Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01910 and DDA3937_RS23395 are separated by 553 nucleotides DDA3937_RS23395 and DDA3937_RS01915 are separated by 210 nucleotides DDA3937_RS01915 and DDA3937_RS01920 are separated by 112 nucleotides
DDA3937_RS01910: DDA3937_RS01910 - indoleacetamide hydrolase, at 428,150 to 429,490
_RS01910
DDA3937_RS23395: DDA3937_RS23395 - hypothetical protein, at 430,044 to 430,799
_RS23395
DDA3937_RS01915: DDA3937_RS01915 - 2-iminobutanoate/2-iminopropanoate deaminase, at 431,010 to 431,396
_RS01915
DDA3937_RS01920: DDA3937_RS01920 - aspartate carbamoyltransferase regulatory subunit, at 431,509 to 431,973
_RS01920
Position (kb) 430
431 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 429.058 kb on - strand, within DDA3937_RS01910 at 429.158 kb on - strand, within DDA3937_RS01910 at 429.173 kb on + strand, within DDA3937_RS01910 at 429.173 kb on + strand, within DDA3937_RS01910 at 429.174 kb on - strand, within DDA3937_RS01910 at 429.174 kb on - strand, within DDA3937_RS01910 at 429.174 kb on - strand, within DDA3937_RS01910 at 429.194 kb on - strand, within DDA3937_RS01910 at 429.233 kb on - strand, within DDA3937_RS01910 at 429.237 kb on - strand, within DDA3937_RS01910 at 429.248 kb on - strand, within DDA3937_RS01910 at 429.248 kb on - strand, within DDA3937_RS01910 at 429.248 kb on - strand, within DDA3937_RS01910 at 429.255 kb on + strand, within DDA3937_RS01910 at 429.255 kb on + strand, within DDA3937_RS01910 at 429.256 kb on - strand, within DDA3937_RS01910 at 429.256 kb on - strand, within DDA3937_RS01910 at 429.256 kb on - strand, within DDA3937_RS01910 at 429.257 kb on + strand, within DDA3937_RS01910 at 429.258 kb on - strand, within DDA3937_RS01910 at 429.263 kb on - strand, within DDA3937_RS01910 at 429.325 kb on + strand, within DDA3937_RS01910 at 429.326 kb on - strand, within DDA3937_RS01910 at 429.331 kb on + strand, within DDA3937_RS01910 at 429.334 kb on + strand, within DDA3937_RS01910 at 429.343 kb on - strand, within DDA3937_RS01910 at 429.368 kb on - strand at 429.368 kb on - strand at 429.368 kb on - strand at 429.368 kb on - strand at 429.370 kb on + strand at 429.371 kb on - strand at 429.371 kb on - strand at 429.399 kb on + strand at 429.399 kb on + strand at 429.468 kb on + strand at 429.480 kb on + strand at 429.481 kb on - strand at 429.495 kb on - strand at 429.499 kb on - strand at 429.528 kb on + strand at 429.528 kb on + strand at 429.556 kb on - strand at 429.579 kb on + strand at 429.579 kb on + strand at 429.580 kb on - strand at 429.583 kb on + strand at 429.584 kb on - strand at 429.584 kb on - strand at 429.622 kb on - strand at 429.652 kb on + strand at 429.670 kb on - strand at 429.670 kb on - strand at 429.674 kb on - strand at 429.791 kb on + strand at 429.792 kb on - strand at 429.808 kb on + strand at 429.808 kb on + strand at 429.810 kb on + strand at 429.884 kb on + strand at 429.884 kb on + strand at 429.885 kb on - strand at 429.885 kb on - strand at 429.886 kb on + strand at 429.886 kb on + strand at 429.886 kb on + strand at 429.887 kb on - strand at 429.887 kb on - strand at 429.887 kb on - strand at 429.887 kb on - strand at 429.890 kb on - strand at 429.890 kb on - strand at 429.890 kb on - strand at 429.890 kb on - strand at 429.892 kb on - strand at 429.892 kb on - strand at 429.894 kb on - strand at 429.903 kb on - strand at 429.959 kb on + strand at 430.023 kb on + strand at 430.024 kb on - strand at 430.024 kb on - strand at 430.024 kb on - strand at 430.031 kb on + strand at 430.031 kb on + strand at 430.032 kb on - strand at 430.147 kb on - strand, within DDA3937_RS23395 at 430.219 