Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19735

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,491,563	+		DDA3937_RS19730	0.45	-0.8
4,491,563	+		DDA3937_RS19730	0.45	-0.1
4,491,563	+		DDA3937_RS19730	0.45	+1.1
4,491,563	+		DDA3937_RS19730	0.45	-2.9
4,491,564	-		DDA3937_RS19730	0.45	-1.7
4,491,564	-		DDA3937_RS19730	0.45	-1.2
4,491,564	-		DDA3937_RS19730	0.45	-1.4
4,491,564	-		DDA3937_RS19730	0.45	-1.4
4,491,564	-		DDA3937_RS19730	0.45	-1.7
4,491,604	-		DDA3937_RS19730	0.47	-1.6
4,491,680	+		DDA3937_RS19730	0.53	-0.1
4,491,713	+		DDA3937_RS19730	0.55	-2.2
4,491,713	+		DDA3937_RS19730	0.55	+0.4
4,491,713	+		DDA3937_RS19730	0.55	+0.8
4,491,713	+		DDA3937_RS19730	0.55	+2.5
4,491,713	+		DDA3937_RS19730	0.55	-0.4
4,491,714	-		DDA3937_RS19730	0.55	+1.8
4,491,746	+		DDA3937_RS19730	0.57	-2.1
4,491,746	+		DDA3937_RS19730	0.57	+0.7
4,491,746	+		DDA3937_RS19730	0.57	-2.9
4,491,746	+		DDA3937_RS19730	0.57	-2.7
4,491,747	-		DDA3937_RS19730	0.57	-2.3
4,491,747	-		DDA3937_RS19730	0.57	+0.9
4,491,749	+		DDA3937_RS19730	0.58	-1.7
4,491,750	-		DDA3937_RS19730	0.58	+2.7
4,491,750	-		DDA3937_RS19730	0.58	+1.8
4,491,750	-		DDA3937_RS19730	0.58	+2.2
4,491,782	+		DDA3937_RS19730	0.60	-2.0
4,491,782	+		DDA3937_RS19730	0.60	-3.0
4,491,783	-		DDA3937_RS19730	0.60	-1.5
4,491,797	+		DDA3937_RS19730	0.61	+1.4
4,491,797	+		DDA3937_RS19730	0.61	-0.5
4,491,798	-		DDA3937_RS19730	0.61	-1.7
4,491,798	-		DDA3937_RS19730	0.61	-0.8
4,491,798	-		DDA3937_RS19730	0.61	+1.4
4,491,809	+		DDA3937_RS19730	0.62	+0.9
4,491,809	+		DDA3937_RS19730	0.62	-1.0
4,491,809	+		DDA3937_RS19730	0.62	-1.1
4,491,853	+		DDA3937_RS19730	0.65	-1.4
4,491,854	-				+0.6
4,491,863	+		DDA3937_RS19730	0.66	-1.2
4,491,864	-		DDA3937_RS19730	0.66	-3.4
4,491,873	+		DDA3937_RS19730	0.66	+0.7
4,491,873	+		DDA3937_RS19730	0.66	+1.4
4,491,882	+		DDA3937_RS19730	0.67	+0.8
4,491,882	+		DDA3937_RS19730	0.67	-2.2
4,491,883	-		DDA3937_RS19730	0.67	-1.6
4,491,883	-		DDA3937_RS19730	0.67	-2.9
4,491,883	-		DDA3937_RS19730	0.67	-0.4
4,491,920	+		DDA3937_RS19730	0.70	-1.4
4,492,094	+		DDA3937_RS19730	0.82	-1.7
4,492,094	+		DDA3937_RS19730	0.82	+0.2
4,492,094	+		DDA3937_RS19730	0.82	-3.2
4,492,094	+		DDA3937_RS19730	0.82	+3.2
4,492,094	+		DDA3937_RS19730	0.82	+0.7
4,492,118	+		DDA3937_RS19730	0.83	-0.7
4,492,118	+		DDA3937_RS19730	0.83	+0.9
4,492,136	+		DDA3937_RS19730	0.85	+0.6
4,492,136	+		DDA3937_RS19730	0.85	+1.7
