Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21045 and DDA3937_RS21050 are separated by 338 nucleotides DDA3937_RS21050 and DDA3937_RS21055 are separated by 95 nucleotides
DDA3937_RS21045: DDA3937_RS21045 - ROK family transcriptional regulator, at 4,789,273 to 4,790,472
_RS21045
DDA3937_RS21050: DDA3937_RS21050 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 4,790,811 to 4,791,920
_RS21050
DDA3937_RS21055: DDA3937_RS21055 - glycine--tRNA ligase subunit beta, at 4,792,016 to 4,794,085
_RS21055
Position (kb)
4790
4791
4792 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4789.873 kb on + strand, within DDA3937_RS21045 at 4789.950 kb on - strand, within DDA3937_RS21045 at 4789.950 kb on - strand, within DDA3937_RS21045 at 4790.002 kb on + strand, within DDA3937_RS21045 at 4790.003 kb on - strand, within DDA3937_RS21045 at 4790.026 kb on + strand, within DDA3937_RS21045 at 4790.027 kb on - strand, within DDA3937_RS21045 at 4790.027 kb on - strand, within DDA3937_RS21045 at 4790.027 kb on - strand, within DDA3937_RS21045 at 4790.027 kb on - strand, within DDA3937_RS21045 at 4790.028 kb on + strand, within DDA3937_RS21045 at 4790.028 kb on + strand, within DDA3937_RS21045 at 4790.028 kb on + strand, within DDA3937_RS21045 at 4790.028 kb on + strand, within DDA3937_RS21045 at 4790.028 kb on + strand, within DDA3937_RS21045 at 4790.028 kb on + strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.029 kb on - strand, within DDA3937_RS21045 at 4790.042 kb on + strand, within DDA3937_RS21045 at 4790.042 kb on + strand, within DDA3937_RS21045 at 4790.042 kb on + strand, within DDA3937_RS21045 at 4790.066 kb on + strand, within DDA3937_RS21045 at 4790.121 kb on + strand, within DDA3937_RS21045 at 4790.141 kb on + strand, within DDA3937_RS21045 at 4790.141 kb on + strand, within DDA3937_RS21045 at 4790.141 kb on + strand, within DDA3937_RS21045 at 4790.142 kb on - strand, within DDA3937_RS21045 at 4790.142 kb on - strand, within DDA3937_RS21045 at 4790.211 kb on - strand, within DDA3937_RS21045 at 4790.211 kb on - strand, within DDA3937_RS21045 at 4790.254 kb on - strand, within DDA3937_RS21045 at 4790.254 kb on - strand, within DDA3937_RS21045 at 4790.268 kb on + strand, within DDA3937_RS21045 at 4790.268 kb on + strand, within DDA3937_RS21045 at 4790.268 kb on + strand, within DDA3937_RS21045 at 4790.269 kb on - strand, within DDA3937_RS21045 at 4790.269 kb on - strand, within DDA3937_RS21045 at 4790.269 kb on - strand, within DDA3937_RS21045 at 4790.269 kb on - strand, within DDA3937_RS21045 at 4790.416 kb on + strand at 4790.476 kb on + strand at 4790.562 kb on + strand at 4790.562 kb on + strand at 4790.562 kb on + strand at 4790.562 kb on + strand at 4790.563 kb on - strand at 4790.563 kb on - strand at 4790.564 kb on + strand at 