Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS22535 and DDA3937_RS20395 are separated by 110 nucleotides DDA3937_RS20395 and DDA3937_RS20400 are separated by 375 nucleotides
DDA3937_RS20385: DDA3937_RS20385 - HTH-type transcriptional regulator MetR, at 4,644,214 to 4,645,152
_RS20385
DDA3937_RS22535: DDA3937_RS22535 - DMT family transporter, at 4,645,055 to 4,645,954
_RS22535
DDA3937_RS20395: DDA3937_RS20395 - lipid IV(A) palmitoyltransferase PagP, at 4,646,065 to 4,646,667
_RS20395
DDA3937_RS20400: DDA3937_RS20400 - serine O-acetyltransferase, at 4,647,043 to 4,647,864
_RS20400
Position (kb) 4646
4647 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4645.150 kb on + strand at 4645.150 kb on + strand at 4645.150 kb on + strand at 4645.151 kb on - strand at 4645.249 kb on + strand, within DDA3937_RS22535 at 4645.250 kb on - strand, within DDA3937_RS22535 at 4645.284 kb on + strand, within DDA3937_RS22535 at 4645.285 kb on - strand, within DDA3937_RS22535 at 4645.285 kb on - strand, within DDA3937_RS22535 at 4645.285 kb on - strand, within DDA3937_RS22535 at 4645.299 kb on + strand, within DDA3937_RS22535 at 4645.299 kb on + strand, within DDA3937_RS22535 at 4645.300 kb on - strand, within DDA3937_RS22535 at 4645.425 kb on + strand, within DDA3937_RS22535 at 4645.425 kb on + strand, within DDA3937_RS22535 at 4645.480 kb on + strand, within DDA3937_RS22535 at 4645.480 kb on + strand, within DDA3937_RS22535 at 4645.480 kb on + strand, within DDA3937_RS22535 at 4645.480 kb on + strand, within DDA3937_RS22535 at 4645.480 kb on + strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.481 kb on - strand, within DDA3937_RS22535 at 4645.482 kb on + strand, within DDA3937_RS22535 at 4645.483 kb on - strand, within DDA3937_RS22535 at 4645.483 kb on - strand, within DDA3937_RS22535 at 4645.566 kb on + strand, within DDA3937_RS22535 at 4645.567 kb on - strand, within DDA3937_RS22535 at 4645.567 kb on - strand, within DDA3937_RS22535 at 4645.650 kb on + strand, within DDA3937_RS22535 at 4645.651 kb on - strand, within DDA3937_RS22535 at 4645.665 kb on + strand, within DDA3937_RS22535 at 4645.665 kb on + strand, within DDA3937_RS22535 at 4645.666 kb on - strand, within DDA3937_RS22535 at 4645.666 kb on - strand, within DDA3937_RS22535 at 4645.703 kb on + strand, within DDA3937_RS22535 at 4645.704 kb on - strand at 4645.713 kb on + strand, within DDA3937_RS22535 at 4645.714 kb on - strand, within DDA3937_RS22535 at 4645.719 kb on + strand, within DDA3937_RS22535 at 4645.719 kb on + strand, within DDA3937_RS22535 at 4645.720 kb on - strand, within DDA3937_RS22535 at 4645.720 kb on - strand, within DDA3937_RS22535 at 4645.723 kb on + strand, within DDA3937_RS22535 at 4645.723 kb on + strand, within DDA3937_RS22535 at 4645.723 