Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23525

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,187,226	+				-1.6
3,187,226	+				+0.7
3,187,226	+				-1.9
3,187,226	+				-0.7
3,187,226	+				-2.4
3,187,226	+				+0.2
3,187,226	+				-3.3
3,187,226	+				-1.8
3,187,227	-				+1.6
3,187,227	-				+0.5
3,187,227	-				-0.0
3,187,227	-				-1.3
3,187,227	-				+3.2
3,187,288	+				-0.8
3,187,289	-				+0.7
3,187,441	+				-0.4
3,187,441	+				-0.2
3,187,441	+				-2.5
3,187,442	-				+1.1
3,187,442	-				+0.8
3,187,442	-				+1.9
3,187,463	+				-1.4
3,187,464	-				+1.7
3,187,517	-				+0.1
3,187,643	+				-2.1
3,187,644	-				-0.8
3,187,665	+				-2.5
3,187,665	+				-1.9
3,187,665	+				-0.8
3,187,666	-				+1.3
3,187,666	-				+0.1
3,187,666	-				-1.8
3,187,666	-				+2.0
3,187,732	+				-1.8
3,187,781	-				-1.0
3,187,781	-				+0.8
3,187,859	+				-1.0
3,187,865	+				-0.8
3,187,865	+				-0.3
3,187,866	-				-1.0
3,187,866	-				+0.8
3,187,928	+				+0.6
3,187,928	+				-2.1
3,187,944	-				+2.6
3,187,976	+				-2.4
3,187,976	+				-2.3
3,187,977	-				-1.0
3,187,977	-				+0.6
3,187,980	-				-2.1
3,188,006	+				+1.1
3,188,006	+				-1.9
3,188,006	+				-2.6
3,188,010	+				-1.0
3,188,010	+				-2.4
3,188,011	-				+0.0
3,188,031	+				-1.6
3,188,039	+				+2.9
3,188,039	+				-2.4
3,188,039	+				-0.0
3,188,039	+				-2.4
3,188,039	+				-2.5
3,188,039	+				-0.9
3,188,039	+				-3.8
3,188,040	-				-1.1
3,188,040	-				-0.4
3,188,040	-				+0.6
3,188,040	-				-2.7
3,188,042	+				+1.6
3,188,042	+				+1.1
3,188,042	+				-2.4
3,188,043	-				+0.2
3,188,043	-				+1.0
3,188,043	-				-3.0
3,188,043	-				-0.4
3,188,063	+				-1.4
3,188,063	+				-2.6
3,188,076	+				+0.4
3,188,088	-				-1.0
3,188,113	-				-1.4
3,188,132	+				-0.4
3,188,132	+				+0.6
3,188,132	+				-2.0
3,188,133	-				-1.9
3,188,133	-				-3.1
3,188,133	-				-2.5
3,188,133	-				-1.6
3,188,204	+				-1.0
3,188,219	+				-1.7
3,188,219	+				-2.4
3,188,219	+				+1.4
3,188,219	+				-1.5
3,188,220	-				+0.8
3,188,220	-				+0.6
3,188,227	+		DDA3937_RS23525	0.12	+0.6
3,188,228	-		DDA3937_RS23525	0.13	-0.0
3,188,278	+				+2.3
3,188,279	-		DDA3937_RS23525	0.30	-1.4
3,188,309	+		DDA3937_RS23525	0.40	-2.8
3,188,309	+		DDA3937_RS23525	0.40	-2.7
3,188,310	-		DDA3937_RS23525	0.40	-0.9
3,188,310	-		DDA3937_RS23525	0.40	-3.1
3,188,310	-		DDA3937_RS23525	0.40	-1.0
3,188,358	-		DDA3937_RS23525	0.57	+0.6
3,188,406	-		DDA3937_RS23525	0.73	-3.0
3,188,439	+		DDA3937_RS23525	0.84	-2.3
3,188,439	+		DDA3937_RS23525	0.84	-2.3
3,188,439	+				-0.8
3,188,439	+		DDA3937_RS23525	0.84	-0.0
3,188,440	-		DDA3937_RS23525	0.85	-2.1
3,188,440	-		DDA3937_RS23525	0.85	-1.4