4,492,136	+		DDA3937_RS19730	0.85	+1.5
4,492,136	+		DDA3937_RS19730	0.85	+2.1
4,492,136	+		DDA3937_RS19730	0.85	-1.7
4,492,137	-		DDA3937_RS19730	0.85	+1.4
4,492,137	-		DDA3937_RS19730	0.85	-0.9
4,492,137	-		DDA3937_RS19730	0.85	-2.1
4,492,137	-		DDA3937_RS19730	0.85	+0.7
4,492,137	-		DDA3937_RS19730	0.85	-0.0
4,492,174	-		DDA3937_RS19730	0.87	+1.2
4,492,345	+				+1.1
4,492,345	+				+1.7
4,492,345	+				+1.1
4,492,345	+				-1.0
4,492,345	+				-2.9
4,492,345	+				-1.6
4,492,345	+				+0.4
4,492,345	+				-2.0
4,492,345	+				-2.2
4,492,345	+				-2.5
4,492,345	+				+1.8
4,492,345	+				+1.1
4,492,345	+				-2.0
4,492,345	+				+0.0
4,492,345	+				-0.1
4,492,345	+				-1.0
4,492,345	+				+2.6
4,492,345	+				-1.0
4,492,346	-				-0.3
4,492,346	-				-2.8
4,492,346	-				-1.7
4,492,346	-				-1.5
4,492,346	-				-0.0
4,492,346	-				+0.7
4,492,346	-				-2.4
4,492,346	-				-1.4
4,492,346	-				-2.3
4,492,346	-				-3.0
4,492,346	-				-3.3
4,492,346	-				-0.2
4,492,346	-				-2.1
4,492,346	-				-3.4
4,492,346	-				-2.0
4,492,349	-				+2.5
4,492,598	+		DDA3937_RS19735	0.13	+2.7
4,492,599	-		DDA3937_RS19735	0.13	-1.2
4,492,599	-		DDA3937_RS19735	0.13	+1.1
4,492,810	+		DDA3937_RS19735	0.29	+0.6
4,492,810	+		DDA3937_RS19735	0.29	+2.1
4,492,810	+		DDA3937_RS19735	0.29	-1.7
4,492,810	+		DDA3937_RS19735	0.29	-2.7
4,492,810	+		DDA3937_RS19735	0.29	+0.2
4,492,811	-		DDA3937_RS19735	0.29	+3.2
4,492,811	-		DDA3937_RS19735	0.29	-2.1
4,492,811	-		DDA3937_RS19735	0.29	+1.2
4,492,811	-		DDA3937_RS19735	0.29	-0.3
4,492,818	+		DDA3937_RS19735	0.30	-3.6
4,492,818	+		DDA3937_RS19735	0.30	+1.7
4,492,818	+		DDA3937_RS19735	0.30	-2.6
4,492,818	+		DDA3937_RS19735	0.30	+3.1
4,492,818	+		DDA3937_RS19735	0.30	-0.7
4,492,818	+		DDA3937_RS19735	0.30	-2.0
4,492,819	-		DDA3937_RS19735	0.30	+1.7
4,492,819	-		DDA3937_RS19735	0.30	-0.0
4,492,819	-		DDA3937_RS19735	0.30	+0.1
4,492,819	-		DDA3937_RS19735	0.30	+1.8
4,492,819	-		DDA3937_RS19735	0.30	-0.5
4,492,819	-		DDA3937_RS19735	0.30	+0.8
4,492,819	-		DDA3937_RS19735	0.30	-2.7
4,492,819	-		DDA3937_RS19735	0.30	+2.3
4,492,819	-		DDA3937_RS19735	0.30	-0.2
4,492,819	-		DDA3937_RS19735	0.30	-1.5
4,492,870	-		DDA3937_RS19735	0.34	+1.1
4,492,899	+		DDA3937_RS19735	0.36	-2.6
4,493,052	+		DDA3937_RS19735	0.48	-2.2
4,493,052	+		DDA3937_RS19735	0.48	-0.6
4,493,052	+		DDA3937_RS19735	0.48	-2.2
4,493,053	-		DDA3937_RS19735	0.48	+0.0
4,493,070	+		DDA3937_RS19735	0.49	+2.7
