Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS16195 and DDA3937_RS16200 are separated by 80 nucleotides DDA3937_RS16200 and DDA3937_RS16205 overlap by 4 nucleotides DDA3937_RS16205 and DDA3937_RS16210 are separated by 207 nucleotides DDA3937_RS16210 and DDA3937_RS16215 are separated by 58 nucleotides DDA3937_RS16215 and DDA3937_RS16220 are separated by 76 nucleotides DDA3937_RS16220 and DDA3937_RS16225 are separated by 7 nucleotides DDA3937_RS16225 and DDA3937_RS16230 are separated by 303 nucleotides
DDA3937_RS16195: DDA3937_RS16195 - glutamate--cysteine ligase, at 3,695,549 to 3,697,102
_RS16195
DDA3937_RS16200: DDA3937_RS16200 - DedA family protein, at 3,697,183 to 3,697,611
_RS16200
DDA3937_RS16205: DDA3937_RS16205 - fructose-1-phosphate/6-phosphogluconate phosphatase, at 3,697,608 to 3,698,174
_RS16205
DDA3937_RS16210: DDA3937_RS16210 - tRNA-Arg, at 3,698,382 to 3,698,458
_RS16210
DDA3937_RS16215: DDA3937_RS16215 - tRNA-Arg, at 3,698,517 to 3,698,593
_RS16215
DDA3937_RS16220: DDA3937_RS16220 - tRNA-Arg, at 3,698,670 to 3,698,746
_RS16220
DDA3937_RS16225: DDA3937_RS16225 - tRNA-Ser, at 3,698,754 to 3,698,846
_RS16225
DDA3937_RS16230: DDA3937_RS16230 - carbon storage regulator CsrA, at 3,699,150 to 3,699,335
_RS16230
Position (kb)
3697
3698
3699 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3696.650 kb on - strand at 3696.877 kb on + strand, within DDA3937_RS16195 at 3696.931 kb on + strand, within DDA3937_RS16195 at 3697.089 kb on - strand at 3697.126 kb on + strand at 3697.127 kb on - strand at 3697.136 kb on - strand at 3697.136 kb on - strand at 3697.136 kb on - strand at 3697.138 kb on + strand at 3697.139 kb on - strand at 3697.154 kb on + strand at 3697.154 kb on + strand at 3697.154 kb on + strand at 3697.154 kb on + strand at 3697.154 kb on + strand at 3697.154 kb on + strand at 3697.154 kb on + strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.155 kb on - strand at 3697.156 kb on + strand at 3697.156 kb on + strand at 3697.156 kb on + strand at 3697.156 kb on + strand at 3697.156 kb on + strand at 3697.157 kb on - strand at 3697.157 kb on - strand at 3697.157 kb on - strand at 3697.157 kb on - strand at 3697.157 kb on - strand at 3697.168 kb on - strand at 3697.177 kb on + strand at 3697.177 kb on + strand at 3697.177 kb on + strand at 3697.177 kb on + strand at 3697.178 kb on - strand at 3697.222 kb on + strand at 3697.222 kb on + strand at 3697.222 kb on + strand at 3697.222 kb on + strand at 3697.223 kb on - strand at 3697.223 kb on - strand at 3697.223 kb on - strand at 3697.226 kb on - strand, within DDA3937_RS16200 at 3697.226 kb on - strand, within DDA3937_RS16200 at 3697.226 kb on - strand, within DDA3937_RS16200 at 3697.226 kb on - strand, within DDA3937_RS16200 at 3697.232 kb on + strand, within DDA3937_RS16200 at 3697.257 kb on + strand, within DDA3937_RS16200 at 3697.258 kb on - strand, within DDA3937_RS16200 at 3697.258 kb on - strand, within