Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21395

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,871,863	+				+1.3
4,871,884	+				+1.5
4,871,920	-				+1.1
4,871,932	-				-1.3
4,871,948	-				+1.6
4,871,955	+				+0.2
4,871,956	-				+0.0
4,871,957	+				-2.7
4,871,966	+				+0.6
4,871,966	+				-0.6
4,871,966	+				-0.7
4,871,967	-				+1.2
4,871,967	-				-0.7
4,871,967	-				-0.7
4,871,967	-				+1.8
4,872,084	+				+0.1
4,872,084	+				-1.0
4,872,085	-				+1.0
4,872,085	-				+0.1
4,872,085	-				+1.1
4,872,085	-				-0.3
4,872,092	+				+1.8
4,872,092	+				-0.7
4,872,092	+				+0.1
4,872,092	+				+0.0
4,872,092	+				-1.2
4,872,092	+				-1.2
4,872,092	+				-3.5
4,872,092	+				-1.6
4,872,092	+				+1.7
4,872,093	-				+0.0
4,872,093	-				+2.1
4,872,093	-				+0.4
4,872,093	-				+1.4
4,872,093	-				+1.5
4,872,093	-				+0.8
4,872,093	-				+0.7
4,872,148	+				-1.0
4,872,148	+				+0.0
4,872,148	+				-2.4
4,872,149	-				-2.4
4,872,149	-				+2.7
4,872,149	-				+0.0
4,872,150	+				-2.1
4,872,150	+				-1.0
4,872,151	-				-0.5
4,872,151	-				-2.8
4,872,151	-				-0.4
4,872,151	-				-0.2
4,872,152	+				-0.9
4,872,152	+				-2.2
4,872,152	+				-2.5
4,872,152	+				-1.6
4,872,152	+				+1.3
4,872,152	+				-1.6
4,872,152	+				-1.2
4,872,153	-				-3.3
4,872,153	-				-1.7
4,872,153	-				+0.6
4,872,153	-				-1.2
4,872,153	-				-2.4
4,872,153	-				+1.5
4,872,153	-				-0.5
4,872,153	-				+0.4
4,872,153	-				-0.3
4,872,153	-				+1.1
4,872,153	-				+1.9
4,872,163	-				+0.2
4,872,204	+				-0.8
4,872,204	+				-1.7
4,872,204	+				+1.8
4,872,204	+				-2.0
4,872,204	+				-0.7
4,872,205	-				+0.3
4,872,205	-				-1.9
4,872,205	-				-0.4
4,872,205	-				-2.9
4,872,205	-				+1.9
4,872,226	+				+2.1
4,872,226	+				-2.8
4,872,227	-				+2.3
4,872,243	-				-1.9
4,872,247	-				+0.4
4,872,247	-				-2.4
4,872,258	+				+2.2
4,872,259	-				-0.3
4,872,259	-				+1.2
4,872,267	+				+1.7
4,872,267	+				+0.9
4,872,267	+				-1.4
4,872,267	+				-3.2
4,872,268	-				-1.0
4,872,270	+				+3.1
4,872,270	+				-0.1
4,872,270	+				-0.4
4,872,271	-				+0.8
4,872,271	-				-2.7
4,872,271	-				+1.2
4,872,271	-				-0.4
4,872,271	-				+0.2
4,872,271	-				+0.0
4,872,271	-				-0.8
4,872,282	+				-2.0
4,872,282	+				-0.4
4,872,283	-				-2.5
4,872,283	-				+1.8
4,872,283	-				+0.5
4,872,283	-				+0.5
4,872,296	+				-0.4
4,872,297	-				+0.8
4,872,297	-				+1.1
4,872,297	-				-1.9
4,872,315	+				-1.1
4,872,315	+				-0.6
4,872,329	+				+0.6
4,872,337	+				+0.0
4,872,337	+				+0.6
4,872,340	+				-0.9
4,872,355	+				-2.7
4,872,356	-				-0.7
4,872,383	-				+1.1
4,872,383	-				-0.9
4,872,383	-				-2.2
4,872,390	+				-0.4
4,872,390	+				+0.4
4,872,391	-				-0.9
4,872,391	-				+2.4
4,872,391	-				-1.0
4,872,391	-				+1.1
4,872,397	-				-1.6
4,872,454	-				-2.0
4,872,455	+				-1.2
4,872,455	+				-2.2