4790.565 kb on - strand at 4790.565 kb on - strand at 4790.822 kb on + strand at 4790.822 kb on + strand at 4790.823 kb on - strand at 4790.823 kb on - strand at 4790.823 kb on - strand at 4790.823 kb on - strand at 4790.823 kb on - strand at 4790.834 kb on + strand at 4791.122 kb on + strand, within DDA3937_RS21050 at 4791.122 kb on + strand, within DDA3937_RS21050 at 4791.122 kb on + strand, within DDA3937_RS21050 at 4791.122 kb on + strand, within DDA3937_RS21050 at 4791.123 kb on - strand, within DDA3937_RS21050 at 4791.123 kb on - strand, within DDA3937_RS21050 at 4791.123 kb on - strand, within DDA3937_RS21050 at 4791.123 kb on - strand, within DDA3937_RS21050 at 4791.173 kb on - strand, within DDA3937_RS21050 at 4791.173 kb on - strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.178 kb on + strand, within DDA3937_RS21050 at 4791.179 kb on - strand, within DDA3937_RS21050 at 4791.179 kb on - strand, within DDA3937_RS21050 at 4791.179 kb on - strand, within DDA3937_RS21050 at 4791.187 kb on - strand, within DDA3937_RS21050 at 4791.256 kb on + strand, within DDA3937_RS21050 at 4791.256 kb on + strand, within DDA3937_RS21050 at 4791.257 kb on - strand, within DDA3937_RS21050 at 4791.257 kb on - strand, within DDA3937_RS21050 at 4791.257 kb on - strand, within DDA3937_RS21050 at 4791.257 kb on - strand, within DDA3937_RS21050 at 4791.257 kb on - strand, within DDA3937_RS21050 at 4791.365 kb on + strand, within DDA3937_RS21050 at 4791.365 kb on + strand, within DDA3937_RS21050 at 4791.366 kb on - strand, within DDA3937_RS21050 at 4791.375 kb on + strand, within DDA3937_RS21050 at 4791.375 kb on + strand, within DDA3937_RS21050 at 4791.375 kb on + strand, within DDA3937_RS21050 at 4791.375 kb on + strand, within DDA3937_RS21050 at 4791.375 kb on + strand, within DDA3937_RS21050 at 4791.375 kb on + strand, within DDA3937_RS21050 at 4791.376 kb on - strand, within DDA3937_RS21050 at 4791.376 kb on - strand, within DDA3937_RS21050 at 4791.376 kb on - strand, within DDA3937_RS21050 at 4791.394 kb on + strand, within DDA3937_RS21050 at 4791.394 kb on + strand, within DDA3937_RS21050 at 4791.394 kb on + strand, within DDA3937_RS21050 at 4791.394 kb on + strand, within DDA3937_RS21050 at 4791.395 kb on - strand, within DDA3937_RS21050 at 4791.395 kb on - strand, within DDA3937_RS21050 at 4791.395 kb on - strand, within DDA3937_RS21050 at 4791.395 kb on - strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.556 kb on + strand, within DDA3937_RS21050 at 4791.557 kb on - strand, within DDA3937_RS21050 at 4791.557 kb on - strand, within DDA3937_RS21050 at 4791.557 kb on - strand, within DDA3937_RS21050 at 4791.557 kb on - strand, within DDA3937_RS21050 at 4791.578 kb on + strand, within DDA3937_RS21050 at 4791.581 kb on + strand, within