Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16150

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,687,591	+				+0.4
3,687,592	-				-0.8
3,687,615	+				-0.5
3,687,667	-				-1.1
3,687,723	+				-2.1
3,687,726	+				-0.8
3,687,786	-				+0.6
3,687,787	+				-0.1
3,687,787	+				+1.0
3,687,787	+				+0.9
3,687,788	-				+0.5
3,687,788	-				-1.8
3,687,788	-				+1.5
3,687,796	+				-1.7
3,687,797	-				-0.5
3,687,870	+		DDA3937_RS16145	0.25	-0.6
3,687,871	-		DDA3937_RS16145	0.26	-0.8
3,687,882	+		DDA3937_RS16145	0.29	+0.9
3,687,882	+				+0.5
3,687,883	-		DDA3937_RS16145	0.29	-3.3
3,687,884	+		DDA3937_RS16145	0.29	+0.2
3,687,884	+		DDA3937_RS16145	0.29	-0.2
3,687,884	+		DDA3937_RS16145	0.29	-2.2
3,687,884	+		DDA3937_RS16145	0.29	-2.8
3,687,884	+		DDA3937_RS16145	0.29	-2.5
3,687,884	+		DDA3937_RS16145	0.29	+0.1
3,687,884	+		DDA3937_RS16145	0.29	-2.3
3,687,884	+		DDA3937_RS16145	0.29	+0.1
3,687,884	+		DDA3937_RS16145	0.29	+1.0
3,687,884	+				+0.7
3,687,884	+		DDA3937_RS16145	0.29	-3.2
3,687,884	+		DDA3937_RS16145	0.29	-1.6
3,687,884	+		DDA3937_RS16145	0.29	-1.7
3,687,884	+		DDA3937_RS16145	0.29	+0.1
3,687,885	-		DDA3937_RS16145	0.29	-2.5
3,687,885	-		DDA3937_RS16145	0.29	-2.5
3,687,885	-		DDA3937_RS16145	0.29	+1.2
3,687,885	-		DDA3937_RS16145	0.29	+2.2
3,687,885	-		DDA3937_RS16145	0.29	-1.7
3,687,885	-		DDA3937_RS16145	0.29	-0.4
3,687,885	-		DDA3937_RS16145	0.29	-1.8
3,687,885	-		DDA3937_RS16145	0.29	+1.9
3,687,885	-		DDA3937_RS16145	0.29	-2.3
3,687,885	-		DDA3937_RS16145	0.29	-1.5
3,687,885	-		DDA3937_RS16145	0.29	-3.0
3,687,885	-		DDA3937_RS16145	0.29	-1.3
3,687,885	-		DDA3937_RS16145	0.29	-0.1
3,687,885	-		DDA3937_RS16145	0.29	-3.9
3,687,902	+		DDA3937_RS16145	0.34	-2.3
3,688,017	-		DDA3937_RS16145	0.64	-0.4
3,688,108	-		DDA3937_RS16145	0.88	-1.9
3,688,160	+				-2.3
3,688,174	-				-1.5
3,688,180	+				-2.4
3,688,181	-				+1.6
3,688,181	-				-0.8
3,688,183	+				+3.3
3,688,183	+				-3.0
3,688,183	+				+1.0
3,688,183	+				-0.7
3,688,184	-				+2.8
3,688,184	-				+1.5
3,688,195	+				-0.8
3,688,195	+				-1.8
3,688,204	-				-1.8
3,688,204	-				+0.5
3,688,204	-				-1.7
3,688,239	+				-2.0
3,688,239	+				-2.4
3,688,240	-				+0.2
3,688,240	-				-2.7
3,688,293	+				-0.6
3,688,303	-				-0.5
3,688,303	-				-1.3
3,688,342	+				-1.8
3,688,444	+				-3.8
3,688,444	+				+1.8
3,688,444	+				+1.1
3,688,444	+				-3.0
3,688,445	-				-1.3
3,688,483	-				+0.3
3,688,493	+				-0.1
3,688,493	+				+0.5
3,688,494	-				-0.5
3,688,494	-				-0.4
3,688,513	+				-3.2
3,688,514	-				-2.2
3,688,514	-				-0.3
3,688,514	-				+0.0
3,688,514	-				+1.9
3,688,517	-				-1.7
3,688,525	+				-3.2
3,688,526	-				+0.5
3,688,554	+				-3.9
3,688,554	+				-0.5