DDA3937_RS16200 at 3697.258 kb on - strand, within DDA3937_RS16200 at 3697.258 kb on - strand, within DDA3937_RS16200 at 3697.261 kb on + strand, within DDA3937_RS16200 at 3697.262 kb on - strand, within DDA3937_RS16200 at 3697.262 kb on - strand at 3697.262 kb on - strand, within DDA3937_RS16200 at 3697.264 kb on + strand, within DDA3937_RS16200 at 3697.264 kb on + strand, within DDA3937_RS16200 at 3697.265 kb on - strand, within DDA3937_RS16200 at 3697.265 kb on - strand, within DDA3937_RS16200 at 3697.288 kb on + strand, within DDA3937_RS16200 at 3697.312 kb on + strand, within DDA3937_RS16200 at 3697.312 kb on + strand, within DDA3937_RS16200 at 3697.312 kb on + strand, within DDA3937_RS16200 at 3697.312 kb on + strand at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.313 kb on - strand, within DDA3937_RS16200 at 3697.315 kb on - strand, within DDA3937_RS16200 at 3697.338 kb on + strand, within DDA3937_RS16200 at 3697.338 kb on + strand, within DDA3937_RS16200 at 3697.339 kb on - strand, within DDA3937_RS16200 at 3697.345 kb on + strand, within DDA3937_RS16200 at 3697.345 kb on + strand, within DDA3937_RS16200 at 3697.346 kb on - strand, within DDA3937_RS16200 at 3697.407 kb on + strand, within DDA3937_RS16200 at 3697.408 kb on - strand, within DDA3937_RS16200 at 3697.437 kb on + strand, within DDA3937_RS16200 at 3697.437 kb on + strand, within DDA3937_RS16200 at 3697.437 kb on + strand, within DDA3937_RS16200 at 3697.438 kb on - strand, within DDA3937_RS16200 at 3697.458 kb on + strand, within DDA3937_RS16200 at 3697.458 kb on + strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.459 kb on - strand, within DDA3937_RS16200 at 3697.462 kb on - strand, within DDA3937_RS16200 at 3697.476 kb on + strand, within DDA3937_RS16200 at 3697.620 kb on + strand at 3697.621 kb on - strand at 3697.751 kb on + strand, within DDA3937_RS16205 at 3697.752 kb on - strand, within DDA3937_RS16205 at 3697.879 kb on + strand, within DDA3937_RS16205 at 3697.879 kb on + strand, within DDA3937_RS16205 at 3697.914 kb on + strand, within DDA3937_RS16205 at 3697.914 kb on + strand, within DDA3937_RS16205 at 3697.915 kb on - strand, within DDA3937_RS16205 at 3697.915 kb on - strand, within DDA3937_RS16205 at 3697.915 kb on - strand, within DDA3937_RS16205 at 3697.915 kb on - strand, within DDA3937_RS16205 at 3697.915 kb on - strand, within DDA3937_RS16205 at 3697.915 kb on - strand, within DDA3937_RS16205 at 3697.968 kb on - strand, within DDA3937_RS16205 at 3698.062 kb on + strand, within DDA3937_RS16205 at 3698.063 kb on - strand, within DDA3937_RS16205 at 3698.063 kb on - strand at 3698.069 kb on + strand, within DDA3937_RS16205 at 3698.069 kb on + strand, within DDA3937_RS16205 at 3698.070 kb on - strand, within DDA3937_RS16205 at 3698.070 kb on - strand, within DDA3937_RS16205 at 3698.070 kb on - strand, within DDA3937_RS16205 at 3698.074 kb on + strand, within DDA3937_RS16205 at 3698.074 kb on + strand, within DDA3937_RS16205 at 3698.074 kb on + strand, within DDA3937_RS16205 at 3698.085 kb on + strand, within DDA3937_RS16205 at 3698.086 kb on - strand, within DDA3937_RS16205 at 3698.086 kb on - strand, within DDA3937_RS16205 at 3698.170 kb on + strand at 3698.171 kb on - strand at 3698.175 kb on + strand at 3698.175 kb on + strand at 3698.175 kb on + strand at 3698.175 kb on + strand at 3698.175 kb on + strand at 3698.176 kb on - strand at 3698.206 kb on + strand at 3698.273 kb on + strand at 3698.329 kb on - strand at 3698.432 kb on + strand, within DDA3937_RS16210 at 3698.487 kb on + strand at 3698.488 kb on - strand at 3698.488 kb on - strand at 3698.606 kb on - strand at 3698.629 kb on - strand at 3698.654 kb on - strand at 3698.662 kb on - strand at 3698.662 kb on - strand at 3698.662 kb on - strand at 3698.667 kb on - strand at 3698.993 kb on - strand at 3699.012 kb on + strand at 3699.108 kb on + strand at 3699.108 kb on + strand at 3699.108 kb on + strand at 3699.109 kb on - strand at 3699.143 kb on + strand at 3699.154 kb on + strand at 3699.155 kb on - strand at 3699.155 kb on - strand at 3699.161 kb on + strand at 3699.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 3,696,650 - +1.5 3,696,877 + DDA3937_RS16195 0.85 +1.5 3,696,931 + DDA3937_RS16195 0.89 -1.8 3,697,089 - -2.5 3,697,126 + -0.1 3,697,127 - +0.1 3,697,136 - +0.6 3,697,136 - -0.5 3,697,136 - -1.2 3,697,138 + +1.1 3,697,139 - +0.5 3,697,154 + -0.8 3,697,154 + -2.6 3,697,154 + -1.7 3,697,154 + -0.8 3,697,154 + -1.5 3,697,154 + +0.5 3,697,154 + -1.0 3,697,155 - -3.2 3,697,155 - -0.0 3,697,155 - -0.6 3,697,155 - +2.2 3,697,155 - +1.4 3,697,155 - -1.0 3,697,155 - -2.0 3,697,155 - +1.2 3,697,156 + -3.5 3,697,156 + -1.6 3,697,156 + -0.5 3,697,156 + -0.3 3,697,156 + -0.1 3,697,157 - -2.7 3,697,157 - +1.4 3,697,157 - +0.2 3,697,157 - -1.8 3,697,157 - -2.4 3,697,168 - -2.3 3,697,177 + -0.6 3,697,177 + -2.2 3,697,177 + -0.1 3,697,177 + -1.8 3,697,178 - -1.3 3,697,222 + +3.1 3,697,222 + -0.6 3,697,222 + +0.2 3,697,222 + -0.1 3,697,223 - +0.2 3,697,223 - +0.8 3,697,223 - +0.1 3,697,226 - DDA3937_RS16200 0.10 +0.8 3,697,226 - DDA3937_RS16200 0.10 -0.5 3,697,226 - DDA3937_RS16200 0.10 +1.3 3,697,226 - DDA3937_RS16200 0.10 +1.4 3,697,232 + DDA3937_RS16200 0.11 -2.1 3,697,257 + DDA3937_RS16200 0.17 -2.9 3,697,258 - DDA3937_RS16200 0.17 +0.9 3,697,258 - DDA3937_RS16200 0.17 +0.5 3,697,258 - DDA3937_RS16200 0.17 +0.6 3,697,258 - DDA3937_RS16200 0.17 -0.5 3,697,261 + DDA3937_RS16200 0.18 -1.8 3,697,262 - DDA3937_RS16200 0.18 +0.4 3,697,262 - -0.1 3,697,262 - DDA3937_RS16200 0.18 -1.6 3,697,264 + DDA3937_RS16200 0.19 -1.1 3,697,264 + DDA3937_RS16200 0.19 +0.2 3,697,265 - DDA3937_RS16200 0.19 +1.2 3,697,265 - DDA3937_RS16200 0.19 -1.2 3,697,288 + DDA3937_RS16200 0.24 -1.3 3,697,312 + DDA3937_RS16200 0.30 -0.8 3,697,312 + DDA3937_RS16200 0.30 -0.8 3,697,312 + DDA3937_RS16200 0.30 -1.3 3,697,312 + +1.5 3,697,313 - DDA3937_RS16200 