Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17685

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,027,271	-				+1.3
4,027,271	-				+1.9
4,027,271	-				+0.1
4,027,272	+				-1.1
4,027,272	+				+1.5
4,027,272	+				+0.2
4,027,272	+				+0.5
4,027,273	-				+2.4
4,027,273	-				+0.1
4,027,273	-				+0.9
4,027,273	-				+0.2
4,027,273	-				-2.9
4,027,273	-				-0.8
4,027,273	-				+1.0
4,027,273	-				+2.1
4,027,348	+				-2.2
4,027,348	+				-2.8
4,027,348	+				+0.7
4,027,349	-				-1.2
4,027,349	-				+0.6
4,027,349	-				-1.2
4,027,349	-				+2.0
4,027,349	-				-3.5
4,027,349	-				+2.0
4,027,349	-				+1.1
4,027,349	-				-0.9
4,027,375	+				+0.8
4,027,389	-				+1.7
4,027,389	-				+0.2
4,027,389	-				+1.6
4,027,474	+		DDA3937_RS17680	0.14	-0.2
4,027,474	+		DDA3937_RS17680	0.14	+1.2
4,027,475	-		DDA3937_RS17680	0.14	-0.3
4,027,976	+		DDA3937_RS17680	0.75	-1.0
4,027,977	-		DDA3937_RS17680	0.75	-0.9
4,027,977	-		DDA3937_RS17680	0.75	-1.6
4,027,977	-		DDA3937_RS17680	0.75	-0.8
4,027,977	-		DDA3937_RS17680	0.75	-2.5
4,027,977	-		DDA3937_RS17680	0.75	+0.9
4,027,979	+		DDA3937_RS17680	0.75	-1.8
4,027,980	-		DDA3937_RS17680	0.75	-1.2
4,027,980	-		DDA3937_RS17680	0.75	-0.0
4,028,115	-				-2.4
4,028,144	+				+0.1
4,028,144	+				+0.3
4,028,145	-				+1.2
4,028,145	-				-1.0
4,028,145	-				-2.7
4,028,145	-				+1.9
4,028,145	-				-0.2
4,028,145	-				-1.0
4,028,203	-				+0.1
4,028,305	+				-0.6
4,028,305	+				-2.8
4,028,306	-				-2.0
4,028,306	-				+0.4
4,028,391	-				+1.6
4,028,398	+				+0.7
4,028,495	-		DDA3937_RS17685	0.12	+2.1
4,028,495	-		DDA3937_RS17685	0.12	+0.7
4,028,734	+		DDA3937_RS17685	0.22	-2.2
4,028,735	-		DDA3937_RS17685	0.22	-0.8
4,028,791	+		DDA3937_RS17685	0.24	-0.3
4,028,791	+		DDA3937_RS17685	0.24	-1.1
4,028,791	+		DDA3937_RS17685	0.24	+1.5
4,028,791	+		DDA3937_RS17685	0.24	-1.0
4,028,792	-		DDA3937_RS17685	0.24	-1.6
4,028,792	-		DDA3937_RS17685	0.24	-0.8
4,028,792	-		DDA3937_RS17685	0.24	+0.6
4,028,857	+		DDA3937_RS17685	0.27	-3.3
4,028,864	-		DDA3937_RS17685	0.27	+1.6
4,028,864	-		DDA3937_RS17685	0.27	+3.7
4,028,878	+		DDA3937_RS17685	0.28	+0.9
4,028,878	+		DDA3937_RS17685	0.28	+0.3
4,028,878	+		DDA3937_RS17685	0.28	-1.7
4,028,879	-		DDA3937_RS17685	0.28	-1.8
4,028,879	-		DDA3937_RS17685	0.28	+1.1
4,028,879	-		DDA3937_RS17685	0.28	+1.0
4,028,879	-		DDA3937_RS17685	0.28	+1.1
4,028,879	-		DDA3937_RS17685	0.28	+1.9
4,028,879	-		DDA3937_RS17685	0.28	-1.6
4,028,881	+		DDA3937_RS17685	0.28	+1.1
4,028,881	+		DDA3937_RS17685	0.28	-0.4
4,028,881	+		DDA3937_RS17685	0.28	+1.9
4,028,882	-		DDA3937_RS17685	0.28	-2.3
4,028,882	-		DDA3937_RS17685	0.28	+1.7
