Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19405

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,410,895	+		DDA3937_RS19395	0.23	+0.0
4,410,895	+		DDA3937_RS19395	0.23	-2.5
4,410,895	+		DDA3937_RS19395	0.23	-1.6
4,410,895	+		DDA3937_RS19395	0.23	+0.7
4,410,937	-		DDA3937_RS19395	0.30	-0.9
4,411,139	+		DDA3937_RS19395	0.64	-1.5
4,411,139	+		DDA3937_RS19395	0.64	+0.0
4,411,139	+		DDA3937_RS19395	0.64	+0.6
4,411,140	-		DDA3937_RS19395	0.64	-0.1
4,411,149	-		DDA3937_RS19395	0.66	+1.1
4,411,250	+		DDA3937_RS19395	0.83	-1.9
4,411,250	+		DDA3937_RS19395	0.83	-3.3
4,411,251	-		DDA3937_RS19395	0.83	-0.4
4,411,251	-		DDA3937_RS19395	0.83	-2.1
4,411,251	-		DDA3937_RS19395	0.83	+0.6
4,411,288	+		DDA3937_RS19395	0.89	-2.2
4,411,288	+		DDA3937_RS19395	0.89	-4.0
4,411,288	+		DDA3937_RS19395	0.89	-0.4
4,411,289	-		DDA3937_RS19395	0.90	+2.6
4,411,302	+				-1.8
4,411,303	-				-0.0
4,411,303	-				-0.8
4,411,306	+				-1.6
4,411,306	+				-2.3
4,411,307	-				+1.6
4,411,307	-				+0.0
4,411,313	+				+2.4
4,411,342	+				-2.6
4,411,342	+				-2.0
4,411,343	-				-2.1
4,411,353	+				+0.1
4,411,354	-				-0.8
4,411,354	-				-2.8
4,411,361	-				+3.0
4,411,361	-				-0.6
4,411,411	+				+0.3
4,411,411	+				+0.6
4,411,411	+				-0.0
4,411,411	+				+0.4
4,411,411	+				-1.2
4,411,411	+				-2.6
4,411,412	-				+0.3
4,411,412	-				-1.0
4,411,412	-				+2.2
4,411,412	-				-2.2
4,411,412	-				-1.4
4,411,412	-				+1.5
4,411,412	-				+0.4
4,411,412	-				+3.2
4,411,412	-				-1.4
4,411,441	+				-2.5
4,411,441	+				-0.0
4,411,441	+				-1.2
4,411,442	-				-2.8
4,411,442	-				+0.9
4,411,447	-				-2.1
4,411,447	-				-0.4
4,411,496	-				+0.4
4,411,511	+				+3.3
4,411,511	+				-0.7
4,411,512	-				-3.6
4,411,512	-				-1.3
4,411,512	-				+0.4
4,411,596	+		DDA3937_RS19400	0.52	-1.4
4,411,596	+		DDA3937_RS19400	0.52	+1.0
4,411,596	+		DDA3937_RS19400	0.52	-3.2
4,411,596	+		DDA3937_RS19400	0.52	-1.3
4,411,596	+		DDA3937_RS19400	0.52	+1.8
4,411,596	+		DDA3937_RS19400	0.52	+1.3
4,411,596	+		DDA3937_RS19400	0.52	-0.1
4,411,597	-		DDA3937_RS19400	0.53	-0.4
4,411,597	-		DDA3937_RS19400	0.53	-0.8
4,411,634	+				-1.0
4,411,758	+				-2.0
4,411,758	+				-3.2
4,411,816	+				+1.0
4,411,817	-				+0.4
4,411,817	-				+0.1
4,411,900	+				+0.2
4,411,900	+				+0.8
4,411,900	+				+0.1
4,411,900	+				+0.4
4,411,901	-				+2.1
4,411,901	-				+0.4
4,411,901	-				+3.2
4,411,901	-				+2.2
4,411,901	-				-1.7
4,411,901	-				+2.2
4,411,901	-				+1.6
4,412,152	+		DDA3937_RS19405	0.22	-0.2
4,412,152	+		DDA3937_RS19405	0.22	-0.1