4,872,456	-				-2.6
4,872,457	+				-3.3
4,872,458	-				-1.2
4,872,525	-				+1.0
4,872,573	+				-2.0
4,872,590	+				-0.7
4,872,590	+				+0.3
4,872,590	+				-2.2
4,872,591	-				+0.7
4,872,591	-				+0.3
4,872,591	-				+0.5
4,872,625	+				+0.3
4,872,626	-				-0.1
4,872,672	-				+2.2
4,872,672	-				+1.7
4,872,701	+				-0.1
4,872,701	+				+1.3
4,872,702	-				-0.3
4,872,764	-				+0.5
4,872,769	+				+0.4
4,872,829	+				+2.0
4,872,829	+				-1.0
4,872,829	+				-1.6
4,872,830	-				+1.1
4,872,834	+				-1.0
4,872,838	+				-2.8
4,872,838	+				-0.1
4,872,838	+				+0.1
4,872,838	+				-1.4
4,872,839	-				-1.4
4,872,839	-				+3.2
4,872,839	-				+1.6
4,872,839	-				+0.3
4,872,839	-				+1.0
4,872,843	-				-1.9
4,872,856	+				-0.7
4,872,877	+				+1.0
4,872,877	+				-0.7
4,872,878	-				+0.1
4,872,878	-				+2.6
4,872,878	-				+1.0
4,872,920	+		DDA3937_RS21395	0.13	-1.0
4,872,920	+		DDA3937_RS21395	0.13	+2.1
4,872,920	+		DDA3937_RS21395	0.13	-2.4
4,872,921	-		DDA3937_RS21395	0.13	+0.3
4,872,921	-		DDA3937_RS21395	0.13	+2.2
4,872,926	+		DDA3937_RS21395	0.13	+0.8
4,872,926	+		DDA3937_RS21395	0.13	+1.3
4,872,927	-		DDA3937_RS21395	0.14	+0.0
4,872,927	-		DDA3937_RS21395	0.14	+1.2
4,872,935	+		DDA3937_RS21395	0.15	-0.7
4,872,936	-		DDA3937_RS21395	0.15	-0.3
4,872,936	-		DDA3937_RS21395	0.15	-2.1
4,872,936	-		DDA3937_RS21395	0.15	+0.4
4,872,954	-		DDA3937_RS21395	0.18	-2.7
4,872,956	+		DDA3937_RS21395	0.18	+0.6
4,872,956	+		DDA3937_RS21395	0.18	-3.1
4,872,956	+		DDA3937_RS21395	0.18	-0.4
4,872,956	+		DDA3937_RS21395	0.18	+0.8
4,872,957	-		DDA3937_RS21395	0.18	-1.2
4,872,957	-		DDA3937_RS21395	0.18	+2.2
4,873,014	-		DDA3937_RS21395	0.27	+0.0
4,873,062	+		DDA3937_RS21395	0.34	+0.5
4,873,062	+		DDA3937_RS21395	0.34	-1.7
4,873,063	-		DDA3937_RS21395	0.34	+1.0
4,873,070	+		DDA3937_RS21395	0.35	-3.0
4,873,070	+		DDA3937_RS21395	0.35	-2.6
4,873,071	-				+3.8
4,873,121	+		DDA3937_RS21395	0.43	-2.7
4,873,125	+		DDA3937_RS21395	0.44	-1.5
4,873,126	-		DDA3937_RS21395	0.44	-0.2
4,873,126	-		DDA3937_RS21395	0.44	-1.6
4,873,126	-		DDA3937_RS21395	0.44	-1.0
4,873,126	-		DDA3937_RS21395	0.44	-0.7
4,873,135	+		DDA3937_RS21395	0.45	-2.1
4,873,136	-		DDA3937_RS21395	0.45	+0.1
4,873,136	-		DDA3937_RS21395	0.45	-1.7
4,873,136	-		DDA3937_RS21395	0.45	+1.3
4,873,147	+		DDA3937_RS21395	0.47	-2.5
4,873,147	+		DDA3937_RS21395	0.47	+1.3
4,873,148	-		DDA3937_RS21395	0.47	-2.7
4,873,148	-		DDA3937_RS21395	0.47	+0.5
4,873,157	+		DDA3937_RS21395	0.48	-1.6
4,873,165	+		DDA3937_RS21395	0.50	-3.4
4,873,166	-		DDA3937_RS21395	0.50	+0.6
4,873,288	+		DDA3937_RS21395	0.68	-0.4
4,873,288	+		DDA3937_RS21395	0.68	+0.6
4,873,288	+		DDA3937_RS21395	0.68	+0.4
4,873,288	+		DDA3937_RS21395	0.68	-1.2
4,873,288	+		DDA3937_RS21395	0.68	+1.4
4,873,288	+		DDA3937_RS21395	0.68	-0.7
4,873,288	+		DDA3937_RS21395	0.68	-2.7
