Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16065

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,668,288	-		DDA3937_RS16055	0.89	-2.1
3,668,295	+		DDA3937_RS16055	0.90	-1.5
3,668,295	+		DDA3937_RS16055	0.90	-1.5
3,668,295	+		DDA3937_RS16055	0.90	-1.4
3,668,295	+		DDA3937_RS16055	0.90	-3.2
3,668,295	+		DDA3937_RS16055	0.90	-2.4
3,668,295	+		DDA3937_RS16055	0.90	-0.2
3,668,296	-				-2.2
3,668,296	-				-1.1
3,668,296	-				+0.2
3,668,296	-				-3.6
3,668,296	-				+2.0
3,668,326	+				+1.1
3,668,326	+				+0.6
3,668,336	+				-2.6
3,668,337	-				+1.9
3,668,337	-				+1.9
3,668,373	+				-1.5
3,668,374	-				-1.8
3,668,374	-				+0.4
3,668,376	+				-1.2
3,668,376	+				-1.4
3,668,377	-				-0.7
3,668,423	+				-2.4
3,668,423	+				-3.4
3,668,431	+				+1.3
3,668,451	+				-0.8
3,668,451	+				-0.5
3,668,451	+				-1.5
3,668,451	+				-3.8
3,668,452	-				-1.7
3,668,452	-				-2.7
3,668,452	-				-1.5
3,668,452	-				-2.2
3,668,452	-				-1.8
3,668,452	-				-2.1
3,668,522	-		DDA3937_RS16060	0.14	-3.3
3,668,536	-		DDA3937_RS16060	0.16	-4.2
3,668,580	-		DDA3937_RS16060	0.22	-2.6
3,668,629	+		DDA3937_RS16060	0.28	+0.3
3,668,630	-		DDA3937_RS16060	0.28	-1.0
3,668,675	+		DDA3937_RS16060	0.34	-1.1
3,668,675	+		DDA3937_RS16060	0.34	-1.5
3,668,675	+		DDA3937_RS16060	0.34	-2.0
3,668,675	+		DDA3937_RS16060	0.34	-0.1
3,668,675	+		DDA3937_RS16060	0.34	-1.1
3,668,675	+		DDA3937_RS16060	0.34	-1.1
3,668,675	+		DDA3937_RS16060	0.34	-2.7
3,668,675	+		DDA3937_RS16060	0.34	-2.3
3,668,675	+		DDA3937_RS16060	0.34	-2.5
3,668,675	+		DDA3937_RS16060	0.34	-0.5
3,668,675	+		DDA3937_RS16060	0.34	-1.1
3,668,675	+		DDA3937_RS16060	0.34	-2.4
3,668,676	-		DDA3937_RS16060	0.35	-1.1
3,668,676	-		DDA3937_RS16060	0.35	-3.8
3,668,676	-		DDA3937_RS16060	0.35	-2.7
3,668,676	-		DDA3937_RS16060	0.35	-0.1
3,668,676	-		DDA3937_RS16060	0.35	-2.2
3,668,676	-		DDA3937_RS16060	0.35	-3.8
3,668,676	-		DDA3937_RS16060	0.35	-1.6
3,668,676	-		DDA3937_RS16060	0.35	-1.4
3,668,676	-		DDA3937_RS16060	0.35	+1.4
3,668,676	-		DDA3937_RS16060	0.35	-1.8
3,668,676	-		DDA3937_RS16060	0.35	-0.1
3,668,676	-		DDA3937_RS16060	0.35	-1.7
3,668,676	-		DDA3937_RS16060	0.35	-1.5
3,668,676	-		DDA3937_RS16060	0.35	-2.9
3,668,680	+		DDA3937_RS16060	0.35	-1.3
3,668,680	+		DDA3937_RS16060	0.35	-2.7
3,668,680	+		DDA3937_RS16060	0.35	-2.5
3,668,680	+		DDA3937_RS16060	0.35	-1.5
3,668,680	+		DDA3937_RS16060	0.35	+0.1
3,668,680	+		DDA3937_RS16060	0.35	-3.8
3,668,681	-		DDA3937_RS16060	0.35	-3.2
3,668,681	-		DDA3937_RS16060	0.35	-3.8
3,668,757	-		DDA3937_RS16060	0.45	-1.5
3,668,757	-		DDA3937_RS16060	0.45	-2.8
3,668,764	-		DDA3937_RS16060	0.46	-3.3
3,668,764	-		DDA3937_RS16060	0.46	-0.8
3,668,768	+		DDA3937_RS16060	0.47	-3.5
3,668,769	-		DDA3937_RS16060	0.47	-3.8