4,412,152	+		DDA3937_RS19405	0.22	+2.1
4,412,152	+		DDA3937_RS19405	0.22	+0.9
4,412,153	-		DDA3937_RS19405	0.22	+0.4
4,412,221	-		DDA3937_RS19405	0.26	+0.4
4,412,223	+		DDA3937_RS19405	0.26	-0.7
4,412,224	-		DDA3937_RS19405	0.26	+2.9
4,412,224	-				+3.4
4,412,232	+		DDA3937_RS19405	0.26	-2.3
4,412,233	-		DDA3937_RS19405	0.26	-0.5
4,412,239	-		DDA3937_RS19405	0.27	-0.5
4,412,239	-		DDA3937_RS19405	0.27	+1.0
4,412,242	+		DDA3937_RS19405	0.27	+1.6
4,412,242	+		DDA3937_RS19405	0.27	-0.7
4,412,242	+		DDA3937_RS19405	0.27	-0.9
4,412,242	+		DDA3937_RS19405	0.27	-1.2
4,412,242	+		DDA3937_RS19405	0.27	-1.0
4,412,243	-		DDA3937_RS19405	0.27	-1.7
4,412,243	-		DDA3937_RS19405	0.27	+0.3
4,412,243	-		DDA3937_RS19405	0.27	-1.0
4,412,267	-		DDA3937_RS19405	0.28	+1.9
4,412,354	+		DDA3937_RS19405	0.33	+0.5
4,412,354	+		DDA3937_RS19405	0.33	-1.5
4,412,355	-		DDA3937_RS19405	0.33	-2.5
4,412,355	-		DDA3937_RS19405	0.33	+0.6
4,412,355	-		DDA3937_RS19405	0.33	+1.8
4,412,355	-		DDA3937_RS19405	0.33	+1.2
4,412,355	-		DDA3937_RS19405	0.33	-1.9
4,412,355	-		DDA3937_RS19405	0.33	+1.0
4,412,379	+		DDA3937_RS19405	0.34	+2.7
4,412,379	+		DDA3937_RS19405	0.34	+2.8
4,412,380	-		DDA3937_RS19405	0.34	+1.0
4,412,429	-		DDA3937_RS19405	0.37	+2.2
4,412,437	+		DDA3937_RS19405	0.38	+1.7
4,412,438	-		DDA3937_RS19405	0.38	+0.6
4,412,467	+		DDA3937_RS19405	0.39	+0.7
4,412,467	+		DDA3937_RS19405	0.39	+0.9
4,412,467	+		DDA3937_RS19405	0.39	-1.4
4,412,467	+		DDA3937_RS19405	0.39	-2.6
4,412,467	+		DDA3937_RS19405	0.39	+3.2
4,412,467	+		DDA3937_RS19405	0.39	+0.2
4,412,467	+		DDA3937_RS19405	0.39	+0.4
4,412,467	+		DDA3937_RS19405	0.39	+0.6
4,412,467	+		DDA3937_RS19405	0.39	+2.0
4,412,467	+		DDA3937_RS19405	0.39	-0.4
4,412,467	+		DDA3937_RS19405	0.39	+0.4
4,412,467	+		DDA3937_RS19405	0.39	+2.1
4,412,467	+		DDA3937_RS19405	0.39	-1.4
4,412,467	+		DDA3937_RS19405	0.39	-0.2
4,412,467	+		DDA3937_RS19405	0.39	+3.1
4,412,467	+		DDA3937_RS19405	0.39	+1.6
4,412,467	+		DDA3937_RS19405	0.39	-0.1
4,412,467	+		DDA3937_RS19405	0.39	+0.4
4,412,467	+		DDA3937_RS19405	0.39	+0.5
4,412,467	+		DDA3937_RS19405	0.39	+0.5
4,412,468	-		DDA3937_RS19405	0.39	-2.0
4,412,468	-		DDA3937_RS19405	0.39	-0.0
4,412,468	-				-0.0
4,412,468	-		DDA3937_RS19405	0.39	-2.8
4,412,468	-		DDA3937_RS19405	0.39	-1.3
4,412,468	-		DDA3937_RS19405	0.39	-0.3
4,412,468	-		DDA3937_RS19405	0.39	-3.6
4,412,468	-		DDA3937_RS19405	0.39	-0.7
4,412,468	-		DDA3937_RS19405	0.39	-0.1
4,412,468	-		DDA3937_RS19405	0.39	+0.4
4,412,468	-		DDA3937_RS19405	0.39	+1.1