3,188,459	+				+0.6
3,188,460	-				-2.0
3,188,538	+		DDA3937_RS23270	0.21	-0.0
3,188,539	-		DDA3937_RS23270	0.21	+0.6
3,188,578	+		DDA3937_RS23270	0.35	+1.4
3,188,587	+		DDA3937_RS23270	0.38	+0.6
3,188,587	+		DDA3937_RS23270	0.38	-1.7
3,188,587	+		DDA3937_RS23270	0.38	+0.9
3,188,587	+		DDA3937_RS23270	0.38	+0.2
3,188,587	+		DDA3937_RS23270	0.38	+2.3
3,188,587	+		DDA3937_RS23270	0.38	-1.8
3,188,587	+		DDA3937_RS23270	0.38	-0.6
3,188,587	+		DDA3937_RS23270	0.38	+1.6
3,188,587	+		DDA3937_RS23270	0.38	-2.1
3,188,587	+		DDA3937_RS23270	0.38	-1.0
3,188,587	+		DDA3937_RS23270	0.38	+0.5
3,188,587	+				-0.0
3,188,587	+		DDA3937_RS23270	0.38	+1.8
3,188,587	+		DDA3937_RS23270	0.38	+0.6
3,188,587	+		DDA3937_RS23270	0.38	+3.2
3,188,587	+		DDA3937_RS23270	0.38	+1.8
3,188,587	+		DDA3937_RS23270	0.38	-0.4
3,188,588	-		DDA3937_RS23270	0.39	-3.0
3,188,588	-		DDA3937_RS23270	0.39	+1.3
3,188,588	-		DDA3937_RS23270	0.39	+0.7
3,188,588	-		DDA3937_RS23270	0.39	-3.1
3,188,588	-		DDA3937_RS23270	0.39	+0.6
3,188,588	-		DDA3937_RS23270	0.39	-1.4
3,188,588	-		DDA3937_RS23270	0.39	-3.9
3,188,588	-		DDA3937_RS23270	0.39	-3.0
3,188,588	-		DDA3937_RS23270	0.39	+3.2
3,188,588	-		DDA3937_RS23270	0.39	-1.9
3,188,588	-		DDA3937_RS23270	0.39	-0.8
3,188,588	-		DDA3937_RS23270	0.39	+2.1
3,188,588	-		DDA3937_RS23270	0.39	+0.4
3,188,592	+		DDA3937_RS23270	0.40	+0.4
3,188,592	+		DDA3937_RS23270	0.40	-2.0
3,188,593	-		DDA3937_RS23270	0.41	-2.1
3,188,651	+		DDA3937_RS23270	0.62	-0.2
3,188,654	+		DDA3937_RS23270	0.63	-0.0
3,188,654	+		DDA3937_RS23270	0.63	-0.7
3,188,655	-		DDA3937_RS23270	0.63	+1.8
3,188,664	+		DDA3937_RS23270	0.67	-1.2
3,188,775	+				-1.3
3,188,775	+				+0.6
3,188,787	+		DDA3937_RS13965	0.11	-2.3
3,188,847	-		DDA3937_RS13965	0.30	-0.8
3,188,847	-		DDA3937_RS13965	0.30	-2.0
3,188,847	-		DDA3937_RS13965	0.30	-2.3
3,188,847	-		DDA3937_RS13965	0.30	+1.6
3,188,876	-		DDA3937_RS13965	0.40	+0.4
3,188,876	-		DDA3937_RS13965	0.40	-0.8
3,188,990	+		DDA3937_RS13965	0.76	-0.8
3,189,049	+				-0.4
3,189,049	+				-4.0
3,189,051	+				-2.8
3,189,123	-		DDA3937_RS13970	0.23	-0.8
3,189,123	-		DDA3937_RS13970	0.23	-1.8
3,189,223	+		DDA3937_RS13970	0.65	-1.0
3,189,223	+		DDA3937_RS13970	0.65	-1.3
3,189,248	+		DDA3937_RS13970	0.76	+4.1
3,189,248	+		DDA3937_RS13970	0.76	-2.5
3,189,248	+		DDA3937_RS13970	0.76	-1.3
3,189,261	-		DDA3937_RS13970	0.81	+1.7
3,189,326	-				-0.0
3,189,326	-				-0.8
3,189,346	-				-3.0
3,189,348	+				-2.6
3,189,349	-				-2.1
3,189,349	-				+1.4
3,189,354	+				-1.4
3,189,355	-				+0.2
3,189,355	-				+0.7
3,189,359	+				-3.6
3,189,444	+				-1.9
3,189,446	+				-2.4