Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15050

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,452,364	+				-0.1
3,452,439	+		DDA3937_RS15045	0.17	+0.7
3,452,440	-		DDA3937_RS15045	0.17	-0.8
3,452,514	+		DDA3937_RS15045	0.26	+1.5
3,452,514	+		DDA3937_RS15045	0.26	-0.6
3,452,515	-		DDA3937_RS15045	0.26	-2.7
3,452,515	-		DDA3937_RS15045	0.26	-1.0
3,452,515	-		DDA3937_RS15045	0.26	+1.7
3,452,515	-		DDA3937_RS15045	0.26	-2.4
3,452,582	+		DDA3937_RS15045	0.34	-0.7
3,452,583	-		DDA3937_RS15045	0.34	-0.3
3,452,612	+		DDA3937_RS15045	0.37	-3.1
3,452,612	+		DDA3937_RS15045	0.37	-1.5
3,452,612	+		DDA3937_RS15045	0.37	-1.6
3,452,613	-		DDA3937_RS15045	0.37	+1.7
3,452,613	-		DDA3937_RS15045	0.37	+0.1
3,452,631	+		DDA3937_RS15045	0.39	-0.0
3,452,631	+		DDA3937_RS15045	0.39	-1.3
3,452,631	+		DDA3937_RS15045	0.39	-2.9
3,452,632	-		DDA3937_RS15045	0.40	-1.9
3,452,632	-		DDA3937_RS15045	0.40	-2.1
3,452,632	-		DDA3937_RS15045	0.40	-0.1
3,452,632	-		DDA3937_RS15045	0.40	-0.5
3,452,633	+		DDA3937_RS15045	0.40	-1.1
3,452,704	-		DDA3937_RS15045	0.48	+1.8
3,452,784	+		DDA3937_RS15045	0.57	-1.5
3,452,785	-		DDA3937_RS15045	0.57	-1.1
3,452,835	+		DDA3937_RS15045	0.63	+0.8
3,452,835	+		DDA3937_RS15045	0.63	-1.5
3,452,835	+		DDA3937_RS15045	0.63	+2.5
3,452,836	-		DDA3937_RS15045	0.63	-0.2
3,452,836	-		DDA3937_RS15045	0.63	+0.4
3,452,836	-		DDA3937_RS15045	0.63	+0.4
3,453,026	+		DDA3937_RS15045	0.85	+2.4
3,453,026	+		DDA3937_RS15045	0.85	-0.0
3,453,027	-		DDA3937_RS15045	0.86	-1.6
3,453,045	+		DDA3937_RS15045	0.88	+0.2
3,453,112	+				-1.3
3,453,113	-				+1.8
3,453,113	-				+1.2
3,453,181	-				-2.7
3,453,184	+				+0.9
3,453,190	+				-1.1
3,453,190	+				-0.5
3,453,191	-				+3.0
3,453,191	-				+1.8
3,453,191	-				-0.2
3,453,191	-				+1.0
3,453,191	-				-2.5
3,453,194	+				-1.8
3,453,194	+				-1.6
3,453,195	-				-0.1
3,453,195	-				+1.2
3,453,206	+				-1.9
3,453,206	+				-0.2
3,453,207	-				+0.5
3,453,275	+				+1.5
3,453,502	+				+2.5
3,453,587	+		DDA3937_RS15050	0.41	+0.4
3,453,587	+		DDA3937_RS15050	0.41	-1.6
3,453,587	+		DDA3937_RS15050	0.41	+1.6
3,453,587	+		DDA3937_RS15050	0.41	-0.2
3,453,588	-		DDA3937_RS15050	0.41	-1.5
3,453,588	-		DDA3937_RS15050	0.41	-0.8
3,453,588	-		DDA3937_RS15050	0.41	-1.8
3,453,588	-		DDA3937_RS15050	0.41	-0.1
3,453,590	+		DDA3937_RS15050	0.41	-1.8
3,453,590	+		DDA3937_RS15050	0.41	-1.3
3,453,590	+		DDA3937_RS15050	0.41	-3.3
3,453,590	+		DDA3937_RS15050	0.41	-1.6
3,453,590	+		DDA3937_RS15050	0.41	-0.8
3,453,591	-		DDA3937_RS15050	0.42	-1.9
3,453,618	+		DDA3937_RS15050	0.46	-0.2
3,453,618	+		DDA3937_RS15050	0.46	-0.0
3,453,619	-		DDA3937_RS15050	0.47	+1.0
3,453,619	-		DDA3937_RS15050	0.47	+2.3
3,453,723	+		DDA3937_RS15050	0.66	-0.2
3,453,724	-		DDA3937_RS15050	0.66	-2.7
3,453,724	-		DDA3937_RS15050	0.66	+1.4