4,873,289	-		DDA3937_RS21395	0.68	+1.6
4,873,289	-		DDA3937_RS21395	0.68	-0.4
4,873,289	-		DDA3937_RS21395	0.68	+0.1
4,873,289	-		DDA3937_RS21395	0.68	-2.4
4,873,291	+		DDA3937_RS21395	0.69	+0.0
4,873,312	+		DDA3937_RS21395	0.72	-3.5
4,873,334	+		DDA3937_RS21395	0.75	-2.0
4,873,334	+		DDA3937_RS21395	0.75	+1.2
4,873,335	-		DDA3937_RS21395	0.75	-0.1
4,873,335	-		DDA3937_RS21395	0.75	-0.9
4,873,335	-		DDA3937_RS21395	0.75	-4.0
4,873,347	+		DDA3937_RS21395	0.77	+1.3
4,873,347	+		DDA3937_RS21395	0.77	-2.6
4,873,347	+		DDA3937_RS21395	0.77	-2.1
4,873,347	+		DDA3937_RS21395	0.77	-1.4
4,873,385	+		DDA3937_RS21395	0.83	-0.3
4,873,385	+		DDA3937_RS21395	0.83	-0.1
4,873,385	+		DDA3937_RS21395	0.83	+1.8
4,873,386	-		DDA3937_RS21395	0.83	-2.4
4,873,386	-		DDA3937_RS21395	0.83	-3.6
4,873,386	-		DDA3937_RS21395	0.83	+0.6
4,873,416	-		DDA3937_RS21395	0.88	+0.7
4,873,417	+		DDA3937_RS21395	0.88	+2.1
4,873,418	-		DDA3937_RS21395	0.88	-1.2
4,873,424	-		DDA3937_RS21395	0.89	-2.7
4,873,424	-		DDA3937_RS21395	0.89	-0.9
4,873,424	-		DDA3937_RS21395	0.89	-1.4
4,873,448	+				-1.7
4,873,448	+				+0.1
4,873,449	-				-2.2
4,873,477	-				+1.4
4,873,477	-				-3.4
4,873,615	+		DDA3937_RS21400	0.32	-0.5
4,873,616	-		DDA3937_RS21400	0.33	-2.1
4,873,638	+		DDA3937_RS21400	0.39	-0.8
4,873,638	+		DDA3937_RS21400	0.39	-2.8
4,873,638	+		DDA3937_RS21400	0.39	-2.9
4,873,638	+		DDA3937_RS21400	0.39	-1.9
4,873,638	+		DDA3937_RS21400	0.39	-0.7
4,873,639	-		DDA3937_RS21400	0.39	-2.6
4,873,639	-		DDA3937_RS21400	0.39	-1.6
4,873,639	-		DDA3937_RS21400	0.39	+1.4
4,873,639	-		DDA3937_RS21400	0.39	-2.4
4,873,639	-		DDA3937_RS21400	0.39	-1.7
4,873,680	+		DDA3937_RS21400	0.51	-0.8
4,873,736	-		DDA3937_RS21400	0.67	-2.5
4,873,738	+		DDA3937_RS21400	0.67	+0.4
4,873,739	-		DDA3937_RS21400	0.68	-1.0
4,873,752	-		DDA3937_RS21400	0.71	+0.2
4,873,760	-		DDA3937_RS21400	0.73	-1.9
4,873,772	+		DDA3937_RS21400	0.77	-0.2
4,873,773	-		DDA3937_RS21400	0.77	-2.5
4,873,774	+		DDA3937_RS21400	0.77	+0.2
4,873,774	+		DDA3937_RS21400	0.77	+0.1
4,873,774	+		DDA3937_RS21400	0.77	-1.7
4,873,774	+		DDA3937_RS21400	0.77	-1.1
4,873,774	+		DDA3937_RS21400	0.77	-2.7
4,873,774	+		DDA3937_RS21400	0.77	-3.0
4,873,774	+		DDA3937_RS21400	0.77	-0.4
4,873,848	+				-1.2
4,873,854	+				-2.7
4,873,854	+				-1.3
4,873,855	-				-2.4
4,873,857	+				+1.6
4,873,857	+				+1.6
4,873,857	+				-0.7
4,873,858	-				-0.5
4,873,858	-				-1.1
4,873,858	-				+1.2
4,873,858	-				-1.0
4,873,976	-		DDA3937_RS21405	0.15	+1.9
4,873,976	-		DDA3937_RS21405	0.15	-1.1
4,874,023	+		DDA3937_RS21405	0.22	+1.4
4,874,023	+		DDA3937_RS21405	0.22	+0.6
4,874,024	-		DDA3937_RS21405	0.23	+0.5
4,874,024	-		DDA3937_RS21405	0.23	-1.8
4,874,024	-		DDA3937_RS21405	0.23	+1.4
4,874,024	-		DDA3937_RS21405	0.23	+0.5
4,874,047	+		DDA3937_RS21405	0.26	-2.6