3,668,769	-		DDA3937_RS16060	0.47	-2.0
3,668,769	-		DDA3937_RS16060	0.47	-1.1
3,668,769	-		DDA3937_RS16060	0.47	-2.0
3,668,778	+		DDA3937_RS16060	0.48	-2.2
3,668,778	+		DDA3937_RS16060	0.48	-1.4
3,668,779	-		DDA3937_RS16060	0.48	-1.2
3,668,779	-		DDA3937_RS16060	0.48	-1.7
3,668,795	+		DDA3937_RS16060	0.50	-2.2
3,668,796	-		DDA3937_RS16060	0.50	-1.8
3,668,801	-		DDA3937_RS16060	0.51	-2.1
3,668,834	+		DDA3937_RS16060	0.55	-2.3
3,668,835	-		DDA3937_RS16060	0.56	-0.2
3,668,835	-		DDA3937_RS16060	0.56	-0.3
3,668,896	+		DDA3937_RS16060	0.64	-1.4
3,668,896	+		DDA3937_RS16060	0.64	-3.2
3,668,896	+		DDA3937_RS16060	0.64	-0.7
3,668,896	+		DDA3937_RS16060	0.64	-2.4
3,668,896	+		DDA3937_RS16060	0.64	+0.6
3,668,896	+		DDA3937_RS16060	0.64	-2.5
3,668,896	+		DDA3937_RS16060	0.64	-0.5
3,668,896	+		DDA3937_RS16060	0.64	-0.5
3,668,896	+		DDA3937_RS16060	0.64	+0.8
3,668,897	-		DDA3937_RS16060	0.64	-1.6
3,668,897	-		DDA3937_RS16060	0.64	-2.9
3,668,897	-		DDA3937_RS16060	0.64	-1.1
3,668,897	-		DDA3937_RS16060	0.64	-2.5
3,668,897	-		DDA3937_RS16060	0.64	-2.3
3,668,897	-		DDA3937_RS16060	0.64	-2.1
3,668,914	-				-0.5
3,668,914	-		DDA3937_RS16060	0.66	-2.0
3,668,914	-		DDA3937_RS16060	0.66	-1.5
3,668,920	+		DDA3937_RS16060	0.67	-2.8
3,668,976	+		DDA3937_RS16060	0.74	-3.0
3,668,976	+		DDA3937_RS16060	0.74	-2.8
3,668,977	-		DDA3937_RS16060	0.74	-0.8
3,669,052	+		DDA3937_RS16060	0.84	-1.5
3,669,053	-		DDA3937_RS16060	0.84	-4.3
3,669,145	+				-2.3
3,669,145	+				-0.4
3,669,220	+				-2.3
3,669,238	+				-0.8
3,669,238	+				-0.7
3,669,238	+				-0.5
3,669,238	+				-1.1
3,669,238	+				-0.4
3,669,239	-				-1.5
3,669,239	-				-0.8
3,669,239	-				-0.5
3,669,239	-				-1.8
3,669,240	+				-0.1
3,669,240	+				-1.8
3,669,240	+				+3.5
3,669,240	+				-1.1
3,669,240	+				-0.3
3,669,241	-				+1.0
3,669,241	-				-1.8
3,669,249	+				-1.7
3,669,539	+		DDA3937_RS16065	0.21	+0.3
3,669,559	+		DDA3937_RS16065	0.23	-1.7
3,669,560	-		DDA3937_RS16065	0.23	-1.1
3,669,565	+		DDA3937_RS16065	0.23	-1.8
3,669,594	+		DDA3937_RS16065	0.25	+1.0
3,669,594	+		DDA3937_RS16065	0.25	-1.2
3,669,594	+		DDA3937_RS16065	0.25	+0.4
3,669,594	+		DDA3937_RS16065	0.25	-0.8
3,669,674	+				+0.8
3,669,737	-		DDA3937_RS16065	0.35	-1.7
3,669,931	+		DDA3937_RS16065	0.49	-0.8
3,669,946	+		DDA3937_RS16065	0.50	-0.1
3,669,946	+		DDA3937_RS16065	0.50	-1.7
3,669,946	+		DDA3937_RS16065	0.50	-1.3
3,669,947	-		DDA3937_RS16065	0.50	-0.5
3,670,121	-		DDA3937_RS16065	0.63	-1.3
3,670,132	+		DDA3937_RS16065	0.64	-1.5
3,670,443	+		DDA3937_RS16065	0.86	-2.0
3,670,480	+		DDA3937_RS16065	0.88	+1.1
3,670,609	+				-0.5
3,670,610	-				-0.5
3,670,610	-				-2.8
3,670,621	-				-3.2
3,670,621	-				-1.3
3,670,652	+				-1.7
3,670,652	+				-0.8
3,670,671	+				+0.5