kb on + strand, within DDA3937_RS23395 at 430.302 kb on + strand, within DDA3937_RS23395 at 430.302 kb on + strand, within DDA3937_RS23395 at 430.320 kb on + strand, within DDA3937_RS23395 at 430.327 kb on + strand, within DDA3937_RS23395 at 430.370 kb on - strand, within DDA3937_RS23395 at 430.370 kb on - strand, within DDA3937_RS23395 at 430.377 kb on + strand, within DDA3937_RS23395 at 430.378 kb on - strand, within DDA3937_RS23395 at 430.445 kb on - strand, within DDA3937_RS23395 at 430.520 kb on - strand, within DDA3937_RS23395 at 430.534 kb on - strand, within DDA3937_RS23395 at 430.573 kb on - strand, within DDA3937_RS23395 at 430.577 kb on + strand, within DDA3937_RS23395 at 430.577 kb on + strand, within DDA3937_RS23395 at 430.612 kb on + strand, within DDA3937_RS23395 at 430.613 kb on - strand, within DDA3937_RS23395 at 430.613 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.625 kb on + strand, within DDA3937_RS23395 at 430.626 kb on - strand, within DDA3937_RS23395 at 430.639 kb on - strand, within DDA3937_RS23395 at 430.708 kb on + strand, within DDA3937_RS23395 at 430.708 kb on + strand, within DDA3937_RS23395 at 430.710 kb on + strand, within DDA3937_RS23395 at 430.711 kb on - strand, within DDA3937_RS23395 at 430.716 kb on - strand, within DDA3937_RS23395 at 430.719 kb on - strand, within DDA3937_RS23395 at 430.723 kb on - strand, within DDA3937_RS23395 at 430.723 kb on - strand, within DDA3937_RS23395 at 430.730 kb on + strand at 430.731 kb on - strand at 430.741 kb on + strand at 430.742 kb on - strand at 430.774 kb on + strand at 430.774 kb on + strand at 430.798 kb on - strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.802 kb on - strand at 430.802 kb on - strand at 430.802 kb on - strand at 430.805 kb on + strand at 430.805 kb on + strand at 430.880 kb on - strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.901 kb on - strand at 430.905 kb on + strand at 430.937 kb on - strand at 430.937 kb on - strand at 430.954 kb on + strand at 431.125 kb on + strand, within DDA3937_RS01915 at 431.126 kb on - strand, within DDA3937_RS01915 at 431.181 kb on - strand, within DDA3937_RS01915 at 431.347 kb on + strand, within DDA3937_RS01915 at 431.378 kb on + strand at 431.396 kb on + strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.439 kb on - strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.555 kb on + strand at 431.555 kb on + strand at 431.556 kb on - strand, within DDA3937_RS01920 at 431.556 kb on - strand, within DDA3937_RS01920 at 431.631 kb on + strand, within DDA3937_RS01920 at 431.632 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.785 kb on - strand, within DDA3937_RS01920
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 429,058 - DDA3937_RS01910 0.68 -3.1 429,158 - DDA3937_RS01910 0.75 +0.6 429,173 + DDA3937_RS01910 0.76 -0.1 429,173 + DDA3937_RS01910 0.76 +1.1 429,174 - DDA3937_RS01910 0.76 -1.6 429,174 - DDA3937_RS01910 0.76 -2.4 429,174 - DDA3937_RS01910 0.76 -2.7 429,194 - DDA3937_RS01910 0.78 +1.6 429,233 - DDA3937_RS01910 0.81 -0.9 429,237 - DDA3937_RS01910 0.81 +0.1 429,248 - DDA3937_RS01910 0.82 +2.4 429,248 - DDA3937_RS01910 0.82 -1.8 429,248 - DDA3937_RS01910 0.82 -1.9 429,255 + DDA3937_RS01910 0.82 -0.9 429,255 + DDA3937_RS01910 0.82 -2.3 429,256 - DDA3937_RS01910 0.82 +1.3 429,256 - DDA3937_RS01910 0.82 -0.1 429,256 - DDA3937_RS01910 0.82 +0.0 429,257 + DDA3937_RS01910 0.83 +1.8 429,258 - DDA3937_RS01910 0.83 -2.1 429,263 - DDA3937_RS01910 0.83 -1.7 429,325 + DDA3937_RS01910 0.88 -0.3 429,326 - DDA3937_RS01910 0.88 -3.2 429,331 + DDA3937_RS01910 0.88 +0.3 429,334 + DDA3937_RS01910 0.88 +0.1 429,343 - DDA3937_RS01910 