4,874,047	+		DDA3937_RS21405	0.26	-2.0
4,874,047	+		DDA3937_RS21405	0.26	-2.2
4,874,047	+		DDA3937_RS21405	0.26	-1.9
4,874,047	+		DDA3937_RS21405	0.26	+0.6
4,874,048	-		DDA3937_RS21405	0.26	+1.5
4,874,048	-		DDA3937_RS21405	0.26	-1.0
4,874,048	-		DDA3937_RS21405	0.26	-2.7
4,874,048	-		DDA3937_RS21405	0.26	+0.6
4,874,079	-		DDA3937_RS21405	0.31	+1.4
4,874,099	-		DDA3937_RS21405	0.34	-1.6
4,874,114	+		DDA3937_RS21405	0.36	-3.5
4,874,114	+		DDA3937_RS21405	0.36	-1.4
4,874,114	+		DDA3937_RS21405	0.36	-1.5
4,874,114	+		DDA3937_RS21405	0.36	+0.6
4,874,115	-		DDA3937_RS21405	0.36	-2.1
4,874,115	-		DDA3937_RS21405	0.36	+0.6
4,874,115	-				+1.6
4,874,115	-		DDA3937_RS21405	0.36	+1.6
4,874,115	-		DDA3937_RS21405	0.36	-3.3
4,874,159	+		DDA3937_RS21405	0.43	-1.3
4,874,160	-		DDA3937_RS21405	0.43	-3.2
4,874,175	+		DDA3937_RS21405	0.45	-1.2
4,874,175	+		DDA3937_RS21405	0.45	-0.6
4,874,175	+		DDA3937_RS21405	0.45	-2.9
4,874,175	+		DDA3937_RS21405	0.45	-1.2
4,874,175	+		DDA3937_RS21405	0.45	-1.2
4,874,176	-		DDA3937_RS21405	0.45	-0.6
4,874,176	-		DDA3937_RS21405	0.45	-3.0
4,874,187	-		DDA3937_RS21405	0.47	-1.6
4,874,187	-		DDA3937_RS21405	0.47	-4.2
4,874,194	+		DDA3937_RS21405	0.48	+0.4
4,874,195	-		DDA3937_RS21405	0.48	+0.8
4,874,208	+		DDA3937_RS21405	0.50	+3.4
4,874,209	-		DDA3937_RS21405	0.50	-3.3
4,874,209	-		DDA3937_RS21405	0.50	-0.7
4,874,209	-		DDA3937_RS21405	0.50	+1.1
4,874,209	-		DDA3937_RS21405	0.50	+1.4
4,874,229	-		DDA3937_RS21405	0.53	+0.8
4,874,229	-		DDA3937_RS21405	0.53	+0.5
4,874,231	+		DDA3937_RS21405	0.53	-1.4
4,874,231	+		DDA3937_RS21405	0.53	+1.9
4,874,231	+		DDA3937_RS21405	0.53	-2.7
4,874,231	+		DDA3937_RS21405	0.53	-1.4
4,874,231	+		DDA3937_RS21405	0.53	+1.0
4,874,232	-		DDA3937_RS21405	0.54	-1.0
4,874,232	-		DDA3937_RS21405	0.54	+1.1
4,874,299	-		DDA3937_RS21405	0.64	-0.1
4,874,343	+		DDA3937_RS21405	0.70	-1.7
4,874,344	-		DDA3937_RS21405	0.70	-0.3
4,874,344	-		DDA3937_RS21405	0.70	-1.4
4,874,369	+		DDA3937_RS21405	0.74	-2.0
4,874,369	+		DDA3937_RS21405	0.74	+1.7
4,874,369	+		DDA3937_RS21405	0.74	-2.6
4,874,369	+		DDA3937_RS21405	0.74	-0.7
4,874,370	-		DDA3937_RS21405	0.74	-0.7
4,874,371	+		DDA3937_RS21405	0.74	+0.8
4,874,372	-		DDA3937_RS21405	0.74	+1.6
4,874,372	-		DDA3937_RS21405	0.74	-1.1
4,874,372	-		DDA3937_RS21405	0.74	+1.0
4,874,372	-				+0.0
4,874,372	-		DDA3937_RS21405	0.74	+1.3
4,874,372	-		DDA3937_RS21405	0.74	-2.2
4,874,372	-		DDA3937_RS21405	0.74	-0.9
4,874,425	+		DDA3937_RS21405	0.82	-0.5
4,874,437	+		DDA3937_RS21405	0.84	-2.5
4,874,438	-		DDA3937_RS21405	0.84	-2.4
4,874,438	-		DDA3937_RS21405	0.84	-1.6
4,874,438	-		DDA3937_RS21405	0.84	-0.1
4,874,450	+		DDA3937_RS21405	0.86	+0.6
4,874,450	+		DDA3937_RS21405	0.86	-1.9
4,874,450	+		DDA3937_RS21405	0.86	+0.0
4,874,451	-				+4.2
4,874,466	-		DDA3937_RS21405	0.88	-1.0