3,670,722	-				-2.2
3,670,722	-				+1.7
3,670,736	-				+0.5
3,670,918	+		DDA3937_RS16070	0.27	-2.8
3,670,991	-				-1.1
3,670,991	-		DDA3937_RS16070	0.36	-2.3
3,670,991	-		DDA3937_RS16070	0.36	-1.1
3,670,991	-		DDA3937_RS16070	0.36	-1.7
3,671,032	+		DDA3937_RS16070	0.42	+0.9
3,671,045	+		DDA3937_RS16070	0.43	-2.8
3,671,046	-		DDA3937_RS16070	0.43	-0.1
3,671,046	-		DDA3937_RS16070	0.43	-1.2
3,671,067	+		DDA3937_RS16070	0.46	-1.1
3,671,067	+				+1.5
3,671,067	+		DDA3937_RS16070	0.46	+3.7
3,671,068	-		DDA3937_RS16070	0.46	+0.7
3,671,074	+		DDA3937_RS16070	0.47	-1.5
3,671,133	+		DDA3937_RS16070	0.54	-1.7
3,671,133	+		DDA3937_RS16070	0.54	-1.7
3,671,133	+				+0.5
3,671,133	+		DDA3937_RS16070	0.54	-0.2
3,671,133	+		DDA3937_RS16070	0.54	-0.8
3,671,133	+		DDA3937_RS16070	0.54	-1.3
3,671,133	+		DDA3937_RS16070	0.54	-1.5
3,671,133	+		DDA3937_RS16070	0.54	-2.0
3,671,133	+				+4.8
3,671,133	+		DDA3937_RS16070	0.54	-1.2
3,671,134	-				-0.1
3,671,134	-				+0.5
3,671,134	-		DDA3937_RS16070	0.54	-0.3
3,671,134	-		DDA3937_RS16070	0.54	-0.0
3,671,134	-		DDA3937_RS16070	0.54	+0.8
3,671,137	+		DDA3937_RS16070	0.55	+1.4
3,671,137	+		DDA3937_RS16070	0.55	+1.5
3,671,137	+				-0.5
3,671,137	+		DDA3937_RS16070	0.55	-2.7
3,671,137	+				+0.5
3,671,138	-		DDA3937_RS16070	0.55	-0.0
3,671,199	-		DDA3937_RS16070	0.63	+0.5
3,671,199	-		DDA3937_RS16070	0.63	-2.4
3,671,218	-		DDA3937_RS16070	0.65	-1.3
3,671,416	-				-0.5
3,671,440	+				-1.9
3,671,440	+				-2.6
3,671,440	+				+1.1
3,671,440	+				-0.8
3,671,466	+				-2.4
3,671,466	+				-2.4
3,671,466	+				-0.1
3,671,466	+				-1.7
3,671,467	-				-0.5
3,671,467	-				+1.9
3,671,478	+				-0.8
3,671,478	+				-1.2
3,671,479	-				-2.1
3,671,479	-				+0.4
3,671,507	+				-2.3
3,671,507	+				+1.5
3,671,507	+				-2.3
3,671,508	-				+1.1
3,671,508	-				-0.5
3,671,525	-				-0.8
3,671,534	-				+5.0
3,671,562	+				+0.1
3,671,563	-				+0.3
3,671,564	+				-1.5
3,671,564	+				-2.3
3,671,564	+				-2.1
3,671,564	+				-2.3
3,671,565	-				-2.0
3,671,565	-				-3.3
3,671,565	-				+1.6
3,671,602	+				-1.5
3,671,602	+				+0.6
3,671,602	+				-1.7
3,671,602	+				-0.5
3,671,602	+				-1.8
3,671,603	-				+1.3
3,671,603	-				+2.2
3,671,603	-				-2.3
3,671,603	-				-0.8
3,671,603	-				-1.6
3,671,603	-				+1.8
3,671,605	+				-2.0
3,671,605	+				+0.2
3,671,605	+				-2.3
3,671,605	+				-2.8
3,671,605	+				-3.0
3,671,605	+				-2.7
3,671,606	-				-2.2
3,671,606	-				-0.1
3,671,606	-				-2.5
3,671,606	-				+1.8
3,671,606	-				-2.0
3,671,606	-				-1.7
3,671,606	-				-3.7
3,671,609	+				+1.2
3,671,609	+				-1.8
3,671,609	+				+1.0
3,671,609	+				-1.1
3,671,609	+				-0.8
3,671,609	+				-2.3
3,671,609	+				+0.8
3,671,610	-				-1.3
3,671,610	-				-2.1
3,671,610	-				-2.1
3,671,610	-				-2.4