4,493,070	+		DDA3937_RS19735	0.49	-2.3
4,493,070	+		DDA3937_RS19735	0.49	-3.3
4,493,070	+		DDA3937_RS19735	0.49	-3.0
4,493,070	+				-0.4
4,493,070	+		DDA3937_RS19735	0.49	-0.2
4,493,071	-		DDA3937_RS19735	0.50	+0.4
4,493,071	-		DDA3937_RS19735	0.50	+2.4
4,493,071	-		DDA3937_RS19735	0.50	-2.7
4,493,071	-		DDA3937_RS19735	0.50	+0.5
4,493,071	-		DDA3937_RS19735	0.50	+0.1
4,493,071	-				+2.2
4,493,071	-		DDA3937_RS19735	0.50	-0.1
4,493,071	-		DDA3937_RS19735	0.50	-2.5
4,493,071	-		DDA3937_RS19735	0.50	+0.9
4,493,149	+		DDA3937_RS19735	0.56	-0.1
4,493,150	-		DDA3937_RS19735	0.56	-0.2
4,493,272	-		DDA3937_RS19735	0.65	-0.4
4,493,272	-		DDA3937_RS19735	0.65	+3.0
4,493,283	+		DDA3937_RS19735	0.66	+1.7
4,493,283	+		DDA3937_RS19735	0.66	-1.6
4,493,283	+		DDA3937_RS19735	0.66	-0.7
4,493,283	+		DDA3937_RS19735	0.66	+1.8
4,493,284	-		DDA3937_RS19735	0.66	-0.1
4,493,284	-		DDA3937_RS19735	0.66	+2.3
4,493,284	-				-1.0
4,493,284	-		DDA3937_RS19735	0.66	-0.0
4,493,284	-		DDA3937_RS19735	0.66	+1.6
4,493,284	-		DDA3937_RS19735	0.66	+1.0
4,493,313	+		DDA3937_RS19735	0.68	-2.1
4,493,313	+		DDA3937_RS19735	0.68	+1.7
4,493,314	-		DDA3937_RS19735	0.68	-0.8
4,493,335	+		DDA3937_RS19735	0.70	+2.9
4,493,338	+		DDA3937_RS19735	0.70	-0.5
4,493,496	+		DDA3937_RS19735	0.83	-1.4
4,493,496	+		DDA3937_RS19735	0.83	+0.9
4,493,572	+		DDA3937_RS19735	0.89	-0.2
4,493,572	+		DDA3937_RS19735	0.89	-0.6
4,493,711	-				+0.8
4,493,731	+				-1.4
4,493,731	+				-2.8
4,493,731	+				+0.9
4,493,731	+				+2.0
4,493,731	+				+3.8
4,493,731	+				-0.1
4,493,734	+				+2.3
4,493,742	+				+0.9
4,493,742	+				-1.7
4,493,743	-				-2.3
4,493,749	-				+0.4
4,493,793	+				-1.2
4,493,794	-				+1.7
4,493,886	+				-2.7
4,493,886	+				+1.4
4,493,886	+				-0.7
4,493,887	-				+0.3
4,494,059	+		DDA3937_RS19740	0.17	+0.5
4,494,124	+		DDA3937_RS19740	0.20	-2.1
4,494,124	+		DDA3937_RS19740	0.20	-2.1
4,494,124	+		DDA3937_RS19740	0.20	+0.6
4,494,125	-		DDA3937_RS19740	0.20	+2.2
4,494,201	+		DDA3937_RS19740	0.24	-1.4
4,494,201	+		DDA3937_RS19740	0.24	+0.2
4,494,202	-		DDA3937_RS19740	0.24	-3.0
4,494,202	-		DDA3937_RS19740	0.24	+1.2
4,494,202	-		DDA3937_RS19740	0.24	-1.2
4,494,290	+		DDA3937_RS19740	0.28	+0.4
4,494,291	-		DDA3937_RS19740	0.28	-1.5
4,494,291	-		DDA3937_RS19740	0.28	-2.0
4,494,291	-		DDA3937_RS19740	0.28	-1.6
4,494,374	+		DDA3937_RS19740	0.33	-0.0
4,494,375	-		DDA3937_RS19740	0.33	-0.4
4,494,375	-		DDA3937_RS19740	0.33	+2.3