4,412,468	-		DDA3937_RS19405	0.39	+1.9
4,412,468	-		DDA3937_RS19405	0.39	-1.6
4,412,468	-		DDA3937_RS19405	0.39	+1.3
4,412,468	-		DDA3937_RS19405	0.39	-0.0
4,412,468	-		DDA3937_RS19405	0.39	-0.2
4,412,468	-		DDA3937_RS19405	0.39	+0.9
4,412,468	-		DDA3937_RS19405	0.39	-0.3
4,412,468	-		DDA3937_RS19405	0.39	+1.1
4,412,468	-		DDA3937_RS19405	0.39	+1.9
4,412,471	+		DDA3937_RS19405	0.40	+0.9
4,412,471	+		DDA3937_RS19405	0.40	-1.9
4,412,471	+		DDA3937_RS19405	0.40	+1.3
4,412,471	+		DDA3937_RS19405	0.40	+1.6
4,412,472	-		DDA3937_RS19405	0.40	+0.2
4,412,472	-		DDA3937_RS19405	0.40	+0.3
4,412,472	-		DDA3937_RS19405	0.40	+2.3
4,412,472	-		DDA3937_RS19405	0.40	-1.5
4,412,472	-		DDA3937_RS19405	0.40	+0.4
4,412,472	-		DDA3937_RS19405	0.40	+0.6
4,412,516	+		DDA3937_RS19405	0.42	+0.4
4,412,517	-		DDA3937_RS19405	0.42	-0.9
4,412,517	-		DDA3937_RS19405	0.42	+1.2
4,412,616	+		DDA3937_RS19405	0.48	+0.4
4,412,634	+		DDA3937_RS19405	0.49	+0.5
4,412,635	-		DDA3937_RS19405	0.49	-1.7
4,412,693	-		DDA3937_RS19405	0.52	+1.4
4,412,700	+				+0.6
4,412,700	+		DDA3937_RS19405	0.52	-2.1
4,412,701	-		DDA3937_RS19405	0.52	+2.0
4,412,701	-		DDA3937_RS19405	0.52	+1.6
4,412,830	+		DDA3937_RS19405	0.59	+0.4
4,412,831	-		DDA3937_RS19405	0.59	+1.1
4,412,831	-		DDA3937_RS19405	0.59	+3.0
4,412,968	-		DDA3937_RS19405	0.67	-1.2
4,413,044	+		DDA3937_RS19405	0.71	-0.1
4,413,044	+		DDA3937_RS19405	0.71	+1.2
4,413,243	+		DDA3937_RS19405	0.82	+2.1
4,413,243	+		DDA3937_RS19405	0.82	+0.6
4,413,243	+		DDA3937_RS19405	0.82	+1.7
4,413,243	+		DDA3937_RS19405	0.82	+2.5
4,413,243	+		DDA3937_RS19405	0.82	+0.9
4,413,244	-		DDA3937_RS19405	0.82	+0.9
4,413,244	-		DDA3937_RS19405	0.82	+1.4
4,413,244	-		DDA3937_RS19405	0.82	+0.3
4,413,244	-		DDA3937_RS19405	0.82	-1.0
4,413,244	-		DDA3937_RS19405	0.82	+0.8
4,413,355	+		DDA3937_RS19405	0.88	+1.5
4,413,356	-		DDA3937_RS19405	0.89	-0.0
4,413,567	+				+3.6
4,413,567	+				+1.5
4,413,567	+				+0.6
4,413,567	+				-0.0
4,413,567	+				-3.7
4,413,567	+				+1.5
4,413,568	-				-0.8
4,413,568	-				+1.2
4,413,609	+				-1.0
4,413,632	+		DDA3937_RS19410	0.12	-0.0
4,413,632	+		DDA3937_RS19410	0.12	+1.4
4,413,632	+		DDA3937_RS19410	0.12	+0.5
4,413,632	+		DDA3937_RS19410	0.12	-2.6
4,413,632	+		DDA3937_RS19410	0.12	+0.3
4,413,633	-		DDA3937_RS19410	0.12	+0.1
4,413,633	-		DDA3937_RS19410	0.12	+0.2
4,413,633	-		DDA3937_RS19410	0.12	-1.5
4,413,661	-		DDA3937_RS19410	0.17	-1.2
4,413,725	+		DDA3937_RS19410	0.29	+1.4
4,413,725	+		DDA3937_RS19410	0.29	-1.6