4,028,959	+		DDA3937_RS17685	0.31	+2.2
4,028,959	+		DDA3937_RS17685	0.31	+1.3
4,028,959	+		DDA3937_RS17685	0.31	+0.1
4,028,960	-		DDA3937_RS17685	0.31	+0.7
4,028,960	-		DDA3937_RS17685	0.31	-0.5
4,029,036	+		DDA3937_RS17685	0.34	+0.7
4,029,036	+		DDA3937_RS17685	0.34	-2.0
4,029,311	-		DDA3937_RS17685	0.45	+0.2
4,029,368	+		DDA3937_RS17685	0.47	+1.1
4,029,369	-		DDA3937_RS17685	0.47	+1.0
4,029,369	-		DDA3937_RS17685	0.47	-0.0
4,029,369	-		DDA3937_RS17685	0.47	-1.4
4,029,481	+		DDA3937_RS17685	0.52	-0.2
4,029,482	-		DDA3937_RS17685	0.52	-1.4
4,029,482	-		DDA3937_RS17685	0.52	+1.3
4,029,482	-		DDA3937_RS17685	0.52	-3.0
4,029,532	+		DDA3937_RS17685	0.54	-2.3
4,029,616	+		DDA3937_RS17685	0.57	-2.4
4,029,617	-		DDA3937_RS17685	0.57	-2.4
4,029,617	-		DDA3937_RS17685	0.57	-1.1
4,029,617	-		DDA3937_RS17685	0.57	-1.6
4,029,631	+		DDA3937_RS17685	0.58	+1.0
4,029,632	-		DDA3937_RS17685	0.58	+2.6
4,029,632	-		DDA3937_RS17685	0.58	-1.4
4,029,864	+		DDA3937_RS17685	0.67	+0.6
4,029,917	+		DDA3937_RS17685	0.69	+0.5
4,029,918	-		DDA3937_RS17685	0.70	-0.8
4,029,918	-		DDA3937_RS17685	0.70	-3.6
4,029,918	-		DDA3937_RS17685	0.70	-1.0
4,029,918	-		DDA3937_RS17685	0.70	+0.1
4,029,918	-		DDA3937_RS17685	0.70	+0.6
4,029,918	-		DDA3937_RS17685	0.70	-0.3
4,030,291	+		DDA3937_RS17685	0.84	-1.1
4,030,291	+		DDA3937_RS17685	0.84	+1.7
4,030,291	+		DDA3937_RS17685	0.84	+0.1
4,030,291	+		DDA3937_RS17685	0.84	-1.4
4,030,291	+		DDA3937_RS17685	0.84	+0.8
4,030,291	+		DDA3937_RS17685	0.84	-1.2
4,030,291	+		DDA3937_RS17685	0.84	+1.0
4,030,291	+		DDA3937_RS17685	0.84	-0.8
4,030,291	+		DDA3937_RS17685	0.84	+0.4
4,030,291	+		DDA3937_RS17685	0.84	+0.1
4,030,292	-		DDA3937_RS17685	0.85	+0.3
4,030,292	-		DDA3937_RS17685	0.85	-1.4
4,030,292	-		DDA3937_RS17685	0.85	+0.1
4,030,292	-		DDA3937_RS17685	0.85	+0.7
4,030,292	-		DDA3937_RS17685	0.85	-3.7
4,030,393	+		DDA3937_RS17685	0.89	+2.1
4,030,673	+				+2.1
4,030,673	+				+0.9
4,030,673	+				-0.9
4,030,673	+				+0.3
4,030,673	+				-2.1
4,030,673	+				-0.4
4,030,673	+				+0.6
4,030,673	+				-1.8
4,030,673	+				-0.1
4,030,674	-				+2.2
4,030,674	-				-1.3
4,030,674	-				+0.1
4,030,674	-				-0.7
4,030,674	-				+0.3
4,030,674	-				-1.9
4,030,913	-				-0.7
4,031,151	+		DDA3937_RS17690	0.12	-2.8
4,031,272	-		DDA3937_RS17690	0.15	+1.3
4,031,272	-		DDA3937_RS17690	0.15	-0.0
4,031,469	+		DDA3937_RS17690	0.21	-2.9
4,031,470	-		DDA3937_RS17690	0.21	-0.5
4,031,624	+		DDA3937_RS17690	0.25	+0.6
4,031,624	+		DDA3937_RS17690	0.25	-0.3
4,031,624	+		DDA3937_RS17690	0.25	+1.6
4,031,624	+		DDA3937_RS17690	0.25	+0.3
4,031,625	-		DDA3937_RS17690	0.25	+2.7
4,031,625	-		DDA3937_RS17690	0.25	+1.0