.7
145,065	-				+0.2
145,065	-				-1.7
145,065	-				-0.9
145,065	-				-1.7
145,065	-				-0.5
145,065	-				-1.3
145,065	-				-0.2
145,065	-				-0.5
145,065	-				-0.4
145,065	-				+1.4
145,065	-				+1.1
145,065	-				+0.3
145,076	-				+0.3
145,132	-				-2.2
145,139	+				+0.7
145,140	-				+2.4
145,171	+				-0.0
145,171	+				-1.1
145,171	+				-1.4
145,171	+				-2.7
145,171	+				+0.1
145,171	+				-0.7
145,172	-				+0.7
145,172	-				-1.4
145,172	-				+0.9
145,172	-				-0.9
145,172	-				-1.4
145,175	+				-0.8
145,175	+				+1.8
145,175	+				+0.8
145,175	+				+0.3
145,175	+				-1.7
145,175	+				-2.7
145,175	+				+1.3
145,175	+				+0.9
145,175	+				-0.2
145,176	-				-1.4
145,176	-				-1.1
145,176	-				-1.5
145,176	-				+0.9
145,177	+				-0.4
145,177	+				-0.8
145,178	-				-1.2
145,266	+				+1.2
145,266	+				+0.7
145,266	+				-0.4
145,266	+				-0.5
145,266	+				-0.7
145,266	+				-0.0
145,267	-				-1.2
145,267	-				+2.8
145,267	-				+0.7
145,267	-				-0.7
145,267	-				-0.4
145,267	-				+0.8
145,267	-				+0.3
145,295	+				+0.5
145,302	-				-0.7
145,333	+				+0.1
145,333	+				-0.3
145,333	+				+0.0
145,334	-				-0.1
145,353	-				+0.4
145,383	+		DDA3937_RS00620	0.14	+0.6
145,390	+		DDA3937_RS00620	0.17	-0.1
145,391	-		DDA3937_RS00620	0.17	-0.4
145,391	-		DDA3937_RS00620	0.17	+0.5
145,391	-		DDA3937_RS00620	0.17	-0.6
145,391	-				+1.4
145,399	+		DDA3937_RS00620	0.19	-0.8
145,399	+		DDA3937_RS00620	0.19	-0.2
145,399	+		DDA3937_RS00620	0.19	-1.5
145,399	+		DDA3937_RS00620	0.19	-0.4
145,399	+		DDA3937_RS00620	0.19	+0.0
145,399	+		DDA3937_RS00620	0.19	-1.0
145,399	+		DDA3937_RS00620	0.19	-2.0
145,399	+		DDA3937_RS00620	0.19	-0.1
145,399	+		DDA3937_RS00620	0.19	-0.2
145,400	-		DDA3937_RS00620	0.20	-0.3
145,400	-		DDA3937_RS00620	0.20	-0.2
145,400	-		DDA3937_RS00620	0.20	+0.5
145,400	-		DDA3937_RS00620	0.20	-0.7
145,400	-		DDA3937_RS00620	0.20	-0.8
145,400	-		DDA3937_RS00620	0.20	+0.7
145,478	+		DDA3937_RS00620	0.43	+0.7
145,479	-		DDA3937_RS00620	0.44	+0.3
145,537	+		DDA3937_RS00620	0.61	+0.4
145,537	+		DDA3937_RS00620	0.61	-0.5
145,537	+		DDA3937_RS00620	0.61	-0.3
145,537	+		DDA3937_RS00620	0.61	-0.1
145,537	+		DDA3937_RS00620	0.61	-0.2
145,537	+		DDA3937_RS00620	0.61	-1.4
145,537	+		DDA3937_RS00620	0.61	+0.1
145,538	-		DDA3937_RS00620	0.62	-1.7
145,538	-		DDA3937_RS00620	0.62	-1.5
145,538	-		DDA3937_RS00620	0.62	+2.7
145,538	-		DDA3937_RS00620	0.62	-0.1
145,538	-		DDA3937_RS00620	0.62	+1.0
145,538	-		DDA3937_RS00620	0.62	+0.3
145,539	+		DDA3937_RS00620	0.62	+0.7
145,539	+		DDA3937_RS00620	0.62	-1.2
145,539	+		DDA3937_RS00620	0.62	-1.0
145,540	-		DDA3937_RS00620	0.62	-0.5
145,564	-		DDA3937_RS00620	0.70	-2.0
145,564	-		DDA3937_RS00620	0.70	+1.8
145,734	+				-0.0
145,780	+		DDA3937_RS00625	0.20	-1.6
145,801	+		DDA3937_RS00625	0.28	-1.2
145,801	+		DDA3937_RS00625	0.28	-2.1
145,801	+		DDA3937_RS00625	0.28	-0.5
145,801	+		DDA3937_RS00625	0.28	-1.9
145,802	-		DDA3937_RS00625	0.28	-1.5
145,802	-		DDA3937_RS00625	0.28	+0.7
145,802	-		DDA3937_RS00625	0.28	-0.0
145,914	+		DDA3937_RS00625	0.68	-0.5
145,914	+		DDA3937_RS00625	0.68	-1.4
145,915	-		DDA3937_RS00625	0.68	-1.2
145,915	-		DDA3937_RS00625	0.68	-1.9
145,966	+		DDA3937_RS00625	0.86	+2.0
146,047	+				-0.2
146,049	+				-1.7
146,049	+				+0.1
146,050	-				+0.5
146,050	-				+0.2
146,050	-				-1.0