Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16775

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,816,294	-		DDA3937_RS16770	0.88	-0.5
3,816,335	+				-1.7
3,816,335	+				-1.1
3,816,336	-				-2.1
3,816,336	-				-0.1
3,816,336	-				-3.8
3,816,347	+				-2.2
3,816,348	-				-1.1
3,816,382	+				-2.7
3,816,382	+				-3.9
3,816,382	+				-1.3
3,816,382	+				-2.5
3,816,382	+				-1.5
3,816,382	+				-3.1
3,816,383	-				-0.1
3,816,383	-				+0.9
3,816,383	-				-0.5
3,816,383	-				-1.5
3,816,383	-				+0.2
3,816,414	+				-2.1
3,816,415	-				+1.5
3,816,442	+				+0.3
3,816,442	+				+0.9
3,816,462	+				-1.5
3,816,467	+				-1.0
3,816,467	+				-1.1
3,816,467	+				+1.5
3,816,467	+				-3.2
3,816,468	-				-0.8
3,816,468	-				-2.2
3,816,468	-				+1.9
3,816,468	-				-3.2
3,816,468	-				+0.8
3,816,468	-				+1.2
3,816,482	-				-1.7
3,816,500	-				+0.6
3,816,510	-				+1.0
3,816,510	-				-2.9
3,816,512	-				-1.7
3,816,521	-				+1.0
3,816,604	-				-2.2
3,816,636	-				+0.6
3,816,636	-				-0.9
3,816,636	-				+1.0
3,816,644	-				-2.1
3,816,644	-				+1.3
3,816,644	-				-1.1
3,816,644	-				+1.4
3,816,766	+				-0.9
3,816,766	+				-1.6
3,816,766	+				-1.9
3,816,766	+				+0.3
3,816,766	+				-0.5
3,816,766	+				+0.2
3,816,766	+				-0.2
3,816,777	+				-0.5
3,816,777	+				+1.3
3,816,777	+				-0.5
3,816,777	+				-1.6
3,816,777	+				-1.5
3,816,777	+				-1.9
3,816,777	+				-1.1
3,816,777	+				-3.3
3,816,781	+				+1.3
3,816,781	+				-0.9
3,816,781	+				+1.5
3,816,781	+				-1.6
3,816,781	+				+1.5
3,816,781	+				-1.1
3,816,781	+				-1.1
3,816,781	+				+0.9
3,816,781	+				-0.5
3,816,781	+				-0.1
3,816,782	-				-1.6
3,816,782	-				-1.2
3,816,782	-				-2.6
3,816,782	-				+1.3
3,816,782	-				-2.5
3,816,782	-				-1.3
3,816,782	-				-0.4
3,816,782	-				+1.0
3,816,784	+				-2.1
3,816,784	+				-0.1
3,816,784	+				-2.1
3,816,784	+				-4.0
3,816,785	-				+2.2
3,816,785	-				-1.3
3,816,785	-				+1.5
3,816,786	+				-3.6
3,816,786	+				-0.2
3,816,786	+				-1.1
3,816,787	-				-1.8
3,816,787	-				-2.6
3,816,797	+				-1.1
3,816,831	+				-0.2
3,816,831	+				-1.5
3,816,831	+				+1.1
3,816,831	+				+2.3
3,816,831	+				-1.5
3,816,832	-				-0.2
3,816,832	-				+0.5
3,816,832	-				-0.3
3,816,832	-				-1.1
3,816,832	-				-0.9
3,816,832	-				-0.8
3,816,832	-				-1.4
3,816,836	-				-2.6
3,816,836	-				-3.3
3,816,875	+				+1.4
3,816,875	+				-1.4
3,816,875	+				+2.1
3,816,901	+				-3.8
3,816,901	+				-1.6
3,816,901	+				+0.0
3,816,902	-				+1.0
3,816,902	-				-0.6
3,816,902	-				-1.9
3,816,902	-				-0.2
3,816,902	-				-0.8
3,816,902	-				-1.9
3,816,902	-				-1.5
3,816,902	-				+0.7
3,816,939	+				-1.1
3,816,945	+				+0.8
3,816,946	-				-0.8
3,816,950	+				+0.2
3,816,950	+				-1.3
3,816,950	+				-0.1
3,816,951	-				-3.7
3,816,951	-				-0.4
