Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15380

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,527,784	+				+1.6
3,527,784	+				-0.7
3,527,784	+				-0.1
3,527,785	-				+0.2
3,527,785	-				+0.3
3,527,785	-				-2.8
3,527,785	-				-0.5
3,527,785	-				+2.6
3,527,828	+				-1.1
3,527,828	+				-0.3
3,527,880	-				-0.8
3,528,092	+		DDA3937_RS15375	0.37	+2.2
3,528,098	+		DDA3937_RS15375	0.37	-0.8
3,528,099	-		DDA3937_RS15375	0.38	-0.3
3,528,099	-		DDA3937_RS15375	0.38	-0.8
3,528,127	+		DDA3937_RS15375	0.41	-2.2
3,528,127	+		DDA3937_RS15375	0.41	-1.5
3,528,127	+		DDA3937_RS15375	0.41	+1.1
3,528,127	+		DDA3937_RS15375	0.41	-2.3
3,528,128	-		DDA3937_RS15375	0.41	-2.2
3,528,128	-		DDA3937_RS15375	0.41	+0.8
3,528,128	-		DDA3937_RS15375	0.41	-2.2
3,528,128	-		DDA3937_RS15375	0.41	+1.7
3,528,128	-		DDA3937_RS15375	0.41	+0.4
3,528,131	+		DDA3937_RS15375	0.42	+1.4
3,528,131	+		DDA3937_RS15375	0.42	-1.3
3,528,131	+		DDA3937_RS15375	0.42	+2.3
3,528,131	+		DDA3937_RS15375	0.42	-0.2
3,528,165	+		DDA3937_RS15375	0.46	-1.3
3,528,165	+		DDA3937_RS15375	0.46	-1.2
3,528,166	-		DDA3937_RS15375	0.46	+0.4
3,528,256	+		DDA3937_RS15375	0.58	+0.6
3,528,256	+		DDA3937_RS15375	0.58	-2.1
3,528,256	+		DDA3937_RS15375	0.58	+0.3
3,528,256	+		DDA3937_RS15375	0.58	-2.0
3,528,256	+		DDA3937_RS15375	0.58	-1.7
3,528,257	-		DDA3937_RS15375	0.58	+0.7
3,528,257	-		DDA3937_RS15375	0.58	+0.9
3,528,257	-		DDA3937_RS15375	0.58	+1.1
3,528,257	-		DDA3937_RS15375	0.58	+1.7
3,528,257	-		DDA3937_RS15375	0.58	-0.6
3,528,257	-		DDA3937_RS15375	0.58	-1.7
3,528,257	-		DDA3937_RS15375	0.58	-3.1
3,528,257	-		DDA3937_RS15375	0.58	+0.6
3,528,302	-		DDA3937_RS15375	0.64	+1.6
3,528,391	+		DDA3937_RS15375	0.75	+0.7
3,528,391	+		DDA3937_RS15375	0.75	-1.5
3,528,391	+		DDA3937_RS15375	0.75	-3.1
3,528,392	-		DDA3937_RS15375	0.75	-0.3
3,528,577	+				-2.1
3,528,578	-				+1.3
3,528,578	-				-1.1
3,528,578	-				-2.0
3,528,578	-				-0.9
3,528,611	+				-1.5
3,528,611	+				-3.4
3,528,611	+				-0.1
3,528,612	-				+0.9
3,528,612	-				-2.8
3,528,612	-				+0.5
3,528,617	-				-2.9
3,528,667	+				-0.8
3,528,667	+				-1.1
3,528,668	-				+0.2
3,528,668	-				+1.8
3,528,669	+				+0.9
3,528,669	+				+0.5
3,528,669	+				+1.9
3,528,669	+				+0.8
3,528,669	+				-0.4
3,528,669	+				-1.7
3,528,669	+				-0.7
3,528,669	+				-2.6
3,528,670	-				-2.7
3,528,670	-				+0.2
3,528,670	-				-1.1
3,528,670	-				+1.0
3,528,670	-				+2.6
3,528,695	+				+1.7
3,528,695	+				-0.8
3,528,695	+				+0.6
3,528,696	-				+2.0
3,528,697	+				+1.0
3,528,714	+				-1.1
3,528,714	+				-1.8
3,528,714	+				-1.5
3,528,714	+				-2.0
3,528,715	-				-1.5
3,528,715	-				-0.1
3,528,771	-				-3.1
