Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19350

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,400,346	+		DDA3937_RS19345	0.49	-2.8
4,400,346	+		DDA3937_RS19345	0.49	-1.0
4,400,347	-		DDA3937_RS19345	0.50	+1.9
4,400,399	+		DDA3937_RS19345	0.53	-3.8
4,400,399	+				-0.0
4,400,399	+		DDA3937_RS19345	0.53	-2.3
4,400,399	+		DDA3937_RS19345	0.53	+0.6
4,400,399	+		DDA3937_RS19345	0.53	-0.1
4,400,399	+		DDA3937_RS19345	0.53	+1.6
4,400,399	+		DDA3937_RS19345	0.53	+1.2
4,400,400	-		DDA3937_RS19345	0.53	+0.0
4,400,400	-		DDA3937_RS19345	0.53	+1.0
4,400,400	-		DDA3937_RS19345	0.53	-0.4
4,400,400	-		DDA3937_RS19345	0.53	-2.0
4,400,400	-		DDA3937_RS19345	0.53	-1.0
4,400,400	-		DDA3937_RS19345	0.53	-2.9
4,400,549	+		DDA3937_RS19345	0.62	+3.0
4,400,550	-		DDA3937_RS19345	0.62	+1.4
4,400,550	-		DDA3937_RS19345	0.62	+1.7
4,400,634	+		DDA3937_RS19345	0.67	-1.2
4,400,634	+		DDA3937_RS19345	0.67	-0.2
4,400,634	+		DDA3937_RS19345	0.67	+0.4
4,400,634	+				+1.6
4,400,634	+		DDA3937_RS19345	0.67	-1.6
4,400,635	-		DDA3937_RS19345	0.67	+1.2
4,400,635	-		DDA3937_RS19345	0.67	-1.3
4,400,676	-		DDA3937_RS19345	0.70	+0.6
4,400,676	-		DDA3937_RS19345	0.70	-1.4
4,400,676	-		DDA3937_RS19345	0.70	+0.4
4,400,676	-		DDA3937_RS19345	0.70	-2.8
4,400,700	+		DDA3937_RS19345	0.71	-0.8
4,400,701	-		DDA3937_RS19345	0.71	+0.6
4,400,703	+		DDA3937_RS19345	0.71	+2.9
4,400,704	-		DDA3937_RS19345	0.71	-1.3
4,400,750	+		DDA3937_RS19345	0.74	-0.2
4,400,792	+		DDA3937_RS19345	0.77	-2.0
4,400,792	+		DDA3937_RS19345	0.77	-0.3
4,400,793	-		DDA3937_RS19345	0.77	+0.5
4,400,793	-				+2.1
4,400,796	+		DDA3937_RS19345	0.77	-0.4
4,400,796	+		DDA3937_RS19345	0.77	-1.3
4,400,796	+		DDA3937_RS19345	0.77	-2.7
4,400,797	-		DDA3937_RS19345	0.77	-2.4
4,400,797	-		DDA3937_RS19345	0.77	+1.6
4,400,797	-		DDA3937_RS19345	0.77	+0.0
4,400,804	+		DDA3937_RS19345	0.77	-0.0
4,400,805	-		DDA3937_RS19345	0.77	+2.2
4,400,815	-		DDA3937_RS19345	0.78	-3.3
4,400,818	+		DDA3937_RS19345	0.78	+0.8
4,400,818	+		DDA3937_RS19345	0.78	-0.9
4,400,819	-		DDA3937_RS19345	0.78	-2.0
4,400,819	-		DDA3937_RS19345	0.78	-0.0
4,400,819	-		DDA3937_RS19345	0.78	+0.4
4,400,819	-		DDA3937_RS19345	0.78	-1.8
4,400,819	-		DDA3937_RS19345	0.78	+0.2
4,400,823	+		DDA3937_RS19345	0.78	-1.6
4,400,823	+		DDA3937_RS19345	0.78	+0.9
4,400,823	+		DDA3937_RS19345	0.78	-1.4
4,400,823	+		DDA3937_RS19345	0.78	-2.3
4,400,823	+		DDA3937_RS19345	0.78	-2.3
4,400,824	-		DDA3937_RS19345	0.79	-0.9
4,400,824	-		DDA3937_RS19345	0.79	+0.1
4,400,824	-		DDA3937_RS19345	0.79	+1.2
4,400,824	-		DDA3937_RS19345	0.79	+0.1
4,400,824	-		DDA3937_RS19345	0.79	+2.6
4,400,825	+		DDA3937_RS19345	0.79	-1.1
4,400,825	+		DDA3937_RS19345	0.79	+0.1
