Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,443,111	+				+1.3
3,443,159	+				-0.5
3,443,160	-				-0.6
3,443,160	-				+3.0
3,443,160	-				+1.5
3,443,178	+				+0.5
3,443,179	-				+1.0
3,443,179	-				-0.5
3,443,180	+				-0.8
3,443,181	-				+4.1
3,443,181	-				-0.0
3,443,181	-				-1.6
3,443,181	-				-0.8
3,443,181	-				-1.3
3,443,181	-				+1.9
3,443,181	-				-2.7
3,443,185	-				+3.1
3,443,185	-				-1.9
3,443,193	-				+1.7
3,443,194	+				-0.9
3,443,194	+				+0.5
3,443,202	+				-0.8
3,443,202	+				-1.2
3,443,267	+				-0.5
3,443,268	-				-2.4
3,443,306	+				-3.2
3,443,372	-		DDA3937_RS15000	0.11	-2.7
3,443,377	+		DDA3937_RS15000	0.11	+0.1
3,443,378	-		DDA3937_RS15000	0.11	+0.6
3,443,378	-		DDA3937_RS15000	0.11	-0.0
3,443,378	-		DDA3937_RS15000	0.11	-1.0
3,443,378	-		DDA3937_RS15000	0.11	-1.1
3,443,378	-		DDA3937_RS15000	0.11	-0.0
3,443,378	-		DDA3937_RS15000	0.11	+1.3
3,443,379	+		DDA3937_RS15000	0.12	-2.2
3,443,379	+		DDA3937_RS15000	0.12	+0.4
3,443,379	+		DDA3937_RS15000	0.12	-3.5
3,443,380	-				-0.0
3,443,380	-		DDA3937_RS15000	0.12	+0.2
3,443,380	-		DDA3937_RS15000	0.12	+0.4
3,443,380	-		DDA3937_RS15000	0.12	-0.6
3,443,380	-		DDA3937_RS15000	0.12	-1.0
3,443,380	-		DDA3937_RS15000	0.12	-1.6
3,443,455	+		DDA3937_RS15000	0.21	-0.8
3,443,456	-		DDA3937_RS15000	0.21	-0.5
3,443,464	+		DDA3937_RS15000	0.22	-2.5
3,443,638	+		DDA3937_RS15000	0.45	+1.4
3,443,712	+		DDA3937_RS15000	0.54	+0.0
3,443,712	+		DDA3937_RS15000	0.54	+1.2
3,443,712	+		DDA3937_RS15000	0.54	+1.1
3,443,712	+		DDA3937_RS15000	0.54	-1.7
3,443,713	-		DDA3937_RS15000	0.54	+1.9
3,443,713	-		DDA3937_RS15000	0.54	-1.6
3,443,713	-		DDA3937_RS15000	0.54	+0.2
3,443,713	-		DDA3937_RS15000	0.54	+0.4
3,443,713	-		DDA3937_RS15000	0.54	-1.3
3,443,715	+		DDA3937_RS15000	0.54	+0.5
3,443,715	+		DDA3937_RS15000	0.54	-2.9
3,443,715	+		DDA3937_RS15000	0.54	-1.0
3,443,715	+		DDA3937_RS15000	0.54	+1.0
3,443,715	+		DDA3937_RS15000	0.54	-0.7
3,443,715	+		DDA3937_RS15000	0.54	+0.6
3,443,811	+		DDA3937_RS15000	0.67	+2.2
3,443,811	+		DDA3937_RS15000	0.67	-1.3
3,443,811	+		DDA3937_RS15000	0.67	+1.9
3,443,811	+		DDA3937_RS15000	0.67	-1.9
3,443,811	+		DDA3937_RS15000	0.67	-1.5
3,443,811	+		DDA3937_RS15000	0.67	+0.2
3,443,811	+		DDA3937_RS15000	0.67	-0.4
3,443,811	+		DDA3937_RS15000	0.67	-4.2
3,443,811	+		DDA3937_RS15000	0.67	-1.6
3,443,811	+		DDA3937_RS15000	0.67	-2.6
3,443,811	+		DDA3937_RS15000	0.67	-4.6
3,443,812	-		DDA3937_RS15000	0.67	-0.0
3,443,812	-		DDA3937_RS15000	0.67	+1.3
3,443,812	-		DDA3937_RS15000	0.67	+0.5
3,443,812	-		DDA3937_RS15000	0.67	+0.0
3,443,812	-		DDA3937_RS15000	0.67	-0.4
3,443,812	-		DDA3937_RS15000	0.67	+0.3
3,443,975	+		DDA3937_RS15000	0.87	+0.1
3,443,975	+		DDA3937_RS15000	0.87	+1.0
3,443,975	+		DDA3937_RS15000	0.87	+1.1
3,443,975	+		DDA3937_RS15000	0.87	+1.2
3,443,975	+		DDA3937_RS15000	0.87	-0.8