3,528,771	-				-2.1
3,528,801	+				-0.3
3,528,801	+				-0.1
3,528,801	+				-1.3
3,528,802	-				-1.8
3,528,802	-				+1.0
3,528,802	-				-1.3
3,528,802	-				+0.8
3,528,802	-				+0.4
3,528,802	-				-1.0
3,528,802	-				-0.7
3,528,802	-				-1.1
3,528,802	-				-1.8
3,528,860	-				-1.8
3,528,863	+				-2.2
3,528,864	-				-1.5
3,528,864	-				-0.6
3,528,864	-				-1.3
3,528,883	+				-1.0
3,528,911	+				-2.4
3,528,912	-				-1.3
3,528,912	-				-0.8
3,528,912	-				+1.0
3,528,918	-				-0.3
3,528,935	+		DDA3937_RS15380	0.10	-1.3
3,528,935	+		DDA3937_RS15380	0.10	-2.4
3,528,937	+		DDA3937_RS15380	0.10	-2.8
3,528,937	+		DDA3937_RS15380	0.10	+0.4
3,528,938	-				+0.5
3,528,960	+		DDA3937_RS15380	0.12	-1.8
3,528,960	+		DDA3937_RS15380	0.12	+0.6
3,528,960	+		DDA3937_RS15380	0.12	-0.5
3,528,961	-		DDA3937_RS15380	0.12	+0.7
3,528,961	-		DDA3937_RS15380	0.12	+0.6
3,528,961	-		DDA3937_RS15380	0.12	-2.3
3,528,982	-		DDA3937_RS15380	0.13	-0.5
3,528,982	-		DDA3937_RS15380	0.13	+0.5
3,529,009	+				-0.5
3,529,010	-		DDA3937_RS15380	0.15	-2.6
3,529,010	-		DDA3937_RS15380	0.15	-0.8
3,529,010	-		DDA3937_RS15380	0.15	-2.2
3,529,023	+		DDA3937_RS15380	0.15	+1.5
3,529,024	-		DDA3937_RS15380	0.16	+1.5
3,529,024	-		DDA3937_RS15380	0.16	+1.8
3,529,043	+		DDA3937_RS15380	0.17	-1.3
3,529,049	+		DDA3937_RS15380	0.17	+0.5
3,529,057	+		DDA3937_RS15380	0.18	-1.8
3,529,057	+		DDA3937_RS15380	0.18	+1.3
3,529,058	-		DDA3937_RS15380	0.18	-0.3
3,529,188	+		DDA3937_RS15380	0.25	+1.9
3,529,192	+		DDA3937_RS15380	0.26	+1.2
3,529,192	+		DDA3937_RS15380	0.26	-1.1
3,529,192	+		DDA3937_RS15380	0.26	-2.2
3,529,192	+		DDA3937_RS15380	0.26	+2.2
3,529,193	-		DDA3937_RS15380	0.26	-3.2
3,529,193	-		DDA3937_RS15380	0.26	+1.0
3,529,193	-		DDA3937_RS15380	0.26	+2.2
3,529,193	-		DDA3937_RS15380	0.26	-1.8
3,529,193	-		DDA3937_RS15380	0.26	-1.5
3,529,193	-		DDA3937_RS15380	0.26	-1.8
3,529,196	+		DDA3937_RS15380	0.26	+1.1
3,529,197	-		DDA3937_RS15380	0.26	+0.8
3,529,200	-		DDA3937_RS15380	0.26	+1.1
3,529,200	-		DDA3937_RS15380	0.26	+0.5
3,529,220	+		DDA3937_RS15380	0.27	-0.6
3,529,220	+		DDA3937_RS15380	0.27	+0.1
3,529,221	-		DDA3937_RS15380	0.27	-1.7
3,529,227	-		DDA3937_RS15380	0.28	-1.5
3,529,269	+		DDA3937_RS15380	0.30	-1.1
3,529,283	+		DDA3937_RS15380	0.31	-0.1
3,529,284	-		DDA3937_RS15380	0.31	-2.0
3,529,338	+		DDA3937_RS15380	0.34	+2.7
3,529,349	+		DDA3937_RS15380	0.35	-0.8
3,529,357	+		DDA3937_RS15380	0.35	-1.9
3,529,358	-		DDA3937_RS15380	0.36	-0.5
3,529,430	+		DDA3937_RS15380	0.40	-1.3
3,529,442	+		DDA3937_RS15380	0.41	+2.8
3,529,443	-		DDA3937_RS15380	0.41	-0.5
3,529,444	+		DDA3937_RS15380	0.41	-2.5
3,529,468	+		DDA3937_RS15380	0.42	-1.5