0.30 -0.3 3,697,313 - DDA3937_RS16200 0.30 -0.2 3,697,313 - DDA3937_RS16200 0.30 -1.5 3,697,313 - DDA3937_RS16200 0.30 +0.5 3,697,313 - DDA3937_RS16200 0.30 +1.8 3,697,313 - DDA3937_RS16200 0.30 +1.1 3,697,313 - DDA3937_RS16200 0.30 +0.9 3,697,313 - DDA3937_RS16200 0.30 -1.0 3,697,313 - DDA3937_RS16200 0.30 +0.9 3,697,313 - DDA3937_RS16200 0.30 -0.2 3,697,315 - DDA3937_RS16200 0.31 +1.5 3,697,338 + DDA3937_RS16200 0.36 -1.1 3,697,338 + DDA3937_RS16200 0.36 -1.1 3,697,339 - DDA3937_RS16200 0.36 +1.0 3,697,345 + DDA3937_RS16200 0.38 +2.6 3,697,345 + DDA3937_RS16200 0.38 -2.9 3,697,346 - DDA3937_RS16200 0.38 +1.5 3,697,407 + DDA3937_RS16200 0.52 -2.0 3,697,408 - DDA3937_RS16200 0.52 +2.4 3,697,437 + DDA3937_RS16200 0.59 -1.6 3,697,437 + DDA3937_RS16200 0.59 -0.3 3,697,437 + DDA3937_RS16200 0.59 -0.5 3,697,438 - DDA3937_RS16200 0.59 -2.1 3,697,458 + DDA3937_RS16200 0.64 +0.2 3,697,458 + DDA3937_RS16200 0.64 -1.6 3,697,459 - DDA3937_RS16200 0.64 -2.3 3,697,459 - DDA3937_RS16200 0.64 +0.6 3,697,459 - DDA3937_RS16200 0.64 +1.3 3,697,459 - DDA3937_RS16200 0.64 +0.9 3,697,459 - DDA3937_RS16200 0.64 +1.0 3,697,459 - DDA3937_RS16200 0.64 -2.6 3,697,459 - DDA3937_RS16200 0.64 -2.9 3,697,462 - DDA3937_RS16200 0.65 +1.1 3,697,476 + DDA3937_RS16200 0.68 -1.5 3,697,620 + -1.3 3,697,621 - -1.6 3,697,751 + DDA3937_RS16205 0.25 +1.5 3,697,752 - DDA3937_RS16205 0.25 +0.6 3,697,879 + DDA3937_RS16205 0.48 +0.3 3,697,879 + DDA3937_RS16205 0.48 -1.8 3,697,914 + DDA3937_RS16205 0.54 -1.3 3,697,914 + DDA3937_RS16205 0.54 +1.9 3,697,915 - DDA3937_RS16205 0.54 -0.3 3,697,915 - DDA3937_RS16205 0.54 -1.3 3,697,915 - DDA3937_RS16205 0.54 +1.6 3,697,915 - DDA3937_RS16205 0.54 +2.1 3,697,915 - DDA3937_RS16205 0.54 -0.6 3,697,915 - DDA3937_RS16205 0.54 +0.9 3,697,968 - DDA3937_RS16205 0.63 -2.5 3,698,062 + DDA3937_RS16205 0.80 -1.1 3,698,063 - DDA3937_RS16205 0.80 +0.9 3,698,063 - -0.8 3,698,069 + DDA3937_RS16205 0.81 -1.7 3,698,069 + DDA3937_RS16205 0.81 -1.3 3,698,070 - DDA3937_RS16205 0.81 -1.5 3,698,070 - DDA3937_RS16205 0.81 -2.1 3,698,070 - DDA3937_RS16205 0.81 -2.4 3,698,074 + DDA3937_RS16205 0.82 -1.3 3,698,074 + DDA3937_RS16205 0.82 -3.0 3,698,074 + DDA3937_RS16205 0.82 -0.1 3,698,085 + DDA3937_RS16205 0.84 -1.1 3,698,086 - DDA3937_RS16205 0.84 -2.1 3,698,086 - DDA3937_RS16205 0.84 -0.8 3,698,170 + -1.3 3,698,171 - -2.7 3,698,175 + +0.2 3,698,175 + -3.7 3,698,175 + +1.2 3,698,175 + +0.6 3,698,175 + +0.6 3,698,176 - -1.3 3,698,206 + +1.8 3,698,273 + -0.1 3,698,329 - -1.5 3,698,432 + DDA3937_RS16210 0.65 -0.8 3,698,487 + -1.9 3,698,488 - -1.3 3,698,488 - -2.2 3,698,606 - +2.2 3,698,629 - -0.8 3,698,654 - -0.7 3,698,662 - -0.8 3,698,662 - +2.3 3,698,662 - +1.0 3,698,667 - +0.8 3,698,993 - +0.6 3,699,012 + -0.8 3,699,108 + +3.6 3,699,108 + -1.0 3,699,108 + -0.8 3,699,109 - -1.7 3,699,143 + -2.8 3,699,154 + +1.4 3,699,155 - +2.6 3,699,155 - -2.8 3,699,161 + +0.3 3,699,162 - +2.8
Or see this region's nucleotide sequence