Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,638,824	+		DDA3937_RS20365	0.13	+1.2
4,638,825	-		DDA3937_RS20365	0.13	+0.3
4,638,964	+		DDA3937_RS20365	0.31	-1.8
4,638,964	+		DDA3937_RS20365	0.31	+0.6
4,639,032	-		DDA3937_RS20365	0.39	+0.3
4,639,109	-		DDA3937_RS20365	0.49	+2.9
4,639,138	+		DDA3937_RS20365	0.53	+0.1
4,639,139	-		DDA3937_RS20365	0.53	-2.5
4,639,151	+		DDA3937_RS20365	0.55	-0.5
4,639,152	-		DDA3937_RS20365	0.55	+2.0
4,639,152	-		DDA3937_RS20365	0.55	+0.5
4,639,250	-		DDA3937_RS20365	0.67	+0.3
4,639,306	+		DDA3937_RS20365	0.74	-2.0
4,639,489	-				+0.8
4,639,489	-				-0.5
4,639,489	-				+1.9
4,639,517	+				+0.6
4,639,517	+				-1.3
4,639,521	+				-3.9
4,639,521	+				-0.6
4,639,522	-				-0.6
4,639,522	-				-0.7
4,639,522	-				-2.4
4,639,533	+				+0.1
4,639,564	+				-2.0
4,639,565	-				-1.3
4,639,565	-				+0.3
4,639,578	+				+1.8
4,639,578	+				-0.8
4,639,578	+				+2.1
4,639,579	-				-0.1
4,639,579	-				+0.5
4,639,579	-				-0.0
4,639,579	-				+1.0
4,639,609	+				+0.1
4,639,615	+				-3.3
4,639,615	+				-1.0
4,639,647	+				+0.2
4,639,647	+				-1.5
4,639,647	+				-2.9
4,639,647	+				+0.1
4,639,647	+				-2.2
4,639,648	-				+3.2
4,639,648	-				+0.7
4,639,651	-				+1.7
4,639,651	-				-1.0
4,639,666	+				+1.9
4,639,666	+				-1.6
4,639,666	+				-0.7
4,639,667	-				-0.2
4,639,671	+				-3.5
4,639,671	+				+0.7
4,639,671	+				+0.1
4,639,672	-				-0.3
4,639,688	+				-2.4
4,639,688	+				+0.0
4,639,688	+				-0.5
4,639,688	+				+0.1
4,639,689	-				-2.3
4,639,689	-				+0.2
4,639,776	+				+1.2
4,639,776	+				+0.8
4,639,777	-				+0.8
4,639,777	-				+1.5
4,639,777	-				-1.6
4,639,955	+		DDA3937_RS20370	0.20	-1.8
4,639,955	+		DDA3937_RS20370	0.20	+0.7
4,639,955	+		DDA3937_RS20370	0.20	-0.5
4,639,956	-		DDA3937_RS20370	0.20	-1.5
4,639,956	-		DDA3937_RS20370	0.20	-0.5
4,639,956	-		DDA3937_RS20370	0.20	+1.9
4,639,956	-		DDA3937_RS20370	0.20	-2.4
4,639,984	+		DDA3937_RS20370	0.24	-1.0
4,639,984	+		DDA3937_RS20370	0.24	-3.3
4,639,985	-		DDA3937_RS20370	0.24	-1.5
4,639,985	-		DDA3937_RS20370	0.24	+2.5
4,640,053	+		DDA3937_RS20370	0.33	-1.9
4,640,053	+		DDA3937_RS20370	0.33	-1.8
4,640,054	-		DDA3937_RS20370	0.33	+0.3
4,640,054	-		DDA3937_RS20370	0.33	-0.0
4,640,054	-		DDA3937_RS20370	0.33	-2.9
4,640,054	-		DDA3937_RS20370	0.33	-1.5
4,640,063	-		DDA3937_RS20370	0.35	+1.2
4,640,080	+		DDA3937_RS20370	0.37	+1.1
4,640,159	+		DDA3937_RS20370	0.47	+1.5
4,640,335	-		DDA3937_RS20370	0.70	-2.0
4,640,521	-				-0.3
4,640,521	-				+0.7
4,640,521	-				+1.5
4,640,551	-				-0.6
4,640,551	-				+0.4
4,640,551	-				+0.4