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.740 kb on + strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.741 kb on - strand, within DDA3937_RS22535 at 4645.767 kb on - strand, within DDA3937_RS22535 at 4645.767 kb on - strand, within DDA3937_RS22535 at 4645.776 kb on + strand, within DDA3937_RS22535 at 4645.776 kb on + strand, within DDA3937_RS22535 at 4645.777 kb on - strand, within DDA3937_RS22535 at 4645.777 kb on - strand, within DDA3937_RS22535 at 4645.777 kb on - strand, within DDA3937_RS22535 at 4645.777 kb on - strand, within DDA3937_RS22535 at 4645.800 kb on + strand, within DDA3937_RS22535 at 4645.874 kb on - strand at 4645.893 kb on + strand at 4645.894 kb on - strand at 4645.894 kb on - strand at 4645.969 kb on + strand at 4645.969 kb on + strand at 4645.970 kb on - strand at 4645.970 kb on - strand at 4645.971 kb on + strand at 4645.971 kb on + strand at 4645.972 kb on - strand at 4645.978 kb on + strand at 4645.995 kb on + strand at 4645.995 kb on + strand at 4645.995 kb on + strand at 4645.995 kb on + strand at 4645.995 kb on + strand at 4645.995 kb on + strand at 4645.996 kb on - strand at 4646.004 kb on + strand at 4646.004 kb on + strand at 4646.005 kb on - strand at 4646.106 kb on + strand at 4646.106 kb on + strand at 4646.107 kb on - strand at 4646.109 kb on + strand at 4646.109 kb on + strand at 4646.109 kb on + strand at 4646.109 kb on + strand at 4646.110 kb on - strand at 4646.110 kb on - strand at 4646.124 kb on + strand at 4646.124 kb on + strand at 4646.124 kb on + strand at 4646.125 kb on - strand at 4646.125 kb on - strand at 4646.126 kb on + strand, within DDA3937_RS20395 at 4646.126 kb on + strand, within DDA3937_RS20395 at 4646.126 kb on + strand, within DDA3937_RS20395 at 4646.126 kb on + strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.127 kb on - strand, within DDA3937_RS20395 at 4646.154 kb on - strand, within DDA3937_RS20395 at 4646.195 kb on + strand, within DDA3937_RS20395 at 4646.195 kb on + strand, within DDA3937_RS20395 at 4646.195 kb on + strand, within DDA3937_RS20395 at 4646.214 kb on + strand, within DDA3937_RS20395 at 4646.214 kb on + strand, within DDA3937_RS20395 at 4646.214 kb on + strand, within DDA3937_RS20395 at 4646.229 kb on + strand, within DDA3937_RS20395 at 4646.229 kb on + strand, within DDA3937_RS20395 at 4646.343 kb on - strand, within DDA3937_RS20395 at 4646.387 kb on + strand, within DDA3937_RS20395 at 4646.388 kb on - strand, within DDA3937_RS20395 at 4646.414 kb on + strand, within DDA3937_RS20395 at 4646.415 kb on - strand, within DDA3937_RS20395 at 4646.415 kb on - strand, within DDA3937_RS20395 at 4646.438 kb on + strand, within DDA3937_RS20395 at 4646.474 kb on + strand, within DDA3937_RS20395 at 4646.474 kb on + strand, within DDA3937_RS20395 at 4646.474 kb on + strand, within DDA3937_RS20395 at 4646.474 kb on + strand, within DDA3937_RS20395 at 4646.474 kb on + strand, within DDA3937_RS20395 at 4646.474 kb on + strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.475 kb on - strand, within DDA3937_RS20395 at 4646.506 kb on - strand, within DDA3937_RS20395 at 4646.578 kb on - strand, within DDA3937_RS20395 at 4646.611 kb on - strand at 4646.668 kb on - strand at 4646.668 kb on - strand at 4646.677 kb on + strand at 4646.741 kb on + strand at 4646.742 kb on - strand at 4646.742 kb on - strand at 4646.745 kb on + strand at 4646.745 kb on + strand at 4646.745 kb on + strand at 4646.745 kb on + strand at 4646.745 kb on + strand at 4646.746 kb on - strand at 4646.746 kb on - strand at 4646.746 kb on - strand at 4646.746 kb on - strand at 4646.746 kb on - strand at 4646.778 kb on + strand at 4646.778 kb on + strand at 4646.779 kb on - strand at 4646.779 kb on - strand at 4646.779 kb on - strand at 4646.779 kb on - strand at 4646.779 kb on - strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.780 kb on + strand at 4646.781 kb on - strand at 4646.781 kb on - strand at 4646.781 kb on - strand at 4646.781 kb on - strand at 4646.781 kb on - strand at 4646.781 kb on - strand at 4646.804 kb on + strand at 4646.805 kb on - strand at 4646.805 kb on - strand at 4646.805 kb on - strand at 4646.810 kb on + strand at 4646.858 kb on + strand at 4646.858 kb on + strand at 4646.859 kb on - strand at 4646.859 kb on - strand at 4646.859 kb on - strand at 4646.865 kb on + strand at 4646.865 kb on + strand at 4646.866 kb on - strand at 4646.870 kb on + strand at 4646.871 kb on - strand at 4646.940 kb on + strand at 4646.941 kb on - strand at 4647.005 kb on + strand at 4647.005 kb on + strand at 4647.005 kb on + strand at 4647.005 kb on + strand at 4647.005 kb on + strand at 4647.006 kb on - strand at 4647.006 kb on - strand at 4647.006 kb on - strand at 4647.041 kb on + strand at 4647.042 kb on - strand at 4647.089 kb on + strand at 4647.089 kb on + strand at 4647.090 kb on - strand at 4647.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,645,150 + -1.5 4,645,150 + -1.3 4,645,150 + +2.4 4,645,151 - -1.8 4,645,249 + DDA3937_RS22535 0.22 -1.4 4,645,250 - DDA3937_RS22535 0.22 -0.8 4,645,284 + DDA3937_RS22535 0.25 -1.9 4,645,285 - DDA3937_RS22535 0.26 -1.0 4,645,285 - DDA3937_RS22535 0.26 -0.5 4,645,285 - DDA3937_RS22535 0.26 -0.3 4,645,299 + DDA3937_RS22535 0.27 -1.7 4,645,299 + DDA3937_RS22535 0.27 -2.8 4,645,300 - DDA3937_RS22535 0.27 -0.6 4,645,425 + DDA3937_RS22535 0.41 -1.1 4,645,425 + DDA3937_RS22535 0.41 -1.5 4,645,480 + DDA3937_RS22535 0.47 -1.8 4,645,480 + DDA3937_RS22535 0.47 +0.6 4,645,480 + DDA3937_RS22535 0.47 -0.5 4,645,480 + DDA3937_RS22535 0.47 -2.2 4,645,480 + DDA3937_RS22535 0.47 -0.7 4,645,481 - DDA3937_RS22535 0.47 -1.3 4,645,481 - DDA3937_RS22535 0.47 -0.1 4,645,481 - DDA3937_RS22535 0.47 -0.8 4,645,481 - DDA3937_RS22535 0.47 -0.6 4,645,481 - DDA3937_RS22535 0.47 -1.3 4,645,481 - DDA3937_RS22535 0.47 +0.2 4,645,481 - DDA3937_RS22535 0.47 +0.5 4,645,482 + DDA3937_RS22535 0.47 -1.8 4,645,483 - DDA3937_RS22535 0.48 -1.6 4,645,483 - DDA3937_RS22535 0.48 +0.7 4,645,566 + DDA3937_RS22535 0.57 -2.5 4,645,567 - DDA3937_RS22535 0.57 +0.8 4,645,567 - DDA3937_RS22535 0.57 +0.3 4,645,650 + DDA3937_RS22535 0.66 -1.2 4,645,651 - DDA3937_RS22535 0.66 +0.2 4,645,665 + DDA3937_RS22535 0.68 -0.6 4,645,665 + DDA3937_RS22535 0.68 +1.5 4,645,666 - DDA3937_RS22535 0.68 +1.0 4,645,666 - DDA3937_RS22535 0.68 -1.2 4,645,703 + DDA3937_RS22535 0.72 -1.5 4,645,704 - -0.0 4,645,713 + DDA3937_RS22535 0.73 +0.5 4,645,714 - DDA3937_RS22535 0.73 -2.7 4,645,719 + DDA3937_RS22535 0.74 -2.0 4,645,719 + DDA3937_RS22535 0.74 -1.0 4,645,720 - DDA3937_RS22535 0.74 -0.5 4,645,720 - DDA3937_RS22535 0.74 -1.5 4,645,723 + DDA3937_RS22535 0.74 -1.5 4,645,723 + DDA3937_RS22535 0.74 -2.0 4,645,723 + DDA3937_RS22535 0.74 -1.5 4,645,740 + DDA3937_RS22535 0.76 -0.7 4,645,740 + DDA3937_RS22535 0.76 -3.4 4,645,740 + DDA3937_RS22535 0.76 -2.8 4,645,740 + DDA3937_RS22535 0.76 +0.7 4,645,740 + DDA3937_RS22535 0.76 +0.5 4,645,740 + DDA3937_RS22535 0.76 -1.5 4,645,740 + DDA3937_RS22535 0.76 -2.7 4,645,740 + DDA3937_RS22535 0.76 -3.1 4,645,741 - DDA3937_RS22535 0.76 -1.4 4,645,741 - DDA3937_RS22535 0.76 +1.2 4,645,741 - DDA3937_RS22535 0.76 -0.4 4,645,741 - DDA3937_RS22535 0.76 -3.7 4,645,741 - DDA3937_RS22535 0.76 +2.2 4,645,741 - DDA3937_RS22535 0.76 -0.8 4,645,741 - DDA3937_RS22535 0.76 +0.0 4,645,767 - DDA3937_RS22535 0.79 -1.5 4,645,767 - DDA3937_RS22535 0.79 -1.6 4,645,776 + DDA3937_RS22535 0.80 +0.4 4,645,776 + DDA3937_RS22535 0.80 +0.8 4,645,777 - DDA3937_RS22535 0.80 -1.6 4,645,777 - DDA3937_RS22535 0.80 -2.0 4,645,777 - DDA3937_RS22535 0.80 -2.5 4,645,777 - DDA3937_RS22535 0.80 -2.2 4,645,800 + DDA3937_RS22535 0.83 -0.0 4,645,874 - -0.5 4,645,893 + -1.3 4,645,894 - -0.1 4,645,894 - -1.0 4,645,969 + +1.9 4,645,969 + -0.0 4,645,970 - +0.2 4,645,970 - -1.9 4,645,971 + -1.5 4,645,971 + +1.7 4,645,972 - -2.0 4,645,978 + +0.5 4,645,995 + -3.7 4,645,995 + -2.6 4,645,995 + -1.2 4,645,995 + +2.1 4,645,995 + +2.2 4,645,995 + -1.6 4,645,996 - -1.5 4,646,004 + -2.2 4,646,004 + -1.5 4,646,005 - -2.9 4,646,106 + +0.7 4,646,106 + -0.0 4,646,107 - -1.1 4,646,109 + +2.9 4,646,109 + +0.2 4,646,109 + -1.4 4,646,109 + +0.4 4,646,110 - -0.5 4,646,110 - +2.5 4,646,124 + +0.4 4,646,124 + +0.9 4,646,124 + -1.5 4,646,125 - -0.2 4,646,125 - -0.4 4,646,126 + DDA3937_RS20395 0.10 +0.1 4,646,126 + DDA3937_RS20395 0.10 -1.8 4,646,126 + DDA3937_RS20395 0.10 +0.6 4,646,126 + DDA3937_RS20395 0.10 -0.5 4,646,127 - DDA3937_RS20395 0.10 -1.7 4,646,127 - DDA3937_RS20395 0.10 -0.3 4,646,127 - DDA3937_RS20395 0.10 +0.5 4,646,127 - DDA3937_RS20395 0.10 +0.8 4,646,127 - DDA3937_RS20395 0.10 +1.0 4,646,127 - DDA3937_RS20395 0.10 +0.2 4,646,127 - DDA3937_RS20395 0.10 -1.3 4,646,127 - DDA3937_RS20395 0.10 -1.3 4,646,154 - DDA3937_RS20395 0.15 -1.3 4,646,195 + DDA3937_RS20395 0.22 -1.2 4,646,195 + DDA3937_RS20395 0.22 +0.4 4,646,195 + DDA3937_RS20395 0.22 -1.6 4,646,214 + DDA3937_RS20395 0.25 -1.8 4,646,214 + DDA3937_RS20395 0.25 -1.0 4,646,214 + DDA3937_RS20395 0.25 +0.6 4,646,229 + DDA3937_RS20395 0.27 -0.2 4,646,229 + DDA3937_RS20395 0.27 +0.1 4,646,343 - DDA3937_RS20395 0.46 -0.0 4,646,387 + DDA3937_RS20395 0.53 +0.2 4,646,388 - DDA3937_RS20395 0.54 -2.0 4,646,414 + DDA3937_RS20395 0.58 -1.0 4,646,415 - DDA3937_RS20395 0.58 -3.9 4,646,415 - DDA3937_RS20395 0.58 -2.4 4,646,438 + DDA3937_RS20395 0.62 +2.3 4,646,474 + DDA3937_RS20395 0.68 -1.5 4,646,474 + DDA3937_RS20395 0.68 +0.5 4,646,474 + DDA3937_RS20395 0.68 +1.3 4,646,474 + DDA3937_RS20395 0.68 +0.5 4,646,474 + DDA3937_RS20395 0.68 +1.8 4,646,474 + DDA3937_RS20395 0.68 +1.9 4,646,475 - DDA3937_RS20395 0.68 +1.0 4,646,475 - DDA3937_RS20395 0.68 +2.0 4,646,475 - DDA3937_RS20395 0.68 +1.0 4,646,475 - DDA3937_RS20395 0.68 +0.8 4,646,475 - DDA3937_RS20395 0.68 +3.1 4,646,475 - DDA3937_RS20395 0.68 -2.6 4,646,475 - DDA3937_RS20395 0.68 -2.8 4,646,475 - DDA3937_RS20395 0.68 -0.8 4,646,475 - DDA3937_RS20395 0.68 +1.1 4,646,506 - DDA3937_RS20395 0.73 +0.5 4,646,578 - DDA3937_RS20395 0.85 +1.2 4,646,611 - -1.3 4,646,668 - +0.3 4,646,668 - +1.2 4,646,677 + -1.9 4,646,741 + +0.2 4,646,742 - -2.3 4,646,742 - -1.7 4,646,745 + -2.5 4,646,745 + +0.7 4,646,745 + +0.4 4,646,745 + +1.9 4,646,745 + +0.8 4,646,746 - +1.0 4,646,746 - -2.0 4,646,746 - +0.5 4,646,746 - -1.0 4,646,746 - -0.6 4,646,778 + -2.7 4,646,778 + +0.2 4,646,779 - -0.4 4,646,779 - -2.8 4,646,779 - -0.5 4,646,779 - -0.8 4,646,779 - -0.8 4,646,780 + -1.9 4,646,780 + +0.8 4,646,780 + -0.6 4,646,780 + -0.1 4,646,780 + -1.0 4,646,780 + +0.8 4,646,780 + +2.2 4,646,780 + +0.0 4,646,780 + -1.8 4,646,780 + +1.5 4,646,781 - +2.2 4,646,781 - -1.3 4,646,781 - -4.0 4,646,781 - -1.3 4,646,781 - -1.3 4,646,781 - +0.5 4,646,804 + -0.5 4,646,805 - -1.5 4,646,805 - -1.5 4,646,805 - -1.6 4,646,810 + -1.8 4,646,858 + -1.8 4,646,858 + -3.8 4,646,859 - -0.5 4,646,859 - -0.4 4,646,859 - -2.5 4,646,865 + -1.9 4,646,865 + +0.7 4,646,866 - -2.2 4,646,870 + -1.8 4,646,871 - -0.0 4,646,940 + +0.9 4,646,941 - -0.8 4,647,005 + +0.0 4,647,005 + -1.5 4,647,005 + +0.3 4,647,005 + +1.5 4,647,005 + -1.2 4,647,006 - +1.5 4,647,006 - +0.4 4,647,006 - -4.2 4,647,041 + -2.4 4,647,042 - +0.4 4,647,089 + +2.5 4,647,089 + -0.3 4,647,090 - -0.9 4,647,099 + +1.0
Or see this region's nucleotide sequence