Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01115 and DDA3937_RS23385 are separated by 267 nucleotides DDA3937_RS23385 and DDA3937_RS21760 are separated by 224 nucleotides DDA3937_RS21760 and DDA3937_RS01120 are separated by 158 nucleotides
DDA3937_RS01115: DDA3937_RS01115 - DUF1176 domain-containing protein, at 256,044 to 257,141
_RS01115
DDA3937_RS23385: DDA3937_RS23385 - DUF1127 domain-containing protein, at 257,409 to 257,591
_RS23385
DDA3937_RS21760: DDA3937_RS21760 - DUF1127 domain-containing protein, at 257,816 to 258,001
_RS21760
DDA3937_RS01120: DDA3937_RS01120 - PLP-dependent aminotransferase family protein, at 258,160 to 259,596
_RS01120
Position (kb) 257
258
259 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 256.892 kb on + strand, within DDA3937_RS01115 at 256.893 kb on - strand, within DDA3937_RS01115 at 256.947 kb on + strand, within DDA3937_RS01115 at 256.948 kb on - strand, within DDA3937_RS01115 at 256.971 kb on + strand, within DDA3937_RS01115 at 256.972 kb on - strand, within DDA3937_RS01115 at 257.026 kb on + strand at 257.026 kb on + strand, within DDA3937_RS01115 at 257.026 kb on + strand, within DDA3937_RS01115 at 257.027 kb on - strand, within DDA3937_RS01115 at 257.027 kb on - strand, within DDA3937_RS01115 at 257.058 kb on + strand at 257.058 kb on + strand at 257.064 kb on + strand at 257.064 kb on + strand at 257.064 kb on + strand at 257.065 kb on - strand at 257.065 kb on - strand at 257.065 kb on - strand at 257.234 kb on - strand at 257.250 kb on + strand at 257.250 kb on + strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.302 kb on + strand at 257.303 kb on - strand at 257.327 kb on + strand at 257.410 kb on + strand at 257.411 kb on - strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.440 kb on - strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.474 kb on + strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.479 kb on - strand, within DDA3937_RS23385 at 257.497 kb on - strand, within DDA3937_RS23385 at 257.564 kb on + strand, within DDA3937_RS23385 at 257.565 kb on - strand, within DDA3937_RS23385 at 257.597 kb on + strand at 257.598 kb on - strand at 257.607 kb on - strand at 257.677 kb on + strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.693 kb on + strand at 257.694 kb on - strand at 257.727 kb on - strand at 257.756 kb on - strand at 257.769 kb on - strand at 257.850 kb on - strand at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.965 kb on + strand, within DDA3937_RS21760 at 257.965 kb on + strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.970 kb on - strand, within DDA3937_RS21760 at 257.970 kb on - strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.995 kb on + strand at 257.995 kb on + strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 258.004 kb on + strand at 258.004 kb on + strand at 258.005 kb on - strand at 258.005 kb on - strand at 258.005 kb on - strand at 258.089 kb on - strand at 258.137 kb on + strand at 258.137 kb on + strand at 258.138 