Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19630

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,464,176	-				+2.0
4,464,179	-				-0.4
4,464,179	-				-1.5
4,464,236	+				-2.3
4,464,236	+				-0.4
4,464,237	-				+0.3
4,464,237	-				-1.0
4,464,238	+				-2.1
4,464,238	+				+0.6
4,464,238	+				-3.1
4,464,238	+				-2.0
4,464,238	+				-0.1
4,464,238	+				-2.4
4,464,239	-				-2.3
4,464,239	-				-1.4
4,464,240	+				-1.0
4,464,240	+				-1.1
4,464,240	+				-3.1
4,464,240	+				-2.7
4,464,240	+				-3.0
4,464,240	+				-0.4
4,464,240	+				-2.7
4,464,241	-				-1.4
4,464,241	-				+1.6
4,464,241	-				+0.1
4,464,241	-				+1.5
4,464,241	-				-1.6
4,464,241	-				-0.6
4,464,282	+				-0.9
4,464,282	+				+1.3
4,464,336	+				-0.9
4,464,343	+				-3.0
4,464,343	+				-0.3
4,464,348	+				+2.8
4,464,348	+				+1.4
4,464,348	+				-1.4
4,464,348	+				+2.8
4,464,348	+				+0.2
4,464,348	+				+3.0
4,464,348	+				+2.1
4,464,349	-				-3.0
4,464,349	-				+0.6
4,464,366	+				-3.9
4,464,366	+				+0.1
4,464,368	+				-1.2
4,464,368	+				-1.8
4,464,377	+				+0.4
4,464,377	+				+1.6
4,464,378	-				+1.1
4,464,378	-				-1.9
4,464,378	-				-0.3
4,464,404	-				+0.6
4,464,404	-				-1.7
4,464,461	+				-0.8
4,464,461	+		DDA3937_RS19625	0.11	-1.7
4,464,461	+		DDA3937_RS19625	0.11	+1.4
4,464,461	+		DDA3937_RS19625	0.11	+1.0
4,464,462	-		DDA3937_RS19625	0.12	-0.0
4,464,462	-		DDA3937_RS19625	0.12	-2.0
4,464,462	-		DDA3937_RS19625	0.12	+1.1
4,464,462	-		DDA3937_RS19625	0.12	-1.9
4,464,545	+		DDA3937_RS19625	0.28	-1.8
4,464,546	-		DDA3937_RS19625	0.28	+0.7
4,464,551	+		DDA3937_RS19625	0.29	-3.0
4,464,551	+		DDA3937_RS19625	0.29	-1.4
4,464,551	+		DDA3937_RS19625	0.29	-1.8
4,464,552	-		DDA3937_RS19625	0.30	-2.0
4,464,632	+		DDA3937_RS19625	0.46	-1.6
4,464,632	+		DDA3937_RS19625	0.46	-3.1
4,464,633	-		DDA3937_RS19625	0.46	-1.8
4,464,657	+		DDA3937_RS19625	0.50	-1.9
4,464,738	-		DDA3937_RS19625	0.67	-1.3
4,464,753	-		DDA3937_RS19625	0.70	+0.5
4,464,823	+		DDA3937_RS19625	0.84	-2.3
4,464,823	+		DDA3937_RS19625	0.84	-0.3
4,464,848	+		DDA3937_RS19625	0.89	-0.8
4,464,848	+		DDA3937_RS19625	0.89	+1.9
4,464,849	-		DDA3937_RS19625	0.89	-2.3
4,464,849	-		DDA3937_RS19625	0.89	+0.8
4,464,856	+				+0.0
4,464,921	+				+1.5
4,464,977	+				-2.8
4,464,977	+				-3.3
4,464,977	+				-2.4
4,464,978	-				-1.1
4,464,978	-				-0.4
4,464,978	-				-1.6
4,464,978	-				-0.0
4,464,978	-				-4.1
4,465,009	-				-1.0
4,465,018	-				+1.1
4,465,022	+				-1.6
4,465,023	-				-2.7
4,465,023	-				-1.3
4,465,025	-				-0.2
4,465,025	-				-1.0
4,465,025	-				-1.9
