Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21245

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,836,521	-		DDA3937_RS21240	0.44	-1.6
4,836,521	-		DDA3937_RS21240	0.44	-1.4
4,836,563	-		DDA3937_RS21240	0.47	+0.6
4,836,565	+		DDA3937_RS21240	0.48	+0.4
4,836,606	+		DDA3937_RS21240	0.50	+0.9
4,836,606	+		DDA3937_RS21240	0.50	-2.5
4,836,628	+		DDA3937_RS21240	0.52	+0.8
4,836,628	+		DDA3937_RS21240	0.52	+0.5
4,836,869	+		DDA3937_RS21240	0.69	-0.6
4,836,869	+		DDA3937_RS21240	0.69	+3.6
4,836,870	-		DDA3937_RS21240	0.69	+0.3
4,836,986	+		DDA3937_RS21240	0.77	-0.2
4,836,987	-		DDA3937_RS21240	0.77	+0.2
4,836,987	-		DDA3937_RS21240	0.77	-1.6
4,836,987	-		DDA3937_RS21240	0.77	+1.4
4,836,991	+		DDA3937_RS21240	0.77	+2.3
4,837,005	+		DDA3937_RS21240	0.78	-0.7
4,837,005	+		DDA3937_RS21240	0.78	+1.8
4,837,005	+		DDA3937_RS21240	0.78	+2.0
4,837,005	+		DDA3937_RS21240	0.78	+1.4
4,837,006	-		DDA3937_RS21240	0.79	-1.1
4,837,006	-		DDA3937_RS21240	0.79	+1.4
4,837,007	+		DDA3937_RS21240	0.79	+0.4
4,837,007	+		DDA3937_RS21240	0.79	+0.3
4,837,007	+		DDA3937_RS21240	0.79	-3.7
4,837,008	-		DDA3937_RS21240	0.79	-0.2
4,837,008	-		DDA3937_RS21240	0.79	-2.0
4,837,008	-		DDA3937_RS21240	0.79	-2.5
4,837,011	+		DDA3937_RS21240	0.79	-1.0
4,837,011	+		DDA3937_RS21240	0.79	-0.6
4,837,011	+		DDA3937_RS21240	0.79	-0.7
4,837,012	-		DDA3937_RS21240	0.79	-1.7
4,837,012	-		DDA3937_RS21240	0.79	-1.4
4,837,012	-		DDA3937_RS21240	0.79	-0.3
4,837,012	-		DDA3937_RS21240	0.79	-2.4
4,837,021	-		DDA3937_RS21240	0.80	+0.0
4,837,059	+		DDA3937_RS21240	0.82	+0.1
4,837,060	-		DDA3937_RS21240	0.82	+0.2
4,837,060	-		DDA3937_RS21240	0.82	-0.9
4,837,060	-		DDA3937_RS21240	0.82	+1.1
4,837,117	+		DDA3937_RS21240	0.86	+0.2
4,837,117	+		DDA3937_RS21240	0.86	-1.6
4,837,117	+		DDA3937_RS21240	0.86	-1.2
4,837,118	-		DDA3937_RS21240	0.86	+0.1
4,837,127	+		DDA3937_RS21240	0.87	+2.7
4,837,161	+		DDA3937_RS21240	0.89	-1.2
4,837,200	+				-1.4
4,837,200	+				-1.7
4,837,234	+				+1.0
4,837,235	-				+0.5
4,837,235	-				-2.9
4,837,235	-				+0.6
4,837,235	-				-1.0
4,837,306	-				+1.8
4,837,306	-				+0.8
4,837,314	+				+0.3
4,837,314	+				+0.5
4,837,315	-				-2.6
4,837,315	-				-3.8
4,837,334	-				-1.6
4,837,351	-				-1.4
4,837,365	-				-2.3
4,837,377	+				-1.7
4,837,377	+				-1.6
4,837,377	+				+0.8
4,837,377	+				-2.0
4,837,377	+				-0.9
4,837,377	+				+0.4
4,837,377	+				-0.7
4,837,377	+				-2.6
4,837,378	-				+1.3
4,837,378	-				-0.1
4,837,378	-				+1.2
4,837,378	-				+0.9
4,837,617	+		DDA3937_RS21245	0.16	+3.5
4,837,617	+		DDA3937_RS21245	0.16	-1.2
4,837,617	+		DDA3937_RS21245	0.16	-3.4
4,837,617	+		DDA3937_RS21245	0.16	-1.0
4,837,618	-		DDA3937_RS21245	0.16	-0.6
4,837,618	-		DDA3937_RS21245	0.16	+4.2
4,837,618	-		DDA3937_RS21245	0.16	-0.4
4,837,639	+		DDA3937_RS21245	0.18	+3.5
4,837,639	+		DDA3937_RS21245	0.18	+2.8
4,837,639	+		DDA3937_RS21245	0.18	+0.9
4,837,639	+		DDA3937_RS21245	0.18	-0.6
4,837,639	+		DDA3937_RS21245	0.18	-1.6
4,837,639	+		DDA3937_RS21245	0.18	+2.0
4,837,639	+		DDA3937_RS21245	0.18	+1.6
4,837,639	+		DDA3937_RS21245	0.18	+2.3
4,837,640	-		DDA3937_RS21245	0.18	+2.4
4,837,640	-		DDA3937_RS21245	0.18	+2.4
4,837,640	-		DDA3937_RS21245	0.18	+2.8
4,837,640	-		DDA3937_RS21245	0.18	+2.7
4,837,640	-		DDA3937_RS21245	0.18	+2.9
4,837,640	-		DDA3937_RS21245	0.18	+2.7
4,837,641	+		DDA3937_RS21245	0.18	+0.4