3,454,088	+		DDA3937_RS15055	0.13	-0.2
3,454,089	-		DDA3937_RS15055	0.13	-1.5
3,454,194	+		DDA3937_RS15055	0.21	-0.9
3,454,194	+		DDA3937_RS15055	0.21	+1.1
3,454,194	+		DDA3937_RS15055	0.21	-0.7
3,454,194	+		DDA3937_RS15055	0.21	+0.4
3,454,194	+		DDA3937_RS15055	0.21	+0.7
3,454,195	-		DDA3937_RS15055	0.21	-0.8
3,454,269	+		DDA3937_RS15055	0.26	-2.2
3,454,269	+		DDA3937_RS15055	0.26	-1.7
3,454,353	+		DDA3937_RS15055	0.32	+0.9
3,454,354	-		DDA3937_RS15055	0.32	+1.5
3,454,396	+		DDA3937_RS15055	0.36	-0.8
3,454,397	-		DDA3937_RS15055	0.36	+2.5
3,454,397	-		DDA3937_RS15055	0.36	-1.6
3,454,585	+		DDA3937_RS15055	0.49	-3.3
3,454,585	+		DDA3937_RS15055	0.49	-0.1
3,454,585	+		DDA3937_RS15055	0.49	+0.1
3,454,585	+		DDA3937_RS15055	0.49	+0.1
3,454,585	+		DDA3937_RS15055	0.49	+1.0
3,454,585	+		DDA3937_RS15055	0.49	-1.6
3,454,585	+		DDA3937_RS15055	0.49	-0.2
3,454,585	+		DDA3937_RS15055	0.49	+1.1
3,454,585	+		DDA3937_RS15055	0.49	-3.1
3,454,585	+		DDA3937_RS15055	0.49	-0.1
3,454,585	+		DDA3937_RS15055	0.49	-3.4
3,454,585	+		DDA3937_RS15055	0.49	-0.3
3,454,585	+		DDA3937_RS15055	0.49	+1.6
3,454,585	+		DDA3937_RS15055	0.49	+0.7
3,454,585	+		DDA3937_RS15055	0.49	+1.2
3,454,585	+		DDA3937_RS15055	0.49	+0.1
3,454,585	+		DDA3937_RS15055	0.49	+0.0
3,454,585	+		DDA3937_RS15055	0.49	+1.8
3,454,585	+		DDA3937_RS15055	0.49	-0.1
3,454,585	+		DDA3937_RS15055	0.49	+2.4
3,454,586	-		DDA3937_RS15055	0.49	-0.3
3,454,586	-		DDA3937_RS15055	0.49	+1.6
3,454,586	-		DDA3937_RS15055	0.49	+0.7
3,454,586	-		DDA3937_RS15055	0.49	-0.5
3,454,586	-		DDA3937_RS15055	0.49	+0.8
3,454,586	-		DDA3937_RS15055	0.49	-0.2
3,454,586	-		DDA3937_RS15055	0.49	+0.5
3,454,586	-		DDA3937_RS15055	0.49	+0.4
3,454,586	-		DDA3937_RS15055	0.49	-1.8
3,454,586	-		DDA3937_RS15055	0.49	+0.2
3,454,586	-		DDA3937_RS15055	0.49	+0.0
3,454,586	-		DDA3937_RS15055	0.49	+1.7
3,454,586	-		DDA3937_RS15055	0.49	+0.4
3,454,586	-		DDA3937_RS15055	0.49	+0.4
3,454,586	-		DDA3937_RS15055	0.49	-0.2
3,454,586	-		DDA3937_RS15055	0.49	-2.2
3,454,586	-		DDA3937_RS15055	0.49	+2.2
3,454,586	-		DDA3937_RS15055	0.49	+0.3
3,454,586	-		DDA3937_RS15055	0.49	+2.3
3,454,589	+		DDA3937_RS15055	0.50	-1.5
3,454,590	-		DDA3937_RS15055	0.50	+1.5
3,454,689	+		DDA3937_RS15055	0.57	+1.2
3,454,731	+		DDA3937_RS15055	0.60	-2.3
3,454,731	+		DDA3937_RS15055	0.60	-0.0
3,454,731	+		DDA3937_RS15055	0.60	+1.2
3,454,750	+		DDA3937_RS15055	0.61	-0.1
3,454,750	+		DDA3937_RS15055	0.61	+1.3
3,454,797	+		DDA3937_RS15055	0.65	-1.6
3,454,797	+		DDA3937_RS15055	0.65	+0.8
3,454,797	+		DDA3937_RS15055	0.65	+0.4
3,454,797	+		DDA3937_RS15055	0.65	+1.1
3,454,797	+		DDA3937_RS15055	0.65	-1.1
3,454,798	-		DDA3937_RS15055	0.65	+0.9
3,454,803	+		DDA3937_RS15055	0.65	-0.6
3,454,803	+		DDA3937_RS15055	0.65	-0.8
3,454,804	-		DDA3937_RS15055	0.65	+1.1
3,454,804	-		DDA3937_RS15055	0.65	+0.7