Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16205

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,696,650	-				+1.5
3,696,877	+		DDA3937_RS16195	0.85	+1.5
3,696,931	+		DDA3937_RS16195	0.89	-1.8
3,697,089	-				-2.5
3,697,126	+				-0.1
3,697,127	-				+0.1
3,697,136	-				+0.6
3,697,136	-				-0.5
3,697,136	-				-1.2
3,697,138	+				+1.1
3,697,139	-				+0.5
3,697,154	+				-0.8
3,697,154	+				-2.6
3,697,154	+				-1.7
3,697,154	+				-0.8
3,697,154	+				-1.5
3,697,154	+				+0.5
3,697,154	+				-1.0
3,697,155	-				-3.2
3,697,155	-				-0.0
3,697,155	-				-0.6
3,697,155	-				+2.2
3,697,155	-				+1.4
3,697,155	-				-1.0
3,697,155	-				-2.0
3,697,155	-				+1.2
3,697,156	+				-3.5
3,697,156	+				-1.6
3,697,156	+				-0.5
3,697,156	+				-0.3
3,697,156	+				-0.1
3,697,157	-				-2.7
3,697,157	-				+1.4
3,697,157	-				+0.2
3,697,157	-				-1.8
3,697,157	-				-2.4
3,697,168	-				-2.3
3,697,177	+				-0.6
3,697,177	+				-2.2
3,697,177	+				-0.1
3,697,177	+				-1.8
3,697,178	-				-1.3
3,697,222	+				+3.1
3,697,222	+				-0.6
3,697,222	+				+0.2
3,697,222	+				-0.1
3,697,223	-				+0.2
3,697,223	-				+0.8
3,697,223	-				+0.1
3,697,226	-		DDA3937_RS16200	0.10	+0.8
3,697,226	-		DDA3937_RS16200	0.10	-0.5
3,697,226	-		DDA3937_RS16200	0.10	+1.3
3,697,226	-		DDA3937_RS16200	0.10	+1.4
3,697,232	+		DDA3937_RS16200	0.11	-2.1
3,697,257	+		DDA3937_RS16200	0.17	-2.9
3,697,258	-		DDA3937_RS16200	0.17	+0.9
3,697,258	-		DDA3937_RS16200	0.17	+0.5
3,697,258	-		DDA3937_RS16200	0.17	+0.6
3,697,258	-		DDA3937_RS16200	0.17	-0.5
3,697,261	+		DDA3937_RS16200	0.18	-1.8
3,697,262	-		DDA3937_RS16200	0.18	+0.4
3,697,262	-				-0.1
3,697,262	-		DDA3937_RS16200	0.18	-1.6
3,697,264	+		DDA3937_RS16200	0.19	-1.1
3,697,264	+		DDA3937_RS16200	0.19	+0.2
3,697,265	-		DDA3937_RS16200	0.19	+1.2
3,697,265	-		DDA3937_RS16200	0.19	-1.2
3,697,288	+		DDA3937_RS16200	0.24	-1.3
3,697,312	+		DDA3937_RS16200	0.30	-0.8
3,697,312	+		DDA3937_RS16200	0.30	-0.8
3,697,312	+		DDA3937_RS16200	0.30	-1.3
3,697,312	+				+1.5
3,697,313	-		DDA3937_RS16200	0.30	-0.3
3,697,313	-		DDA3937_RS16200	0.30	-0.2
3,697,313	-		DDA3937_RS16200	0.30	-1.5
3,697,313	-		DDA3937_RS16200	0.30	+0.5
3,697,313	-		DDA3937_RS16200	0.30	+1.8
3,697,313	-		DDA3937_RS16200	0.30	+1.1
3,697,313	-		DDA3937_RS16200	0.30	+0.9
3,697,313	-		DDA3937_RS16200	0.30	-1.0
3,697,313	-		DDA3937_RS16200	0.30	+0.9
3,697,313	-		DDA3937_RS16200	0.30	-0.2
3,697,315	-		DDA3937_RS16200	0.31	+1.5
3,697,338	+		DDA3937_RS16200	0.36	-1.1
3,697,338	+		DDA3937_RS16200	0.36	-1.1
3,697,339	-		DDA3937_RS16200	0.36	+1.0