4,837,642	-		DDA3937_RS21245	0.18	+0.0
4,837,642	-		DDA3937_RS21245	0.18	+0.6
4,837,642	-		DDA3937_RS21245	0.18	+2.2
4,837,642	-		DDA3937_RS21245	0.18	+2.2
4,837,642	-		DDA3937_RS21245	0.18	+1.4
4,837,642	-		DDA3937_RS21245	0.18	+2.2
4,837,642	-		DDA3937_RS21245	0.18	-0.6
4,837,643	+		DDA3937_RS21245	0.18	+1.4
4,837,643	+		DDA3937_RS21245	0.18	+3.7
4,837,643	+		DDA3937_RS21245	0.18	-1.2
4,837,644	-		DDA3937_RS21245	0.18	+2.1
4,837,644	-		DDA3937_RS21245	0.18	-0.7
4,837,857	+		DDA3937_RS21245	0.34	+1.9
4,837,857	+		DDA3937_RS21245	0.34	-0.7
4,837,857	+		DDA3937_RS21245	0.34	-0.7
4,837,858	-		DDA3937_RS21245	0.34	+3.2
4,837,888	+		DDA3937_RS21245	0.36	+2.3
4,837,903	-		DDA3937_RS21245	0.37	+1.2
4,838,065	+		DDA3937_RS21245	0.49	-0.4
4,838,074	+		DDA3937_RS21245	0.50	-1.4
4,838,222	-		DDA3937_RS21245	0.61	-0.9
4,838,223	+		DDA3937_RS21245	0.61	-1.2
4,838,295	+		DDA3937_RS21245	0.66	+0.1
4,838,457	+		DDA3937_RS21245	0.78	+0.6
4,838,458	-		DDA3937_RS21245	0.78	-3.3
4,838,458	-		DDA3937_RS21245	0.78	+0.6
4,838,458	-		DDA3937_RS21245	0.78	+0.7
4,838,458	-		DDA3937_RS21245	0.78	+0.0
4,838,481	+		DDA3937_RS21245	0.80	-1.1
4,838,506	+		DDA3937_RS21245	0.82	+2.0
4,838,506	+		DDA3937_RS21245	0.82	+0.6
4,838,506	+		DDA3937_RS21245	0.82	+1.7
4,838,507	-		DDA3937_RS21245	0.82	-1.2
4,838,515	+		DDA3937_RS21245	0.82	+2.1
4,838,557	-				+0.6
4,838,676	+				+1.6
4,838,676	+				+0.9
4,838,676	+				+2.3
4,838,733	+				+2.2
4,838,733	+				-0.4
4,838,739	+				+2.5
4,838,740	-				-1.4
4,838,774	+				+1.9
4,838,777	-				+0.7
4,838,793	+				+0.0
4,838,794	-				+3.2
4,838,794	-				-1.0
4,838,794	-				+1.8
4,838,797	+				+2.2
4,838,797	+				-1.2
4,838,798	-				-2.2
4,838,798	-				+0.0
4,838,798	-				-1.1
4,838,844	+				+3.2
4,838,845	-				-1.0
4,838,893	+				+1.0
4,838,893	+				+2.4
4,838,893	+				-1.0
4,838,893	+				+0.3
4,838,893	+				+0.6
4,838,893	+				+0.1
4,838,894	-				+2.5
4,838,894	-				+0.9
4,838,894	-				-0.7
4,838,894	-				+1.6
4,838,894	-				+0.0
4,838,894	-				+1.3
4,838,894	-				+1.5
4,838,894	-				+2.2
4,838,923	+				-0.1
4,838,923	+				+0.4
4,838,924	-				-3.9
4,838,924	-				-2.3
4,838,924	-				-3.8
4,838,924	-				+2.2
4,838,924	-				+2.5
4,838,924	-				+1.9
4,838,924	-				-0.1
4,838,925	+				-1.0
4,838,925	+				+0.6
4,838,925	+				-2.3
4,838,926	-				-0.8
4,838,926	-				+0.5
4,838,939	+				+0.3
4,838,939	+				-0.7
4,838,940	-				+1.3
4,838,941	+				+0.8
4,838,941	+				-2.0
4,838,941	+				-0.3
4,838,941	+				+2.4
4,838,941	+				-2.7
4,838,942	-				-0.3
4,838,942	-				-2.1
4,839,003	+				+2.8
4,839,003	+				+0.2
4,839,003	+				+1.2
4,839,004	-				-2.6
4,839,004	-				-3.0
4,839,004	-				-2.1
4,839,004	-				-1.6
4,839,004	-				+0.4
4,839,055	+				+0.5
4,839,055	+				-0.3
4,839,056	-				-2.9
4,839,056	-				-2.6
4,839,056	-				+0.0
4,839,152	+				+1.0
4,839,225	-		DDA3937_RS21250	0.13	+0.6
4,839,225	-		DDA3937_RS21250	0.13	-1.4
4,839,372	+		DDA3937_RS21250	0.30	-0.5
4,839,373	-		DDA3937_RS21250	0.30	+1.1
4,839,413	+		DDA3937_RS21250	0.34	-0.0
4,839,413	+		DDA3937_RS21250	0.34	+0.0
4,839,414	-		DDA3937_RS21250	0.34	-0.9
4,839,414	-		DDA3937_RS21250	0.34	+1.6
4,839,414	-				+1.3
4,839,619	-		DDA3937_RS21250	0.57	-3.6
4,839,631	+		DDA3937_RS21250	0.58	-3.0
4,839,687	+				+1.0
4,839,688	-		DDA3937_RS21250	0.64	-1.6
4,839,688	-		DDA3937_RS21250	0.64	+0.8
4,839,688	-		DDA3937_RS21250	0.64	-1.7