4,640,561	+				-1.7
4,640,562	-				-1.0
4,640,562	-				-0.9
4,640,562	-				-0.8
4,640,586	+				+0.9
4,640,587	-				-1.5
4,640,649	-				+0.3
4,640,663	+				+0.0
4,640,700	+				+1.1
4,640,700	+				+0.5
4,640,700	+				-2.7
4,640,701	-				-1.9
4,640,744	+				+0.4
4,640,767	+				+0.2
4,640,767	+				+2.1
4,640,767	+				+0.8
4,640,767	+				+1.6
4,640,768	-				+0.5
4,640,768	-				+1.4
4,640,768	-				-0.5
4,640,771	+				+0.9
4,640,772	+				+0.1
4,640,772	+				+0.5
4,640,772	+				-0.5
4,640,773	-				-1.0
4,640,773	-				+1.3
4,640,773	-				+0.5
4,640,773	-				-1.9
4,640,783	+				-1.8
4,640,783	+				-2.4
4,640,784	-				+0.3
4,640,784	-				-2.5
4,640,784	-				-1.5
4,640,784	-				-3.2
4,640,793	+				-3.3
4,640,808	+				-1.8
4,640,838	+				-0.2
4,640,867	+				-2.1
4,640,867	+				+0.7
4,640,867	+				-0.0
4,640,868	-				-1.9
4,640,868	-				-2.6
4,640,886	+				+0.5
4,640,886	+				+0.8
4,640,886	+				-0.6
4,640,887	-				-1.8
4,640,887	-				-0.5
4,640,887	-				-1.3
4,640,938	-		DDA3937_RS20375	0.11	-0.5
4,641,004	+		DDA3937_RS20375	0.18	-2.5
4,641,004	+		DDA3937_RS20375	0.18	-1.9
4,641,004	+		DDA3937_RS20375	0.18	-3.2
4,641,004	+		DDA3937_RS20375	0.18	+0.0
4,641,004	+		DDA3937_RS20375	0.18	-2.3
4,641,004	+		DDA3937_RS20375	0.18	-1.9
4,641,005	-				-0.8
4,641,005	-		DDA3937_RS20375	0.19	+1.4
4,641,005	-		DDA3937_RS20375	0.19	+0.4
4,641,074	+		DDA3937_RS20375	0.27	+2.8
4,641,074	+		DDA3937_RS20375	0.27	-2.0
4,641,075	-		DDA3937_RS20375	0.27	+0.7
4,641,075	-		DDA3937_RS20375	0.27	+3.1
4,641,075	-		DDA3937_RS20375	0.27	+1.9
4,641,112	-		DDA3937_RS20375	0.32	+1.1
4,641,121	+		DDA3937_RS20375	0.33	+0.8
4,641,121	+		DDA3937_RS20375	0.33	-0.0
4,641,121	+		DDA3937_RS20375	0.33	+0.3
4,641,122	-		DDA3937_RS20375	0.33	-0.3
4,641,145	+		DDA3937_RS20375	0.36	+1.2
4,641,145	+		DDA3937_RS20375	0.36	-2.5
4,641,145	+		DDA3937_RS20375	0.36	-2.3
4,641,146	-		DDA3937_RS20375	0.36	-3.0
4,641,146	-		DDA3937_RS20375	0.36	-0.6
4,641,172	+		DDA3937_RS20375	0.39	+1.0
4,641,172	+		DDA3937_RS20375	0.39	-2.7
4,641,172	+		DDA3937_RS20375	0.39	-0.8
4,641,172	+		DDA3937_RS20375	0.39	-0.0
4,641,173	-		DDA3937_RS20375	0.39	-0.7
4,641,233	+		DDA3937_RS20375	0.46	+1.4
4,641,327	+		DDA3937_RS20375	0.57	-4.3
4,641,327	+		DDA3937_RS20375	0.57	-0.1
4,641,327	+		DDA3937_RS20375	0.57	+0.6
4,641,337	+		DDA3937_RS20375	0.59	-1.8
4,641,469	+		DDA3937_RS20375	0.75	+0.0
4,641,483	+		DDA3937_RS20375	0.76	+0.7
4,641,483	+				+1.0
4,641,484	-		DDA3937_RS20375	0.76	+1.4
4,641,484	-		DDA3937_RS20375	0.76	-0.2
4,641,484	-		DDA3937_RS20375	0.76	-0.6