3,529,478	+		DDA3937_RS15380	0.43	-0.1
3,529,500	+		DDA3937_RS15380	0.44	+0.9
3,529,501	-		DDA3937_RS15380	0.44	-1.7
3,529,503	-		DDA3937_RS15380	0.44	+1.6
3,529,504	+				-0.5
3,529,505	-		DDA3937_RS15380	0.44	-1.3
3,529,505	-		DDA3937_RS15380	0.44	+0.2
3,529,532	+		DDA3937_RS15380	0.46	+0.1
3,529,532	+		DDA3937_RS15380	0.46	-3.1
3,529,532	+		DDA3937_RS15380	0.46	-1.1
3,529,533	-		DDA3937_RS15380	0.46	-1.1
3,529,533	-		DDA3937_RS15380	0.46	-0.5
3,529,535	+		DDA3937_RS15380	0.46	-1.1
3,529,536	-		DDA3937_RS15380	0.46	-0.5
3,529,538	+		DDA3937_RS15380	0.46	-4.1
3,529,543	+		DDA3937_RS15380	0.47	-1.2
3,529,553	+		DDA3937_RS15380	0.47	+0.1
3,529,554	-		DDA3937_RS15380	0.47	+2.8
3,529,554	-		DDA3937_RS15380	0.47	-1.4
3,529,588	+		DDA3937_RS15380	0.49	-1.1
3,529,588	+		DDA3937_RS15380	0.49	-1.3
3,529,593	+		DDA3937_RS15380	0.50	-2.8
3,529,611	+		DDA3937_RS15380	0.51	-2.0
3,529,611	+		DDA3937_RS15380	0.51	-3.3
3,529,612	-		DDA3937_RS15380	0.51	+0.7
3,529,612	-		DDA3937_RS15380	0.51	-1.3
3,529,687	+		DDA3937_RS15380	0.55	-2.0
3,529,687	+		DDA3937_RS15380	0.55	+0.5
3,529,688	-		DDA3937_RS15380	0.55	-4.1
3,529,688	-		DDA3937_RS15380	0.55	-1.9
3,529,692	+		DDA3937_RS15380	0.56	+0.5
3,529,692	+		DDA3937_RS15380	0.56	-1.2
3,529,692	+		DDA3937_RS15380	0.56	+2.5
3,529,693	-		DDA3937_RS15380	0.56	+1.5
3,529,739	+		DDA3937_RS15380	0.58	-2.2
3,529,740	-		DDA3937_RS15380	0.58	-0.5
3,529,745	-		DDA3937_RS15380	0.59	+1.5
3,529,748	+		DDA3937_RS15380	0.59	+0.5
3,529,788	+		DDA3937_RS15380	0.61	-1.7
3,529,788	+		DDA3937_RS15380	0.61	-0.6
3,529,789	-		DDA3937_RS15380	0.61	-1.7
3,529,833	+				-0.1
3,529,833	+		DDA3937_RS15380	0.64	-2.5
3,529,843	+		DDA3937_RS15380	0.65	+1.7
3,529,843	+		DDA3937_RS15380	0.65	+0.2
3,529,843	+		DDA3937_RS15380	0.65	-2.1
3,529,843	+		DDA3937_RS15380	0.65	-2.8
3,529,843	+		DDA3937_RS15380	0.65	-0.8
3,529,844	-		DDA3937_RS15380	0.65	-2.1
3,529,844	-		DDA3937_RS15380	0.65	-2.1
3,529,844	-		DDA3937_RS15380	0.65	-1.8
3,529,844	-		DDA3937_RS15380	0.65	-0.5
3,529,844	-		DDA3937_RS15380	0.65	+1.1
3,529,928	-		DDA3937_RS15380	0.70	+0.9
3,529,950	-		DDA3937_RS15380	0.71	-2.0
3,529,958	+		DDA3937_RS15380	0.72	-2.3
3,529,958	+		DDA3937_RS15380	0.72	-1.3
3,529,959	-		DDA3937_RS15380	0.72	+1.1
3,530,052	-		DDA3937_RS15380	0.77	-0.8
3,530,097	+		DDA3937_RS15380	0.80	-0.4
3,530,164	+		DDA3937_RS15380	0.84	+0.3
3,530,164	+		DDA3937_RS15380	0.84	+2.3
3,530,165	-		DDA3937_RS15380	0.84	-0.6
3,530,255	+		DDA3937_RS15380	0.89	-1.8
3,530,256	-		DDA3937_RS15380	0.89	+0.3
3,530,298	-				-1.4
3,530,327	+				-0.2
3,530,328	-				-1.1
3,530,344	+				-1.9
3,530,372	+				+1.6
3,530,437	+				-2.7
3,530,465	+				-1.2