kb on - strand at 258.138 kb on - strand at 258.188 kb on + strand at 258.188 kb on + strand at 258.188 kb on + strand at 258.287 kb on + strand at 258.287 kb on + strand at 258.288 kb on - strand at 258.288 kb on - strand at 258.288 kb on - strand at 258.298 kb on + strand at 258.298 kb on + strand at 258.298 kb on + strand at 258.298 kb on + strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.301 kb on + strand at 258.301 kb on + strand at 258.301 kb on + strand at 258.301 kb on + strand at 258.302 kb on - strand at 258.349 kb on + strand, within DDA3937_RS01120 at 258.349 kb on + strand, within DDA3937_RS01120 at 258.350 kb on - strand, within DDA3937_RS01120 at 258.506 kb on + strand, within DDA3937_RS01120 at 258.507 kb on - strand, within DDA3937_RS01120 at 258.522 kb on + strand, within DDA3937_RS01120 at 258.522 kb on + strand, within DDA3937_RS01120 at 258.656 kb on + strand, within DDA3937_RS01120 at 258.656 kb on + strand, within DDA3937_RS01120 at 258.690 kb on + strand, within DDA3937_RS01120 at 258.690 kb on + strand, within DDA3937_RS01120 at 258.691 kb on - strand, within DDA3937_RS01120 at 258.738 kb on + strand, within DDA3937_RS01120 at 258.749 kb on + strand, within DDA3937_RS01120 at 258.749 kb on + strand, within DDA3937_RS01120 at 258.750 kb on - strand, within DDA3937_RS01120 at 258.894 kb on + strand, within DDA3937_RS01120 at 258.895 kb on - strand, within DDA3937_RS01120
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 256,892 + DDA3937_RS01115 0.77 +3.4 256,893 - DDA3937_RS01115 0.77 -2.0 256,947 + DDA3937_RS01115 0.82 +1.0 256,948 - DDA3937_RS01115 0.82 +0.8 256,971 + DDA3937_RS01115 0.84 +0.7 256,972 - DDA3937_RS01115 0.85 -2.7 257,026 + +0.7 257,026 + DDA3937_RS01115 0.89 -0.7 257,026 + DDA3937_RS01115 0.89 -1.9 257,027 - DDA3937_RS01115 0.90 -1.7 257,027 - DDA3937_RS01115 0.90 -0.5 257,058 + -0.0 257,058 + -3.1 257,064 + -1.9 257,064 + -2.6 257,064 + -1.6 257,065 - -0.5 257,065 - +1.4 257,065 - +1.2 257,234 - +0.3 257,250 + -0.9 257,250 + -1.9 257,251 - -0.0 257,251 - +0.3 257,251 - -1.9 257,251 - +0.7 257,302 + -2.2 257,303 - +0.4 257,327 + -0.9 257,410 + +0.9 257,411 - -2.6 257,415 + +0.5 257,415 + -3.0 257,415 + +1.5 257,415 + +1.5 257,415 + +0.1 257,415 + -0.0 257,415 + +0.7 257,415 + +0.8 257,416 - -0.9 257,416 - -1.8 257,416 - -0.5 257,416 - +2.1 257,416 - +2.5 257,416 - -1.7 257,416 - +1.7 257,440 - DDA3937_RS23385 0.17 +1.2 257,445 + DDA3937_RS23385 0.20 +2.9 257,445 + DDA3937_RS23385 0.20 +0.4 257,445 + DDA3937_RS23385 0.20 -1.3 257,445 + DDA3937_RS23385 0.20 -0.7 257,445 + DDA3937_RS23385 0.20 +0.4 257,446 - DDA3937_RS23385 0.20 -0.3 257,446 - DDA3937_RS23385 0.20 +1.5 257,446 - DDA3937_RS23385 0.20 +1.5 257,446 - DDA3937_RS23385 0.20 -3.0 257,474 + DDA3937_RS23385 0.36 +0.4 257,475 - DDA3937_RS23385 0.36 -0.2 257,475 - DDA3937_RS23385 0.36 -2.8 257,475 - DDA3937_RS23385 0.36 -2.8 257,475 - DDA3937_RS23385 0.36 -1.7 257,479 - DDA3937_RS23385 0.38 +0.7 257,497 - DDA3937_RS23385 0.48 -0.1 257,564 + DDA3937_RS23385 