4,400,825	+		DDA3937_RS19345	0.79	+0.2
4,400,826	-		DDA3937_RS19345	0.79	-1.9
4,400,826	-		DDA3937_RS19345	0.79	+1.2
4,400,826	-		DDA3937_RS19345	0.79	+0.1
4,400,835	-		DDA3937_RS19345	0.79	+1.1
4,400,843	+		DDA3937_RS19345	0.80	-0.3
4,400,843	+				-1.0
4,400,844	-		DDA3937_RS19345	0.80	-2.1
4,400,844	-		DDA3937_RS19345	0.80	-0.9
4,400,868	-		DDA3937_RS19345	0.81	-0.4
4,400,931	+		DDA3937_RS19345	0.85	-0.0
4,400,931	+		DDA3937_RS19345	0.85	+1.3
4,400,932	-		DDA3937_RS19345	0.85	-0.8
4,400,949	+		DDA3937_RS19345	0.86	+0.2
4,401,110	+				+0.0
4,401,110	+				-1.8
4,401,110	+				+1.3
4,401,111	-				+3.5
4,401,111	-				-0.4
4,401,129	+				-0.1
4,401,130	-				+0.8
4,401,146	+				-0.1
4,401,199	+				+1.0
4,401,199	+				-0.2
4,401,199	+				+1.2
4,401,199	+				+1.7
4,401,199	+				+2.2
4,401,199	+				-0.4
4,401,200	-				+0.3
4,401,200	-				-1.3
4,401,200	-				+0.2
4,401,200	-				-0.2
4,401,200	-				-1.6
4,401,200	-				-2.6
4,401,200	-				+0.0
4,401,207	+				-2.3
4,401,219	+				+1.6
4,401,220	-				+0.4
4,401,245	+		DDA3937_RS19350	0.11	-0.6
4,401,245	+		DDA3937_RS19350	0.11	-3.1
4,401,245	+		DDA3937_RS19350	0.11	-0.8
4,401,245	+		DDA3937_RS19350	0.11	+0.2
4,401,245	+		DDA3937_RS19350	0.11	+1.3
4,401,246	-		DDA3937_RS19350	0.11	-3.4
4,401,246	-		DDA3937_RS19350	0.11	+1.2
4,401,246	-		DDA3937_RS19350	0.11	+1.1
4,401,246	-		DDA3937_RS19350	0.11	+1.0
4,401,246	-		DDA3937_RS19350	0.11	-2.1
4,401,246	-		DDA3937_RS19350	0.11	-3.1
4,401,246	-		DDA3937_RS19350	0.11	-0.7
4,401,306	-		DDA3937_RS19350	0.20	-1.8
4,401,306	-		DDA3937_RS19350	0.20	-2.8
4,401,360	+		DDA3937_RS19350	0.28	+0.6
4,401,464	+		DDA3937_RS19350	0.43	-1.0
4,401,464	+		DDA3937_RS19350	0.43	+1.8
4,401,464	+		DDA3937_RS19350	0.43	-2.5
4,401,464	+		DDA3937_RS19350	0.43	-2.1
4,401,464	+		DDA3937_RS19350	0.43	-0.6
4,401,465	-		DDA3937_RS19350	0.44	-0.7
4,401,465	-		DDA3937_RS19350	0.44	-0.2
4,401,465	-		DDA3937_RS19350	0.44	-0.3
4,401,465	-		DDA3937_RS19350	0.44	+1.5
4,401,465	-		DDA3937_RS19350	0.44	+0.5
4,401,465	-		DDA3937_RS19350	0.44	+0.3
4,401,465	-		DDA3937_RS19350	0.44	-3.1
4,401,465	-		DDA3937_RS19350	0.44	-0.5
4,401,465	-		DDA3937_RS19350	0.44	-1.0
4,401,471	+		DDA3937_RS19350	0.45	+0.3
4,401,472	-		DDA3937_RS19350	0.45	-3.5
4,401,472	-		DDA3937_RS19350	0.45	+1.4
4,401,607	+		DDA3937_RS19350	0.65	-1.6
4,401,608	-		DDA3937_RS19350	0.65	-0.0
4,401,678	+		DDA3937_RS19350	0.75	-0.9
4,401,678	+		DDA3937_RS19350	0.75	-3.3
4,401,678	+		DDA3937_RS19350	0.75	-0.9
4,401,679	-		DDA3937_RS19350	0.76	+1.3
4,401,679	-		DDA3937_RS19350	0.76	+0.5
4,401,679	-		DDA3937_RS19350	0.76	-0.2
4,401,679	-		DDA3937_RS19350	0.76	-1.5
4,401,708	-		DDA3937_RS19350	0.80	+0.6