3,688,554	+				-1.4
3,688,554	+				-0.0
3,688,554	+				+0.4
3,688,555	-				-0.9
3,688,555	-				-1.5
3,688,555	-				-0.1
3,688,555	-				+0.4
3,688,555	-				-2.3
3,688,555	-				+0.0
3,688,555	-				-2.8
3,688,555	-				+0.2
3,688,555	-				+0.8
3,688,569	+				-0.5
3,688,569	+				-3.2
3,688,569	+				+0.1
3,688,570	-				+1.5
3,688,570	-				-2.6
3,688,570	-				-2.3
3,688,589	+				-3.6
3,688,589	+				-2.0
3,688,590	-				+1.0
3,688,595	-				+0.6
3,688,609	+				-1.1
3,688,609	+				+0.3
3,688,610	-				-2.5
3,688,688	-		DDA3937_RS16150	0.18	-0.8
3,688,688	-		DDA3937_RS16150	0.18	+2.3
3,688,747	+		DDA3937_RS16150	0.24	+2.6
3,688,748	-		DDA3937_RS16150	0.24	+1.3
3,688,760	+		DDA3937_RS16150	0.26	-3.2
3,688,760	+		DDA3937_RS16150	0.26	-0.8
3,688,761	-		DDA3937_RS16150	0.26	+0.4
3,688,761	-		DDA3937_RS16150	0.26	-0.5
3,688,814	+		DDA3937_RS16150	0.31	-0.3
3,688,814	+		DDA3937_RS16150	0.31	-2.1
3,688,815	-		DDA3937_RS16150	0.31	+0.6
3,688,815	-		DDA3937_RS16150	0.31	+1.7
3,688,815	-		DDA3937_RS16150	0.31	+0.9
3,688,876	-		DDA3937_RS16150	0.38	-1.8
3,688,876	-		DDA3937_RS16150	0.38	+1.0
3,688,902	+		DDA3937_RS16150	0.40	+0.1
3,688,953	-		DDA3937_RS16150	0.46	+0.6
3,689,085	+		DDA3937_RS16150	0.60	-1.7
3,689,085	+		DDA3937_RS16150	0.60	-0.5
3,689,085	+		DDA3937_RS16150	0.60	+1.6
3,689,086	-		DDA3937_RS16150	0.60	-2.9
3,689,086	-		DDA3937_RS16150	0.60	-1.8
3,689,135	+		DDA3937_RS16150	0.65	-1.5
3,689,136	-		DDA3937_RS16150	0.65	-2.4
3,689,190	+		DDA3937_RS16150	0.71	+1.5
3,689,191	-		DDA3937_RS16150	0.71	-2.5
3,689,241	+		DDA3937_RS16150	0.76	-0.8
3,689,286	+		DDA3937_RS16150	0.81	-2.5
3,689,286	+		DDA3937_RS16150	0.81	+1.6
3,689,286	+		DDA3937_RS16150	0.81	-2.6
3,689,287	-		DDA3937_RS16150	0.81	+1.4
3,689,295	+		DDA3937_RS16150	0.82	+0.6
3,689,295	+		DDA3937_RS16150	0.82	+0.7
3,689,295	+		DDA3937_RS16150	0.82	+1.7
3,689,296	-				-0.1
3,689,296	-		DDA3937_RS16150	0.82	+1.4
3,689,304	+		DDA3937_RS16150	0.83	-0.5
3,689,304	+		DDA3937_RS16150	0.83	+0.2
3,689,305	-		DDA3937_RS16150	0.83	-1.3
3,689,305	-		DDA3937_RS16150	0.83	-2.0
3,689,397	+				+1.6
3,689,397	+				-2.2
3,689,397	+				-0.2
3,689,397	+				+0.5
3,689,397	+				-1.1
3,689,397	+				+1.1
3,689,398	-				-2.1
3,689,398	-				+2.3
3,689,398	-				-1.5
3,689,398	-				-0.8
3,689,398	-				-2.9
3,689,398	-				-1.5
3,689,398	-				+0.2
3,689,404	+				+1.4
3,689,405	-				-1.1
3,689,405	-				-0.7
3,689,405	-				-4.0
3,689,426	+				+1.2
3,689,474	+				-1.5
3,689,474	+				+1.1
3,689,475	-				-3.8
3,689,486	-				-1.5
3,690,110	+				-1.5
3,690,131	+				-3.6
3,690,131	+				-0.5
3,690,161	+				-0.5
3,690,178	-				+1.2
3,690,178	-				+1.9
3,690,192	+				+0.3
3,690,195	-				+1.3
3,690,195	-				+4.3