DDA3937_RS21050 at 4791.581 kb on + strand, within DDA3937_RS21050 at 4791.582 kb on - strand, within DDA3937_RS21050 at 4791.679 kb on + strand, within DDA3937_RS21050 at 4791.679 kb on + strand, within DDA3937_RS21050 at 4791.679 kb on + strand, within DDA3937_RS21050 at 4791.747 kb on + strand, within DDA3937_RS21050 at 4791.747 kb on + strand, within DDA3937_RS21050 at 4791.747 kb on + strand, within DDA3937_RS21050 at 4791.747 kb on + strand, within DDA3937_RS21050 at 4791.747 kb on + strand, within DDA3937_RS21050 at 4791.747 kb on + strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.748 kb on - strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.749 kb on + strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.750 kb on - strand, within DDA3937_RS21050 at 4791.753 kb on + strand, within DDA3937_RS21050 at 4791.753 kb on + strand, within DDA3937_RS21050 at 4791.753 kb on + strand, within DDA3937_RS21050 at 4791.753 kb on + strand, within DDA3937_RS21050 at 4791.753 kb on + strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.754 kb on - strand, within DDA3937_RS21050 at 4791.761 kb on + strand, within DDA3937_RS21050 at 4791.761 kb on + strand, within DDA3937_RS21050 at 4791.761 kb on + strand, within DDA3937_RS21050 at 4791.762 kb on - strand at 4791.762 kb on - strand, within DDA3937_RS21050 at 4791.791 kb on - strand, within DDA3937_RS21050 at 4791.791 kb on - strand, within DDA3937_RS21050 at 4791.791 kb on - strand, within DDA3937_RS21050 at 4791.984 kb on + strand at 4791.984 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,789,873 + DDA3937_RS21045 0.50 -2.2 4,789,950 - DDA3937_RS21045 0.56 -2.9 4,789,950 - DDA3937_RS21045 0.56 -3.3 4,790,002 + DDA3937_RS21045 0.61 -3.9 4,790,003 - DDA3937_RS21045 0.61 -2.2 4,790,026 + DDA3937_RS21045 0.63 -2.4 4,790,027 - DDA3937_RS21045 0.63 -1.4 4,790,027 - DDA3937_RS21045 0.63 -1.3 4,790,027 - DDA3937_RS21045 0.63 -2.9 4,790,027 - DDA3937_RS21045 0.63 -2.0 4,790,028 + DDA3937_RS21045 0.63 -2.6 4,790,028 + DDA3937_RS21045 0.63 -1.9 4,790,028 + DDA3937_RS21045 0.63 -1.6 4,790,028 + DDA3937_RS21045 0.63 -1.7 4,790,028 + DDA3937_RS21045 0.63 +0.4 4,790,028 + DDA3937_RS21045 0.63 -1.9 4,790,029 - DDA3937_RS21045 0.63 -1.2 4,790,029 - DDA3937_RS21045 0.63 -3.0 4,790,029 - DDA3937_RS21045 0.63 -2.7 4,790,029 - DDA3937_RS21045 0.63 -2.6 4,790,029 - DDA3937_RS21045 0.63 -2.3 4,790,029 - DDA3937_RS21045 0.63 -1.7 4,790,029 - DDA3937_RS21045 0.63 -2.1 4,790,042 + DDA3937_RS21045 0.64 -4.4 4,790,042 + DDA3937_RS21045 0.64 -0.6 4,790,042 + DDA3937_RS21045 0.64 -0.9 4,790,066 + DDA3937_RS21045 0.66 -2.3 4,790,121 + DDA3937_RS21045 0.71 -1.6 4,790,141 + DDA3937_RS21045 0.72 -0.9 4,790,141 + DDA3937_RS21045 0.72 -1.5 4,790,141 + DDA3937_RS21045 0.72 -0.4 4,790,142 - DDA3937_RS21045 0.72 -1.7 