4,401,708	-		DDA3937_RS19350	0.80	+0.2
4,401,751	+		DDA3937_RS19350	0.86	+0.1
4,401,752	-		DDA3937_RS19350	0.87	+0.9
4,401,790	+				-1.4
4,401,790	+				+0.6
4,401,791	-				+1.4
4,401,813	-				-0.1
4,401,813	-				+1.0
4,401,870	+				-1.8
4,401,870	+				+0.3
4,401,871	-				-1.9
4,401,912	+				-2.4
4,401,913	-				+2.1
4,401,933	+				-0.5
4,401,934	-				+2.0
4,402,039	+		DDA3937_RS19355	0.18	+0.2
4,402,039	+		DDA3937_RS19355	0.18	-1.0
4,402,040	-		DDA3937_RS19355	0.18	+0.4
4,402,040	-		DDA3937_RS19355	0.18	+0.4
4,402,140	+		DDA3937_RS19355	0.27	-0.7
4,402,158	-		DDA3937_RS19355	0.28	-0.8
4,402,251	+		DDA3937_RS19355	0.37	+1.6
4,402,252	-		DDA3937_RS19355	0.37	+0.4
4,402,340	+		DDA3937_RS19355	0.45	+0.7
4,402,340	+		DDA3937_RS19355	0.45	+0.4
4,402,371	+				-0.8
4,402,413	+		DDA3937_RS19355	0.51	+1.4
4,402,414	-		DDA3937_RS19355	0.51	+0.1
4,402,474	+		DDA3937_RS19355	0.56	+0.5
4,402,474	+		DDA3937_RS19355	0.56	-1.7
4,402,475	-		DDA3937_RS19355	0.56	+0.7
4,402,544	+		DDA3937_RS19355	0.63	-1.8
4,402,544	+		DDA3937_RS19355	0.63	+1.1
4,402,544	+		DDA3937_RS19355	0.63	-0.8
4,402,544	+		DDA3937_RS19355	0.63	-1.0
4,402,544	+		DDA3937_RS19355	0.63	-0.1
4,402,544	+		DDA3937_RS19355	0.63	-0.1
4,402,544	+		DDA3937_RS19355	0.63	-2.9
4,402,544	+		DDA3937_RS19355	0.63	+0.8
4,402,544	+		DDA3937_RS19355	0.63	+0.1
4,402,544	+		DDA3937_RS19355	0.63	+0.6
4,402,544	+		DDA3937_RS19355	0.63	+1.1
4,402,545	-		DDA3937_RS19355	0.63	-0.5
4,402,545	-		DDA3937_RS19355	0.63	-3.0
4,402,545	-		DDA3937_RS19355	0.63	+0.2
4,402,545	-		DDA3937_RS19355	0.63	-3.3
4,402,545	-		DDA3937_RS19355	0.63	-2.5
4,402,545	-		DDA3937_RS19355	0.63	+0.1
4,402,545	-		DDA3937_RS19355	0.63	-1.0
4,402,545	-		DDA3937_RS19355	0.63	-1.2
4,402,545	-		DDA3937_RS19355	0.63	+1.7
4,402,545	-		DDA3937_RS19355	0.63	+1.2
4,402,545	-		DDA3937_RS19355	0.63	-3.0
4,402,610	+		DDA3937_RS19355	0.68	-0.9
4,402,610	+		DDA3937_RS19355	0.68	-2.4
4,402,610	+		DDA3937_RS19355	0.68	+3.2
4,402,610	+		DDA3937_RS19355	0.68	+1.2
4,402,610	+		DDA3937_RS19355	0.68	-0.8
4,402,610	+		DDA3937_RS19355	0.68	-1.3
4,402,610	+		DDA3937_RS19355	0.68	-0.1
4,402,613	+		DDA3937_RS19355	0.69	+1.5
4,402,614	-		DDA3937_RS19355	0.69	-2.8
4,402,614	-		DDA3937_RS19355	0.69	+0.5
4,402,614	-		DDA3937_RS19355	0.69	+0.5
4,402,614	-		DDA3937_RS19355	0.69	-1.4
4,402,674	+		DDA3937_RS19355	0.74	+1.9
4,402,674	+		DDA3937_RS19355	0.74	-3.0
4,402,674	+		DDA3937_RS19355	0.74	-2.7
4,402,675	-		DDA3937_RS19355	0.74	-1.8
4,402,784	+		DDA3937_RS19355	0.84	-0.8
4,402,784	+		DDA3937_RS19355	0.84	+0.6
4,402,785	-		DDA3937_RS19355	0.84	-2.5
4,402,785	-		DDA3937_RS19355	0.84	+1.4
4,402,785	-		DDA3937_RS19355	0.84	-2.1