Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00275

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00270 and DDA3937_RS00275 are separated by 422 nucleotidesDDA3937_RS00275 and DDA3937_RS00280 overlap by 1 nucleotides DDA3937_RS00270: DDA3937_RS00270 - hypothetical protein, at 64,272 to 65,327 _RS00270 DDA3937_RS00275: DDA3937_RS00275 - GNAT family N-acetyltransferase, at 65,750 to 66,100 _RS00275 DDA3937_RS00280: DDA3937_RS00280 - D-serine ammonia-lyase, at 66,100 to 67,473 _RS00280 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 64.764 kb on + strand, within DDA3937_RS00270at 64.765 kb on - strand, within DDA3937_RS00270at 64.765 kb on - strand, within DDA3937_RS00270at 64.765 kb on - strand, within DDA3937_RS00270at 64.786 kb on - strand, within DDA3937_RS00270at 64.803 kb on - strandat 64.966 kb on - strand, within DDA3937_RS00270at 64.986 kb on + strand, within DDA3937_RS00270at 64.986 kb on + strand, within DDA3937_RS00270at 64.986 kb on + strand, within DDA3937_RS00270at 64.986 kb on + strand, within DDA3937_RS00270at 64.986 kb on + strand, within DDA3937_RS00270at 64.987 kb on - strand, within DDA3937_RS00270at 65.008 kb on + strand, within DDA3937_RS00270at 65.019 kb on + strand, within DDA3937_RS00270at 65.019 kb on + strand, within DDA3937_RS00270at 65.020 kb on - strand, within DDA3937_RS00270at 65.058 kb on + strand, within DDA3937_RS00270at 65.058 kb on + strand, within DDA3937_RS00270at 65.122 kb on - strand, within DDA3937_RS00270at 65.214 kb on - strand, within DDA3937_RS00270at 65.214 kb on - strand, within DDA3937_RS00270at 65.264 kb on + strandat 65.277 kb on + strandat 65.277 kb on + strandat 65.278 kb on - strandat 65.278 kb on - strandat 65.431 kb on + strandat 65.452 kb on - strandat 65.460 kb on - strandat 65.473 kb on + strandat 65.480 kb on - strandat 65.480 kb on - strandat 65.480 kb on - strandat 65.482 kb on - strandat 65.491 kb on - strandat 65.491 kb on - strandat 65.491 kb on - strandat 65.518 kb on - strandat 65.518 kb on - strandat 65.520 kb on + strandat 65.521 kb on - strandat 65.521 kb on - strandat 65.654 kb on - strandat 65.747 kb on + strandat 65.749 kb on + strandat 65.749 kb on + strandat 65.749 kb on + strandat 65.749 kb on + strandat 65.844 kb on + strand, within DDA3937_RS00275at 65.943 kb on + strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 66.006 kb on + strandat 66.007 kb on - strand, within DDA3937_RS00275at 66.007 kb on - strand, within DDA3937_RS00275at 66.007 kb on - strand, within DDA3937_RS00275at 66.082 kb on + strandat 66.115 kb on - strandat 66.198 kb on + strandat 66.198 kb on + strandat 66.199 kb on - strandat 66.199 kb on - strandat 66.199 kb on - strandat 66.380 kb on + strand, within DDA3937_RS00280at 66.381 kb on - strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.384 kb on - strand, within DDA3937_RS00280at 66.406 kb on - strand, within DDA3937_RS00280at 66.512 kb on + strand, within DDA3937_RS00280at 66.512 kb on + strand, within DDA3937_RS00280at 66.634 kb on + strand, within DDA3937_RS00280at 66.635 kb on - strand, within DDA3937_RS00280at 66.635 kb on - strand, within DDA3937_RS00280at 66.638 kb on + strand, within DDA3937_RS00280at 66.638 kb on + strand, within DDA3937_RS00280at 66.639 kb on - strand, within DDA3937_RS00280at 66.639 kb on - strand, within DDA3937_RS00280at 66.639 kb on - strand, within DDA3937_RS00280at 66.757 kb on - strand, within DDA3937_RS00280at 66.816 kb on - strand, within DDA3937_RS00280at 66.827 kb on + strand, within DDA3937_RS00280at 67.080 kb on - strand, within DDA3937_RS00280at 67.080 kb on - strand, within DDA3937_RS00280at 67.080 kb on - strand, within DDA3937_RS00280at 67.091 kb on + strand, within DDA3937_RS00280at 67.092 kb on - strand, within DDA3937_RS00280