4,790,142 - DDA3937_RS21045 0.72 -3.6 4,790,211 - DDA3937_RS21045 0.78 -3.7 4,790,211 - DDA3937_RS21045 0.78 -0.7 4,790,254 - DDA3937_RS21045 0.82 -1.1 4,790,254 - DDA3937_RS21045 0.82 +1.5 4,790,268 + DDA3937_RS21045 0.83 -2.2 4,790,268 + DDA3937_RS21045 0.83 -2.0 4,790,268 + DDA3937_RS21045 0.83 -2.2 4,790,269 - DDA3937_RS21045 0.83 -1.5 4,790,269 - DDA3937_RS21045 0.83 -2.9 4,790,269 - DDA3937_RS21045 0.83 -1.5 4,790,269 - DDA3937_RS21045 0.83 -1.7 4,790,416 + -0.9 4,790,476 + +2.4 4,790,562 + +0.0 4,790,562 + +0.2 4,790,562 + -3.0 4,790,562 + -2.7 4,790,563 - +3.2 4,790,563 - -1.7 4,790,564 + -2.0 4,790,565 - -0.4 4,790,565 - -0.4 4,790,822 + -0.5 4,790,822 + +1.1 4,790,823 - -2.5 4,790,823 - -0.6 4,790,823 - +1.2 4,790,823 - -1.6 4,790,823 - +1.2 4,790,834 + -0.0 4,791,122 + DDA3937_RS21050 0.28 +0.3 4,791,122 + DDA3937_RS21050 0.28 -0.2 4,791,122 + DDA3937_RS21050 0.28 -0.2 4,791,122 + DDA3937_RS21050 0.28 -0.3 4,791,123 - DDA3937_RS21050 0.28 -0.1 4,791,123 - DDA3937_RS21050 0.28 +0.8 4,791,123 - DDA3937_RS21050 0.28 -1.8 4,791,123 - DDA3937_RS21050 0.28 +0.4 4,791,173 - DDA3937_RS21050 0.33 +0.6 4,791,173 - DDA3937_RS21050 0.33 +1.2 4,791,178 + DDA3937_RS21050 0.33 +0.7 4,791,178 + DDA3937_RS21050 0.33 -0.4 4,791,178 + DDA3937_RS21050 0.33 +1.4 4,791,178 + DDA3937_RS21050 0.33 -0.9 4,791,178 + DDA3937_RS21050 0.33 +0.3 4,791,178 + DDA3937_RS21050 0.33 -1.4 4,791,178 + DDA3937_RS21050 0.33 +0.3 4,791,178 + DDA3937_RS21050 0.33 -0.4 4,791,178 + DDA3937_RS21050 0.33 -1.9 4,791,179 - DDA3937_RS21050 0.33 -4.1 4,791,179 - DDA3937_RS21050 0.33 -1.9 4,791,179 - DDA3937_RS21050 0.33 -1.3 4,791,187 - DDA3937_RS21050 0.34 -2.8 4,791,256 + DDA3937_RS21050 0.40 +1.6 4,791,256 + DDA3937_RS21050 0.40 +1.4 4,791,257 - DDA3937_RS21050 0.40 -1.9 4,791,257 - DDA3937_RS21050 0.40 +0.5 4,791,257 - DDA3937_RS21050 0.40 -0.2 4,791,257 - DDA3937_RS21050 0.40 +1.5 4,791,257 - DDA3937_RS21050 0.40 -1.0 4,791,365 + DDA3937_RS21050 0.50 +1.5 4,791,365 + DDA3937_RS21050 0.50 +1.2 4,791,366 - DDA3937_RS21050 0.50 +0.4 4,791,375 + DDA3937_RS21050 0.51 +1.3 4,791,375 + DDA3937_RS21050 0.51 -3.6 4,791,375 + DDA3937_RS21050 0.51 +0.7 4,791,375 + DDA3937_RS21050 0.51 -3.3 4,791,375 + DDA3937_RS21050 0.51 +0.4 4,791,375 + DDA3937_RS21050 0.51 -1.9 4,791,376 - DDA3937_RS21050 0.51 +1.5 4,791,376 - DDA3937_RS21050 0.51 +0.6 4,791,376 - DDA3937_RS21050 0.51 -1.9 4,791,394 + DDA3937_RS21050 0.53 +0.1 4,791,394 + DDA3937_RS21050 0.53 +1.3 4,791,394 + DDA3937_RS21050 0.53 +1.5 4,791,394 + DDA3937_RS21050 0.53 -2.3 4,791,395 - DDA3937_RS21050 0.53 -1.0 4,791,395 - DDA3937_RS21050 0.53 -1.6 4,791,395 - DDA3937_RS21050 0.53 +2.3 4,791,395 - DDA3937_RS21050 0.53 +1.9 4,791,556 + DDA3937_RS21050 0.67 -0.1 4,791,556 + DDA3937_RS21050 0.67 -1.7 4,791,556 + DDA3937_RS21050 0.67 -0.9 4,791,556 + DDA3937_RS21050 0.67 -0.7 4,791,556 + DDA3937_RS21050 0.67 -1.4 4,791,556 + DDA3937_RS21050 0.67 +0.5 4,791,556 + DDA3937_RS21050 0.67 -0.4 4,791,557 - DDA3937_RS21050 0.67 -0.7 4,791,557 - DDA3937_RS21050 0.67 +0.0 4,791,557 - DDA3937_RS21050 0.67 -3.0 4,791,557 - DDA3937_RS21050 0.67 +2.3 4,791,578 + DDA3937_RS21050 0.69 -1.7 4,791,581 + DDA3937_RS21050 0.69 -0.8 4,791,581 + DDA3937_RS21050 0.69 -0.1 4,791,582 - DDA3937_RS21050 0.69 -1.4 4,791,679 + DDA3937_RS21050 0.78 -1.6 4,791,679 + DDA3937_RS21050 0.78 +0.4 4,791,679 + DDA3937_RS21050 0.78 +1.7 4,791,747 + DDA3937_RS21050 0.84 -1.9 4,791,747 + DDA3937_RS21050 0.84 -1.0 4,791,747 + DDA3937_RS21050 0.84 +1.7 4,791,747 + DDA3937_RS21050 0.84 -2.4 4,791,747 + DDA3937_RS21050 0.84 +0.6 4,791,747 + DDA3937_RS21050 0.84 -1.7 4,791,748 - DDA3937_RS21050 0.84 +0.6 4,791,748 - DDA3937_RS21050 0.84 +0.7 4,791,748 - DDA3937_RS21050 0.84 +0.6 4,791,748 - DDA3937_RS21050 0.84 +0.3 4,791,748 - DDA3937_RS21050 0.84 +1.0 4,791,748 - DDA3937_RS21050 0.84 +1.0 4,791,748 - DDA3937_RS21050 0.84 +1.0 4,791,749 + DDA3937_RS21050 0.85 -1.2 4,791,749 + DDA3937_RS21050 0.85 -2.2 4,791,749 + DDA3937_RS21050 0.85 -2.4 4,791,749 + DDA3937_RS21050 0.85 -3.8 4,791,749 + DDA3937_RS21050 0.85 -1.6 4,791,749 + DDA3937_RS21050 0.85 +0.1 4,791,749 + DDA3937_RS21050 0.85 -2.0 4,791,749 + DDA3937_RS21050 0.85 +1.5 4,791,749 + DDA3937_RS21050 0.85 -1.1 4,791,749 + DDA3937_RS21050 0.85 +0.6 4,791,749 + DDA3937_RS21050 0.85 +0.4 4,791,750 - DDA3937_RS21050 0.85 +0.5 4,791,750 - DDA3937_RS21050 0.85 -0.8 4,791,750 - DDA3937_RS21050 0.85 -1.9 4,791,750 - DDA3937_RS21050 0.85 -2.3 4,791,750 - DDA3937_RS21050 0.85 -0.2 4,791,750 - DDA3937_RS21050 0.85 +1.7 4,791,750 - DDA3937_RS21050 0.85 -1.8 4,791,753 + DDA3937_RS21050 0.85 +0.7 4,791,753 + DDA3937_RS21050 0.85 +1.2 4,791,753 + DDA3937_RS21050 0.85 +0.0 4,791,753 + DDA3937_RS21050 0.85 +0.4 4,791,753 + DDA3937_RS21050 0.85 +1.3 4,791,754 - DDA3937_RS21050 0.85 -0.8 4,791,754 - DDA3937_RS21050 0.85 -2.3 4,791,754 - DDA3937_RS21050 0.85 -1.4 4,791,754 - DDA3937_RS21050 0.85 -1.5 4,791,754 - DDA3937_RS21050 0.85 -2.3 4,791,754 - DDA3937_RS21050 0.85 -0.8 4,791,754 - DDA3937_RS21050 0.85 +2.0 4,791,754 - DDA3937_RS21050 0.85 -1.6 4,791,754 - DDA3937_RS21050 0.85 +0.2 4,791,754 - DDA3937_RS21050 0.85 +2.8 4,791,754 - DDA3937_RS21050 0.85 +0.2 4,791,754 - DDA3937_RS21050 0.85 +1.3 4,791,754 - DDA3937_RS21050 0.85 +0.0 4,791,761 + DDA3937_RS21050 0.86 +0.1 4,791,761 + DDA3937_RS21050 0.86 -1.9 4,791,761 + DDA3937_RS21050 0.86 -2.0 4,791,762 - -1.2 4,791,762 - DDA3937_RS21050 0.86 +1.6 4,791,791 - DDA3937_RS21050 0.88 +0.9 4,791,791 - DDA3937_RS21050 0.88 +0.4 4,791,791 - DDA3937_RS21050 0.88 +1.9 4,791,984 + +1.1 4,791,984 + +0.2
Or see this region's nucleotide sequence