4,465,026	+				-1.3
4,465,045	-				+0.2
4,465,045	-				+0.5
4,465,045	-				-2.6
4,465,045	-				-2.7
4,465,054	+				-3.4
4,465,055	-				+0.9
4,465,118	+				-2.5
4,465,118	+				-3.7
4,465,119	-				-2.8
4,465,138	+				-0.5
4,465,138	+				-1.5
4,465,138	+				-2.4
4,465,138	+				+3.3
4,465,138	+				-3.0
4,465,139	-				-1.7
4,465,139	-				+1.7
4,465,139	-				-2.5
4,465,139	-				-2.7
4,465,139	-				+1.3
4,465,141	+				+1.7
4,465,141	+				+2.3
4,465,141	+				+1.1
4,465,142	-				-2.0
4,465,142	-				-1.3
4,465,142	-				+0.4
4,465,196	+				+1.1
4,465,196	+				+0.1
4,465,196	+				-1.1
4,465,197	-				-0.2
4,465,197	-				-3.7
4,465,197	-				+1.5
4,465,295	+		DDA3937_RS19630	0.10	-2.1
4,465,295	+		DDA3937_RS19630	0.10	-2.4
4,465,296	-		DDA3937_RS19630	0.10	-3.1
4,465,296	-		DDA3937_RS19630	0.10	-1.3
4,465,417	+		DDA3937_RS19630	0.17	-2.3
4,465,417	+		DDA3937_RS19630	0.17	-2.0
4,465,417	+		DDA3937_RS19630	0.17	+1.0
4,465,418	-		DDA3937_RS19630	0.17	+1.5
4,465,418	-		DDA3937_RS19630	0.17	+1.0
4,465,450	+		DDA3937_RS19630	0.19	-0.2
4,465,451	-		DDA3937_RS19630	0.19	-1.6
4,465,458	+		DDA3937_RS19630	0.20	+1.0
4,465,458	+		DDA3937_RS19630	0.20	+0.1
4,465,496	+		DDA3937_RS19630	0.22	+0.4
4,465,497	-		DDA3937_RS19630	0.22	-2.2
4,465,497	-		DDA3937_RS19630	0.22	-1.4
4,465,502	+		DDA3937_RS19630	0.22	-3.0
4,465,634	+		DDA3937_RS19630	0.30	-1.7
4,465,701	-		DDA3937_RS19630	0.34	-0.3
4,465,716	+		DDA3937_RS19630	0.35	-1.8
4,465,716	+		DDA3937_RS19630	0.35	+0.7
4,465,734	+		DDA3937_RS19630	0.36	-2.8
4,465,735	-		DDA3937_RS19630	0.36	+1.3
4,465,735	-		DDA3937_RS19630	0.36	-1.0
4,465,898	-		DDA3937_RS19630	0.45	-0.7
4,466,025	+		DDA3937_RS19630	0.53	-2.0
4,466,052	+		DDA3937_RS19630	0.54	-2.1
4,466,053	-		DDA3937_RS19630	0.54	-2.8
4,466,157	+		DDA3937_RS19630	0.60	+1.9
4,466,157	+		DDA3937_RS19630	0.60	-1.6
4,466,158	-		DDA3937_RS19630	0.60	-0.8
4,466,173	+				-0.4
4,466,173	+		DDA3937_RS19630	0.61	-1.4
4,466,262	+		DDA3937_RS19630	0.66	+3.3
4,466,262	+		DDA3937_RS19630	0.66	-1.9
4,466,263	-		DDA3937_RS19630	0.67	-1.1
4,466,270	+		DDA3937_RS19630	0.67	-3.3
4,466,271	-		DDA3937_RS19630	0.67	-1.3
4,466,271	-		DDA3937_RS19630	0.67	-0.7
4,466,271	-		DDA3937_RS19630	0.67	+1.2
4,466,352	+		DDA3937_RS19630	0.72	-2.1
4,466,353	-		DDA3937_RS19630	0.72	+0.0
4,466,353	-		DDA3937_RS19630	0.72	-2.1
4,466,401	-		DDA3937_RS19630	0.75	+0.2
4,466,401	-		DDA3937_RS19630	0.75	+0.4
4,466,427	+		DDA3937_RS19630	0.76	-3.1
4,466,595	+		DDA3937_RS19630	0.86	+0.4
4,466,596	-		DDA3937_RS19630	0.86	-2.3
4,466,624	+		DDA3937_RS19630	0.88	-1.4