3,816,951	-				-1.9
3,816,951	-				+2.2
3,816,951	-				+0.5
3,816,951	-				-0.2
3,816,951	-				+0.5
3,816,951	-				-1.7
3,816,951	-				-2.1
3,816,993	+		DDA3937_RS16775	0.12	-0.4
3,816,993	+		DDA3937_RS16775	0.12	-1.4
3,816,993	+		DDA3937_RS16775	0.12	+0.8
3,816,993	+		DDA3937_RS16775	0.12	+1.6
3,816,993	+		DDA3937_RS16775	0.12	-1.9
3,816,993	+		DDA3937_RS16775	0.12	-2.7
3,816,993	+		DDA3937_RS16775	0.12	-2.4
3,816,993	+		DDA3937_RS16775	0.12	-2.4
3,816,994	-				+0.5
3,816,994	-		DDA3937_RS16775	0.13	-2.9
3,816,994	-		DDA3937_RS16775	0.13	+0.5
3,816,994	-		DDA3937_RS16775	0.13	+0.1
3,816,994	-		DDA3937_RS16775	0.13	-1.8
3,817,263	+		DDA3937_RS16775	0.76	+0.9
3,817,264	-		DDA3937_RS16775	0.76	+0.6
3,817,264	-		DDA3937_RS16775	0.76	-0.4
3,817,264	-		DDA3937_RS16775	0.76	+1.7
3,817,264	-		DDA3937_RS16775	0.76	-0.6
3,817,264	-		DDA3937_RS16775	0.76	-2.1
3,817,275	+		DDA3937_RS16775	0.79	-1.3
3,817,275	+		DDA3937_RS16775	0.79	-3.1
3,817,276	-		DDA3937_RS16775	0.79	+0.3
3,817,276	-		DDA3937_RS16775	0.79	+1.0
3,817,276	-		DDA3937_RS16775	0.79	+1.3
3,817,276	-		DDA3937_RS16775	0.79	+0.5
3,817,284	+		DDA3937_RS16775	0.81	+2.3
3,817,285	-		DDA3937_RS16775	0.81	+0.1
3,817,285	-		DDA3937_RS16775	0.81	+0.8
3,817,305	+		DDA3937_RS16775	0.86	-1.4
3,817,305	+		DDA3937_RS16775	0.86	-1.9
3,817,305	+		DDA3937_RS16775	0.86	-2.3
3,817,305	+		DDA3937_RS16775	0.86	+1.5
3,817,305	+		DDA3937_RS16775	0.86	-2.8
3,817,306	-		DDA3937_RS16775	0.86	-1.3
3,817,306	-		DDA3937_RS16775	0.86	-1.6
3,817,306	-		DDA3937_RS16775	0.86	-3.3
3,817,363	+				+1.4
3,817,394	-				+1.2
3,817,426	+				-1.2
3,817,426	+				-1.1
3,817,427	-				+3.3
3,817,473	-				-2.9
3,817,473	-				-1.8
3,817,535	+		DDA3937_RS16780	0.11	-0.8
3,817,656	+		DDA3937_RS16780	0.28	+0.9
3,817,656	+		DDA3937_RS16780	0.28	-0.0
3,817,659	+		DDA3937_RS16780	0.29	-0.6
3,817,717	-		DDA3937_RS16780	0.37	+0.3
3,817,762	+		DDA3937_RS16780	0.43	-0.5
3,817,763	-		DDA3937_RS16780	0.43	-1.5
3,817,763	-		DDA3937_RS16780	0.43	-2.2
3,817,763	-		DDA3937_RS16780	0.43	+0.1
3,817,778	+		DDA3937_RS16780	0.45	+1.2
3,817,909	+		DDA3937_RS16780	0.64	-1.9
3,817,938	-				-0.5
3,817,938	-		DDA3937_RS16780	0.68	+0.8
3,817,960	+		DDA3937_RS16780	0.71	+2.8
3,817,961	-		DDA3937_RS16780	0.71	-1.1
3,817,961	-		DDA3937_RS16780	0.71	-1.5
3,817,967	+		DDA3937_RS16780	0.72	-1.7
3,817,968	-		DDA3937_RS16780	0.72	+0.9
3,818,089	+		DDA3937_RS16780	0.89	-4.2
3,818,092	+		DDA3937_RS16780	0.89	+1.5
3,818,092	+		DDA3937_RS16780	0.89	-0.6
3,818,092	+		DDA3937_RS16780	0.89	-1.1
3,818,093	-		DDA3937_RS16780	0.89	-0.1
3,818,168	-				+0.5
3,818,197	+				+0.8
3,818,197	+				+2.1
3,818,197	+				+1.1
3,818,197	+				+0.1
3,818,197	+				+0.3
3,818,198	-				+0.5
3,818,198	-				+1.4
3,818,219	+				-3.3