4,413,725	+		DDA3937_RS19410	0.29	+1.6
4,413,726	-		DDA3937_RS19410	0.29	-2.2
4,413,726	-		DDA3937_RS19410	0.29	-2.6
4,413,726	-		DDA3937_RS19410	0.29	-1.0
4,413,726	-		DDA3937_RS19410	0.29	+1.2
4,413,726	-		DDA3937_RS19410	0.29	+0.9
4,413,726	-		DDA3937_RS19410	0.29	+0.8
4,413,742	-		DDA3937_RS19410	0.32	+2.3
4,413,807	+		DDA3937_RS19410	0.44	-1.3
4,413,900	+		DDA3937_RS19410	0.61	-0.5
4,413,900	+		DDA3937_RS19410	0.61	-0.0
4,413,900	+		DDA3937_RS19410	0.61	+1.4
4,413,900	+		DDA3937_RS19410	0.61	+0.5
4,413,900	+		DDA3937_RS19410	0.61	+1.3
4,413,900	+		DDA3937_RS19410	0.61	-0.7
4,413,900	+		DDA3937_RS19410	0.61	+1.6
4,413,900	+		DDA3937_RS19410	0.61	+0.4
4,413,900	+		DDA3937_RS19410	0.61	-0.2
4,413,900	+		DDA3937_RS19410	0.61	-0.9
4,413,901	-		DDA3937_RS19410	0.61	-3.3
4,413,901	-		DDA3937_RS19410	0.61	+1.2
4,413,901	-		DDA3937_RS19410	0.61	+1.5
4,413,901	-		DDA3937_RS19410	0.61	-1.0
4,413,901	-		DDA3937_RS19410	0.61	+2.7
4,413,901	-		DDA3937_RS19410	0.61	+0.6
4,413,904	+		DDA3937_RS19410	0.61	+0.3
4,413,904	+		DDA3937_RS19410	0.61	-3.1
4,413,905	-		DDA3937_RS19410	0.61	-1.0
4,413,905	-		DDA3937_RS19410	0.61	-1.6
4,413,906	+		DDA3937_RS19410	0.62	-3.5
4,413,907	-		DDA3937_RS19410	0.62	+1.3
4,413,907	-		DDA3937_RS19410	0.62	+0.3
4,413,968	-		DDA3937_RS19410	0.73	+0.3
4,413,987	+		DDA3937_RS19410	0.76	+0.1
4,413,988	-		DDA3937_RS19410	0.76	-2.3
4,413,997	-		DDA3937_RS19410	0.78	+1.1
4,414,040	+		DDA3937_RS19410	0.86	+1.1
4,414,040	+		DDA3937_RS19410	0.86	-2.2
4,414,040	+		DDA3937_RS19410	0.86	-0.7
4,414,041	-		DDA3937_RS19410	0.86	-0.7
4,414,041	-		DDA3937_RS19410	0.86	-0.0
4,414,043	+		DDA3937_RS19410	0.86	+1.7
4,414,043	+		DDA3937_RS19410	0.86	-2.0
4,414,043	+		DDA3937_RS19410	0.86	-2.7
4,414,043	+		DDA3937_RS19410	0.86	+1.0
4,414,044	-		DDA3937_RS19410	0.87	+1.1
4,414,044	-		DDA3937_RS19410	0.87	+1.6
4,414,044	-		DDA3937_RS19410	0.87	+1.8
4,414,044	-		DDA3937_RS19410	0.87	-2.7
4,414,052	-		DDA3937_RS19410	0.88	+1.2
4,414,052	-		DDA3937_RS19410	0.88	+0.2
4,414,144	+				+2.5
4,414,144	+				-1.2
4,414,144	+				+0.8
4,414,145	-				-1.2
4,414,145	-				-1.4
4,414,145	-				+2.4
4,414,145	-				+0.0
4,414,145	-				-2.0
4,414,148	+				+1.6
4,414,148	+				-0.4
4,414,176	+				+2.1
4,414,176	+				+0.6
4,414,176	+				+1.2
4,414,176	+				+3.0
4,414,177	-				-0.1
4,414,177	-				-1.6
4,414,177	-				-0.3
4,414,216	+				-2.4
4,414,216	+				+0.8
4,414,216	+				-1.9
4,414,221	+				+1.5
4,414,221	+				+0.4
4,414,222	-				+1.3
4,414,241	+				-1.5
4,414,488	+		DDA3937_RS19415	0.13	-1.8