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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64,764 + DDA3937_RS00270 0.47 -1.2
64,765 - DDA3937_RS00270 0.47 +0.6
64,765 - DDA3937_RS00270 0.47 +0.5
64,765 - DDA3937_RS00270 0.47 -3.0
64,786 - DDA3937_RS00270 0.49 +0.7
64,803 - +0.3
64,966 - DDA3937_RS00270 0.66 +1.1
64,986 + DDA3937_RS00270 0.68 -0.7
64,986 + DDA3937_RS00270 0.68 -2.1
64,986 + DDA3937_RS00270 0.68 -0.7
64,986 + DDA3937_RS00270 0.68 -1.2
64,986 + DDA3937_RS00270 0.68 -1.9
64,987 - DDA3937_RS00270 0.68 -1.0
65,008 + DDA3937_RS00270 0.70 -2.3
65,019 + DDA3937_RS00270 0.71 -1.1
65,019 + DDA3937_RS00270 0.71 -0.0
65,020 - DDA3937_RS00270 0.71 -0.7
65,058 + DDA3937_RS00270 0.74 -0.3
65,058 + DDA3937_RS00270 0.74 -0.7
65,122 - DDA3937_RS00270 0.80 +0.8
65,214 - DDA3937_RS00270 0.89 -1.1
65,214 - DDA3937_RS00270 0.89 -2.2
65,264 + +0.5
65,277 + -0.1
65,277 + -0.8
65,278 - -1.0
65,278 - -0.4
65,431 + -0.5
65,452 - -1.2
65,460 - -1.0
65,473 + +0.2
65,480 - +0.3
65,480 - +0.8
65,480 - +0.4
65,482 - +0.5
65,491 - -1.5
65,491 - -1.3
65,491 - -0.7
65,518 - -0.6
65,518 - +0.1
65,520 + +0.4
65,521 - +0.2
65,521 - -0.5
65,654 - +0.4
65,747 + +3.9
65,749 + +1.6
65,749 + +0.7
65,749 + -0.9
65,749 + -1.3
65,844 + DDA3937_RS00275 0.27 -0.5
65,943 + DDA3937_RS00275 0.55 -1.2
65,944 - DDA3937_RS00275 0.55 -1.2
65,944 - DDA3937_RS00275 0.55 -1.7
65,944 - DDA3937_RS00275 0.55 -0.6
65,944 - DDA3937_RS00275 0.55 -0.7
66,006 + +0.3
66,007 - DDA3937_RS00275 0.73 -2.3
66,007 - DDA3937_RS00275 0.73 -0.3
66,007 - DDA3937_RS00275 0.73 -1.3
66,082 + -2.2
66,115 - +1.3
66,198 + +0.5
66,198 + -0.5
66,199 - -0.5
66,199 - -0.7
66,199 - -0.8
66,380 + DDA3937_RS00280 0.20 -0.5
66,381 - DDA3937_RS00280 0.20 +0.3
66,383 + DDA3937_RS00280 0.21 +0.2
66,383 + DDA3937_RS00280 0.21 -2.4
66,383 + DDA3937_RS00280 0.21 -1.2
66,383 + DDA3937_RS00280 0.21 -0.9
66,383 + DDA3937_RS00280 0.21 -1.3
66,384 - DDA3937_RS00280 0.21 -2.2
66,406 - DDA3937_RS00280 0.22 -1.0
66,512 + DDA3937_RS00280 0.30 -0.2
66,512 + DDA3937_RS00280 0.30 -2.8
66,634 + DDA3937_RS00280 0.39 +0.3
66,635 - DDA3937_RS00280 0.39 +0.5
66,635 - DDA3937_RS00280 0.39 -0.5
66,638 + DDA3937_RS00280 0.39 -2.7
66,638 + DDA3937_RS00280 0.39 -0.2
66,639 - DDA3937_RS00280 0.39 -0.3
66,639 - DDA3937_RS00280 0.39 +0.6
66,639 - DDA3937_RS00280 0.39 -1.6
66,757 - DDA3937_RS00280 0.48 -0.8
66,816 - DDA3937_RS00280 0.52 +1.7
66,827 + DDA3937_RS00280 0.53 -0.6
67,080 - DDA3937_RS00280 0.71 +0.4
67,080 - DDA3937_RS00280 0.71 -0.6
67,080 - DDA3937_RS00280 0.71 -1.2
67,091 + DDA3937_RS00280 0.72 -0.4
67,092 - DDA3937_RS00280 0.72 -2.2

Or see this region's nucleotide sequence