4,466,625	-		DDA3937_RS19630	0.88	-0.4
4,466,637	-		DDA3937_RS19630	0.88	+0.0
4,466,661	+		DDA3937_RS19630	0.90	+2.6
4,466,662	-		DDA3937_RS19630	0.90	-0.8
4,466,662	-		DDA3937_RS19630	0.90	-2.4
4,466,662	-		DDA3937_RS19630	0.90	+0.5
4,466,662	-		DDA3937_RS19630	0.90	-0.2
4,466,663	+		DDA3937_RS19630	0.90	-1.6
4,466,663	+		DDA3937_RS19630	0.90	+0.3
4,466,663	+		DDA3937_RS19630	0.90	-0.3
4,466,664	-		DDA3937_RS19630	0.90	-1.4
4,466,664	-		DDA3937_RS19630	0.90	+2.1
4,466,671	-				-2.5
4,466,755	+				+0.5
4,466,767	+				+0.1
4,466,767	+				+0.2
4,466,768	-				-2.9
4,466,768	-				-1.2
4,466,768	-				+0.8
4,466,800	-				+1.8
4,466,800	-				-1.6
4,466,836	-				-0.8
4,466,843	+				+2.0
4,466,843	+				+1.0
4,466,843	+				+2.6
4,466,845	+				+2.2
4,466,845	+				+1.1
4,466,845	+				-2.1
4,466,846	-				+0.9
4,466,846	-				+1.1
4,466,846	-				+1.0
4,466,846	-				+1.9
4,466,846	-				+0.9
4,466,925	+				+0.8
4,466,927	+				+0.2
4,466,927	+				+2.9
4,466,927	+				+1.1
4,466,927	+				+2.4
4,466,927	+				-0.4
4,466,927	+				+1.4
4,466,928	-				-2.4
4,466,928	-				-2.9
4,466,928	-				+0.8
4,466,946	+				-1.4
4,466,946	+				+1.0
4,466,946	+				+0.9
4,466,947	-				-1.1
4,466,947	-				+1.3
4,466,964	+				-0.1
4,466,965	-				-0.9
4,466,965	-				-0.7
4,466,965	-				-2.1
4,466,981	+				-2.7
4,466,981	+				-1.9
4,466,999	-				+1.5
4,466,999	-				-1.8
4,466,999	-				-0.0
4,467,012	+				+0.5
4,467,012	+				+0.7
4,467,046	+				-2.8
4,467,047	-				-2.7
4,467,047	-				-2.5
4,467,047	-				-0.2
4,467,180	-				+1.0
4,467,305	+		DDA3937_RS19635	0.13	-1.2
4,467,305	+		DDA3937_RS19635	0.13	-0.4
4,467,306	-		DDA3937_RS19635	0.13	-1.2
4,467,314	+		DDA3937_RS19635	0.13	+1.6
4,467,315	-		DDA3937_RS19635	0.13	-3.6
4,467,315	-		DDA3937_RS19635	0.13	+0.9
4,467,315	-		DDA3937_RS19635	0.13	+1.6
4,467,428	+		DDA3937_RS19635	0.18	-3.2
4,467,428	+		DDA3937_RS19635	0.18	-0.8
4,467,429	-		DDA3937_RS19635	0.18	+1.0
4,467,429	-		DDA3937_RS19635	0.18	+0.8
4,467,429	-		DDA3937_RS19635	0.18	-1.0
4,467,429	-		DDA3937_RS19635	0.18	-0.4
4,467,429	-		DDA3937_RS19635	0.18	-0.6
4,467,487	+		DDA3937_RS19635	0.21	-1.5
4,467,488	-		DDA3937_RS19635	0.21	-2.0
4,467,542	+		DDA3937_RS19635	0.23	-2.0
4,467,543	-		DDA3937_RS19635	0.23	-0.0
4,467,543	-		DDA3937_RS19635	0.23	+1.6
4,467,543	-		DDA3937_RS19635	0.23	+1.2
4,467,786	+		DDA3937_RS19635	0.34	+1.2
4,467,786	+		DDA3937_RS19635	0.34	-0.4
4,467,787	-		DDA3937_RS19635	0.34	-3.1
4,467,787	-		DDA3937_RS19635	0.34	-1.4
4,467,787	-		DDA3937_RS19635	0.34	-2.4
4,467,787	-		DDA3937_RS19635	0.34	+0.2