3,697,345	+		DDA3937_RS16200	0.38	+2.6
3,697,345	+		DDA3937_RS16200	0.38	-2.9
3,697,346	-		DDA3937_RS16200	0.38	+1.5
3,697,407	+		DDA3937_RS16200	0.52	-2.0
3,697,408	-		DDA3937_RS16200	0.52	+2.4
3,697,437	+		DDA3937_RS16200	0.59	-1.6
3,697,437	+		DDA3937_RS16200	0.59	-0.3
3,697,437	+		DDA3937_RS16200	0.59	-0.5
3,697,438	-		DDA3937_RS16200	0.59	-2.1
3,697,458	+		DDA3937_RS16200	0.64	+0.2
3,697,458	+		DDA3937_RS16200	0.64	-1.6
3,697,459	-		DDA3937_RS16200	0.64	-2.3
3,697,459	-		DDA3937_RS16200	0.64	+0.6
3,697,459	-		DDA3937_RS16200	0.64	+1.3
3,697,459	-		DDA3937_RS16200	0.64	+0.9
3,697,459	-		DDA3937_RS16200	0.64	+1.0
3,697,459	-		DDA3937_RS16200	0.64	-2.6
3,697,459	-		DDA3937_RS16200	0.64	-2.9
3,697,462	-		DDA3937_RS16200	0.65	+1.1
3,697,476	+		DDA3937_RS16200	0.68	-1.5
3,697,620	+				-1.3
3,697,621	-				-1.6
3,697,751	+		DDA3937_RS16205	0.25	+1.5
3,697,752	-		DDA3937_RS16205	0.25	+0.6
3,697,879	+		DDA3937_RS16205	0.48	+0.3
3,697,879	+		DDA3937_RS16205	0.48	-1.8
3,697,914	+		DDA3937_RS16205	0.54	-1.3
3,697,914	+		DDA3937_RS16205	0.54	+1.9
3,697,915	-		DDA3937_RS16205	0.54	-0.3
3,697,915	-		DDA3937_RS16205	0.54	-1.3
3,697,915	-		DDA3937_RS16205	0.54	+1.6
3,697,915	-		DDA3937_RS16205	0.54	+2.1
3,697,915	-		DDA3937_RS16205	0.54	-0.6
3,697,915	-		DDA3937_RS16205	0.54	+0.9
3,697,968	-		DDA3937_RS16205	0.63	-2.5
3,698,062	+		DDA3937_RS16205	0.80	-1.1
3,698,063	-		DDA3937_RS16205	0.80	+0.9
3,698,063	-				-0.8
3,698,069	+		DDA3937_RS16205	0.81	-1.7
3,698,069	+		DDA3937_RS16205	0.81	-1.3
3,698,070	-		DDA3937_RS16205	0.81	-1.5
3,698,070	-		DDA3937_RS16205	0.81	-2.1
3,698,070	-		DDA3937_RS16205	0.81	-2.4
3,698,074	+		DDA3937_RS16205	0.82	-1.3
3,698,074	+		DDA3937_RS16205	0.82	-3.0
3,698,074	+		DDA3937_RS16205	0.82	-0.1
3,698,085	+		DDA3937_RS16205	0.84	-1.1
3,698,086	-		DDA3937_RS16205	0.84	-2.1
3,698,086	-		DDA3937_RS16205	0.84	-0.8
3,698,170	+				-1.3
3,698,171	-				-2.7
3,698,175	+				+0.2
3,698,175	+				-3.7
3,698,175	+				+1.2
3,698,175	+				+0.6
3,698,175	+				+0.6
3,698,176	-				-1.3
3,698,206	+				+1.8
3,698,273	+				-0.1
3,698,329	-				-1.5
3,698,432	+		DDA3937_RS16210	0.65	-0.8
3,698,487	+				-1.9
3,698,488	-				-1.3
3,698,488	-				-2.2
3,698,606	-				+2.2
3,698,629	-				-0.8
3,698,654	-				-0.7
3,698,662	-				-0.8
3,698,662	-				+2.3
3,698,662	-				+1.0
3,698,667	-				+0.8
3,698,993	-				+0.6
3,699,012	+				-0.8
3,699,108	+				+3.6
3,699,108	+				-1.0
3,699,108	+				-0.8
3,699,109	-				-1.7
3,699,143	+				-2.8
3,699,154	+				+1.4
3,699,155	-				+2.6
3,699,155	-				-2.8
3,699,161	+				+0.3
3,699,162	-				+2.8