0.89 +2.8 429,368 - -1.5 429,368 - +3.4 429,368 - -1.4 429,368 - -3.3 429,370 + -0.3 429,371 - -4.8 429,371 - +1.7 429,399 + +0.0 429,399 + +1.7 429,468 + -0.8 429,480 + -1.3 429,481 - -0.8 429,495 - +0.3 429,499 - -0.8 429,528 + -0.5 429,528 + -3.3 429,556 - +0.7 429,579 + +1.3 429,579 + -2.2 429,580 - -1.5 429,583 + -0.3 429,584 - +0.2 429,584 - -0.7 429,622 - +0.6 429,652 + -1.1 429,670 - -0.7 429,670 - -1.1 429,674 - +0.5 429,791 + +0.8 429,792 - -1.5 429,808 + -0.1 429,808 + +3.5 429,810 + -0.9 429,884 + -1.0 429,884 + +1.2 429,885 - -1.1 429,885 - +2.1 429,886 + +1.0 429,886 + +1.1 429,886 + -3.1 429,887 - +2.7 429,887 - -2.2 429,887 - -2.0 429,887 - +2.3 429,890 - -1.9 429,890 - -2.0 429,890 - +0.5 429,890 - +2.0 429,892 - -0.3 429,892 - -1.7 429,894 - -2.1 429,903 - -1.0 429,959 + +1.7 430,023 + +0.7 430,024 - -2.7 430,024 - +2.3 430,024 - -1.9 430,031 + +0.9 430,031 + +0.9 430,032 - -2.2 430,147 - DDA3937_RS23395 0.14 -1.7 430,219 + DDA3937_RS23395 0.23 -2.9 430,302 + DDA3937_RS23395 0.34 -2.7 430,302 + DDA3937_RS23395 0.34 -0.9 430,320 + DDA3937_RS23395 0.37 -1.5 430,327 + DDA3937_RS23395 0.37 -1.1 430,370 - DDA3937_RS23395 0.43 -0.7 430,370 - DDA3937_RS23395 0.43 -2.1 430,377 + DDA3937_RS23395 0.44 -2.3 430,378 - DDA3937_RS23395 0.44 +0.2 430,445 - DDA3937_RS23395 0.53 -1.8 430,520 - DDA3937_RS23395 0.63 -2.7 430,534 - DDA3937_RS23395 0.65 +0.1 430,573 - DDA3937_RS23395 0.70 +0.1 430,577 + DDA3937_RS23395 0.71 -0.1 430,577 + DDA3937_RS23395 0.71 -0.7 430,612 + DDA3937_RS23395 0.75 -1.6 430,613 - DDA3937_RS23395 0.75 -3.4 430,613 - DDA3937_RS23395 0.75 -1.9 430,616 - DDA3937_RS23395 0.76 -1.1 430,616 - DDA3937_RS23395 0.76 -2.3 430,616 - DDA3937_RS23395 0.76 -1.6 430,625 + DDA3937_RS23395 0.77 +0.7 430,626 - DDA3937_RS23395 0.77 -0.7 430,639 - DDA3937_RS23395 0.79 -2.3 430,708 + DDA3937_RS23395 0.88 -0.6 430,708 + DDA3937_RS23395 0.88 +1.0 430,710 + DDA3937_RS23395 0.88 -1.4 430,711 - DDA3937_RS23395 0.88 -2.8 430,716 - DDA3937_RS23395 0.89 -1.4 430,719 - DDA3937_RS23395 0.89 -2.0 430,723 - DDA3937_RS23395 0.90 -3.8 430,723 - DDA3937_RS23395 0.90 -0.6 430,730 + +0.3 430,731 - -0.6 430,741 + -0.8 430,742 - -0.8 430,774 + +0.9 430,774 + +1.3 430,798 - -1.0 430,801 + +0.3 430,801 + +0.2 430,801 + -0.2 430,802 - -1.0 430,802 - -0.9 430,802 - -0.4 430,805 + -1.7 430,805 + +1.2 430,880 - +1.8 430,900 + +0.6 430,900 + +0.7 430,901 - -1.9 430,905 + -0.0 430,937 - -1.3 430,937 - -0.9 430,954 + +0.4 431,125 + DDA3937_RS01915 0.30 -1.3 431,126 - DDA3937_RS01915 0.30 -0.3 431,181 - DDA3937_RS01915 0.44 -0.3 431,347 + DDA3937_RS01915 0.87 +0.6 431,378 + -1.1 431,396 + +1.7 431,397 - +1.5 431,397 - +1.4 431,397 - +0.4 431,410 + -1.7 431,410 + -0.0 431,410 + +3.2 431,410 + -2.2 431,410 + +0.3 431,411 - +2.5 431,411 - -2.7 431,411 - +2.0 431,411 - +0.3 431,411 - -3.2 431,439 - -2.0 431,513 + -0.7 431,513 + +0.7 431,513 + -0.3 431,513 + -3.0 431,513 + -2.8 431,513 + +2.2 431,514 - -2.5 431,514 - +0.3 431,514 - -3.0 431,514 - +0.4 431,514 - +2.7 431,514 - -0.3 431,555 + -2.0 431,555 + -0.7 431,556 - DDA3937_RS01920 0.10 +0.6 431,556 - DDA3937_RS01920 0.10 +1.2 431,631 + DDA3937_RS01920 0.26 -0.8 431,632 - DDA3937_RS01920 0.26 +2.5 431,709 - DDA3937_RS01920 0.43 -2.4 431,709 - DDA3937_RS01920 0.43 -1.3 431,709 - DDA3937_RS01920 0.43 +2.1 431,709 - DDA3937_RS01920 0.43 -2.0 431,744 + DDA3937_RS01920 0.51 +1.7 431,744 + DDA3937_RS01920 0.51 -1.8 431,744 + DDA3937_RS01920 0.51 -1.3 431,744 + DDA3937_RS01920 0.51 +0.2 431,745 - DDA3937_RS01920 0.51 -0.7 431,745 - DDA3937_RS01920 0.51 +0.0 431,745 - DDA3937_RS01920 0.51 +1.2 431,785 - DDA3937_RS01920 0.59 +0.7
Or see this region's nucleotide sequence