0.85 +1.0 257,565 - DDA3937_RS23385 0.85 -0.2 257,597 + +1.1 257,598 - +0.7 257,607 - -0.9 257,677 + +0.4 257,678 - -3.2 257,678 - -0.7 257,678 - -1.8 257,678 - +0.4 257,678 - -1.5 257,678 - +0.1 257,678 - -1.1 257,678 - +0.7 257,693 + +2.6 257,694 - +0.4 257,727 - -3.1 257,756 - -0.9 257,769 - +0.1 257,850 - +3.9 257,924 + DDA3937_RS21760 0.58 -0.7 257,924 + DDA3937_RS21760 0.58 +0.6 257,924 + DDA3937_RS21760 0.58 +1.3 257,924 + DDA3937_RS21760 0.58 +2.9 257,924 + DDA3937_RS21760 0.58 +0.6 257,924 + DDA3937_RS21760 0.58 -1.9 257,924 + DDA3937_RS21760 0.58 -2.6 257,925 - DDA3937_RS21760 0.59 -2.7 257,925 - DDA3937_RS21760 0.59 -2.2 257,925 - DDA3937_RS21760 0.59 +0.8 257,925 - DDA3937_RS21760 0.59 +0.1 257,925 - DDA3937_RS21760 0.59 +2.2 257,925 - DDA3937_RS21760 0.59 +0.1 257,925 - DDA3937_RS21760 0.59 -2.9 257,925 - DDA3937_RS21760 0.59 -0.7 257,927 + DDA3937_RS21760 0.60 +1.7 257,927 + DDA3937_RS21760 0.60 +0.7 257,927 + DDA3937_RS21760 0.60 +1.2 257,965 + DDA3937_RS21760 0.80 -0.9 257,965 + DDA3937_RS21760 0.80 +0.5 257,966 - DDA3937_RS21760 0.81 -0.7 257,966 - DDA3937_RS21760 0.81 +0.2 257,966 - DDA3937_RS21760 0.81 -0.1 257,969 + DDA3937_RS21760 0.82 +2.5 257,969 + DDA3937_RS21760 0.82 +0.7 257,969 + DDA3937_RS21760 0.82 +1.7 257,969 + DDA3937_RS21760 0.82 -0.2 257,969 + DDA3937_RS21760 0.82 -0.8 257,969 + DDA3937_RS21760 0.82 -1.9 257,970 - DDA3937_RS21760 0.83 +1.1 257,970 - DDA3937_RS21760 0.83 -2.7 257,972 + DDA3937_RS21760 0.84 +2.1 257,972 + DDA3937_RS21760 0.84 -3.5 257,972 + DDA3937_RS21760 0.84 +0.8 257,972 + DDA3937_RS21760 0.84 +0.2 257,973 - DDA3937_RS21760 0.84 -1.4 257,973 - DDA3937_RS21760 0.84 -1.0 257,973 - DDA3937_RS21760 0.84 -2.1 257,973 - DDA3937_RS21760 0.84 +0.7 257,995 + -0.1 257,995 + +0.1 257,996 - +0.3 257,996 - +0.2 257,996 - -1.1 257,996 - +0.3 257,996 - -1.5 258,004 + -0.8 258,004 + -0.9 258,005 - -3.4 258,005 - -1.1 258,005 - -0.8 258,089 - -1.3 258,137 + -1.9 258,137 + +1.7 258,138 - +0.9 258,138 - -3.3 258,188 + +3.4 258,188 + -1.8 258,188 + +0.2 258,287 + +1.2 258,287 + +1.1 258,288 - -3.9 258,288 - +2.8 258,288 - +0.8 258,298 + -0.4 258,298 + -2.0 258,298 + -0.7 258,298 + +1.2 258,299 - -1.9 258,299 - -2.2 258,299 - -1.3 258,299 - -2.0 258,299 - +0.9 258,299 - -1.5 258,301 + +0.7 258,301 + -2.0 258,301 + +0.3 258,301 + -3.0 258,302 - +0.1 258,349 + DDA3937_RS01120 0.13 +3.1 258,349 + DDA3937_RS01120 0.13 -1.7 258,350 - DDA3937_RS01120 0.13 +0.9 258,506 + DDA3937_RS01120 0.24 -1.6 258,507 - DDA3937_RS01120 0.24 -0.4 258,522 + DDA3937_RS01120 0.25 +0.6 258,522 + DDA3937_RS01120 0.25 +1.5 258,656 + DDA3937_RS01120 0.35 -0.5 258,656 + DDA3937_RS01120 0.35 -1.7 258,690 + DDA3937_RS01120 0.37 +0.5 258,690 + DDA3937_RS01120 0.37 +1.3 258,691 - DDA3937_RS01120 0.37 -0.3 258,738 + DDA3937_RS01120 0.40 -2.3 258,749 + DDA3937_RS01120 0.41 -1.8 258,749 + DDA3937_RS01120 0.41 -0.1 258,750 - DDA3937_RS01120 0.41 -1.7 258,894 + DDA3937_RS01120 0.51 -1.3 258,895 - DDA3937_RS01120 0.51 -3.8
Or see this region's nucleotide sequence