3,530,515	-				-0.8
3,530,559	-				+0.5
3,530,571	+				-2.6
3,530,572	-				-4.4
3,530,572	-				+1.8
3,530,580	-				+3.1
3,530,660	+				+2.9
3,530,661	-				-0.6
3,530,703	-				+1.3
3,530,816	+				-0.8
3,530,816	+				-0.1
3,530,816	+				-0.6
3,530,816	+				+0.1
3,530,816	+				+0.8
3,530,817	-				-2.6
3,530,817	-				+0.3
3,530,817	-				+0.6
3,530,817	-				-0.6
3,530,817	-				-0.8
3,530,817	-				+0.5
3,530,817	-				+1.5
3,530,847	+				-1.3
3,530,847	+				-1.7
3,530,847	+				-1.7
3,530,847	+				-0.8
3,530,847	+				-1.1
3,530,848	-				+0.4
3,530,848	-				-1.3
3,530,848	-				-2.6
3,530,848	-				-1.7
3,530,848	-				+1.6
3,530,848	-				+1.6
3,530,848	-				-3.0
3,530,848	-				-1.4
3,530,848	-				-1.5
3,530,848	-				-3.4
3,531,010	+		DDA3937_RS15385	0.38	-1.3
3,531,010	+		DDA3937_RS15385	0.38	+1.0
3,531,010	+		DDA3937_RS15385	0.38	+1.2
3,531,010	+		DDA3937_RS15385	0.38	-2.7
3,531,010	+		DDA3937_RS15385	0.38	-2.1
3,531,010	+		DDA3937_RS15385	0.38	-0.0
3,531,010	+		DDA3937_RS15385	0.38	+1.7
3,531,011	-		DDA3937_RS15385	0.39	-1.5
3,531,011	-		DDA3937_RS15385	0.39	-1.3
3,531,011	-		DDA3937_RS15385	0.39	+0.3
3,531,011	-		DDA3937_RS15385	0.39	-1.7
3,531,102	-		DDA3937_RS15385	0.63	-2.1
3,531,147	+		DDA3937_RS15385	0.75	+0.3
3,531,147	+		DDA3937_RS15385	0.75	-3.3
3,531,147	+		DDA3937_RS15385	0.75	+1.1
3,531,147	+		DDA3937_RS15385	0.75	+0.3
3,531,148	-		DDA3937_RS15385	0.75	-3.1
3,531,148	-		DDA3937_RS15385	0.75	+0.1
3,531,148	-		DDA3937_RS15385	0.75	+1.7
3,531,148	-		DDA3937_RS15385	0.75	-2.0
3,531,148	-		DDA3937_RS15385	0.75	+2.0
3,531,149	+		DDA3937_RS15385	0.75	+0.9
3,531,149	+		DDA3937_RS15385	0.75	-1.2
3,531,149	+		DDA3937_RS15385	0.75	-1.7
3,531,149	+		DDA3937_RS15385	0.75	-2.0
3,531,149	+		DDA3937_RS15385	0.75	+2.2
3,531,149	+		DDA3937_RS15385	0.75	+1.8
3,531,150	-		DDA3937_RS15385	0.75	+1.3
3,531,150	-		DDA3937_RS15385	0.75	+3.3
3,531,159	+		DDA3937_RS15385	0.78	-1.8
3,531,159	+		DDA3937_RS15385	0.78	+1.5
3,531,160	-		DDA3937_RS15385	0.78	-1.1
3,531,160	-		DDA3937_RS15385	0.78	-3.8
3,531,160	-		DDA3937_RS15385	0.78	+0.2
3,531,213	+				-0.2
3,531,213	+				-0.0
3,531,214	-				-1.6
3,531,232	-				+0.3
3,531,245	+				-0.5
3,531,245	+				-2.6
3,531,245	+				-0.8
3,531,245	+				-2.7
3,531,245	+				+2.2
3,531,246	-				+1.0
3,531,246	-				-1.8
3,531,246	-				-2.0
3,531,246	-				-0.5
3,531,246	-				-2.9
3,531,248	+				+1.2
3,531,249	-				-0.8
3,531,258	+				-0.6
3,531,258	+				-0.1
3,531,258	+				-0.1
3,531,258	+				-1.7
3,531,258	+				+0.8
3,531,258	+				-1.0
3,531,258	+				-1.3
3,531,258	+				-2.8
3,531,259	-				-0.1
3,531,259	-				+1.0
3,531,259	-				+2.1
3,531,336	+				-1.1
3,531,336	+				-0.3
3,531,371	-				-4.0