3,443,975	+		DDA3937_RS15000	0.87	+0.9
3,443,976	-		DDA3937_RS15000	0.88	+1.1
3,443,976	-		DDA3937_RS15000	0.88	-2.4
3,443,983	-		DDA3937_RS15000	0.88	+2.4
3,444,076	+				-2.9
3,444,076	+				-1.6
3,444,077	-				+0.3
3,444,077	-				-0.2
3,444,077	-				-0.1
3,444,077	-				-2.4
3,444,077	-				-3.9
3,444,092	-				-0.5
3,444,092	-				+0.1
3,444,177	+		DDA3937_RS15005	0.13	+0.1
3,444,178	-		DDA3937_RS15005	0.13	-1.6
3,444,254	+		DDA3937_RS15005	0.22	-0.1
3,444,254	+		DDA3937_RS15005	0.22	-0.4
3,444,254	+		DDA3937_RS15005	0.22	-2.2
3,444,254	+		DDA3937_RS15005	0.22	-2.2
3,444,254	+		DDA3937_RS15005	0.22	-2.4
3,444,254	+		DDA3937_RS15005	0.22	-1.3
3,444,254	+		DDA3937_RS15005	0.22	-1.7
3,444,255	-		DDA3937_RS15005	0.22	-1.5
3,444,255	-		DDA3937_RS15005	0.22	-0.2
3,444,255	-		DDA3937_RS15005	0.22	+0.6
3,444,255	-		DDA3937_RS15005	0.22	-0.5
3,444,255	-		DDA3937_RS15005	0.22	+0.9
3,444,255	-		DDA3937_RS15005	0.22	+0.5
3,444,355	+		DDA3937_RS15005	0.35	+0.5
3,444,355	+		DDA3937_RS15005	0.35	-1.6
3,444,355	+		DDA3937_RS15005	0.35	-3.0
3,444,356	-				-0.5
3,444,360	+		DDA3937_RS15005	0.35	-1.3
3,444,360	+		DDA3937_RS15005	0.35	+1.6
3,444,360	+		DDA3937_RS15005	0.35	-2.2
3,444,360	+		DDA3937_RS15005	0.35	-1.0
3,444,360	+		DDA3937_RS15005	0.35	-2.0
3,444,360	+		DDA3937_RS15005	0.35	-1.3
3,444,361	-		DDA3937_RS15005	0.35	+1.2
3,444,361	-		DDA3937_RS15005	0.35	+0.2
3,444,361	-		DDA3937_RS15005	0.35	-1.5
3,444,361	-		DDA3937_RS15005	0.35	+3.1
3,444,362	+		DDA3937_RS15005	0.35	-3.3
3,444,521	+		DDA3937_RS15005	0.55	-0.3
3,444,521	+		DDA3937_RS15005	0.55	-0.3
3,444,522	-		DDA3937_RS15005	0.55	-2.8
3,444,569	+		DDA3937_RS15005	0.60	+0.2
3,444,569	+		DDA3937_RS15005	0.60	+1.5
3,444,570	-		DDA3937_RS15005	0.61	+1.0
3,444,853	-				+1.4
3,444,853	-				+1.6
3,444,950	+				-1.0
3,444,950	+				-1.9
3,444,950	+				-1.0
3,444,950	+				-1.5
3,444,950	+				-0.5
3,444,951	-				+2.4
3,444,951	-				-0.9
3,444,951	-				+1.7
3,444,951	-				-1.5
3,444,951	-				+0.5
3,444,951	-				-2.0
3,444,962	+				+1.5
3,444,962	+				+0.8
3,444,963	-				+0.6
3,445,147	-		DDA3937_RS15010	0.21	+2.4
3,445,154	+		DDA3937_RS15010	0.22	-2.2
3,445,199	+		DDA3937_RS15010	0.27	-2.6
3,445,199	+		DDA3937_RS15010	0.27	+0.8
3,445,200	-		DDA3937_RS15010	0.27	-1.0
3,445,200	-		DDA3937_RS15010	0.27	+1.2
3,445,200	-		DDA3937_RS15010	0.27	-1.8
3,445,283	+		DDA3937_RS15010	0.36	-2.0
3,445,343	+		DDA3937_RS15010	0.42	-1.8
3,445,344	-		DDA3937_RS15010	0.42	+2.1
3,445,344	-		DDA3937_RS15010	0.42	-1.0
3,445,344	-		DDA3937_RS15010	0.42	+2.2
3,445,344	-		DDA3937_RS15010	0.42	+1.1
3,445,352	+		DDA3937_RS15010	0.43	+1.3
3,445,352	+		DDA3937_RS15010	0.43	-0.8
3,445,353	-		DDA3937_RS15010	0.43	+1.8
3,445,353	-		DDA3937_RS15010	0.43	+0.4
3,445,478	+		DDA3937_RS15010	0.56	+0.4
3,445,479	-		DDA3937_RS15010	0.56	-4.1
3,445,479	-		DDA3937_RS15010	0.56	-0.4
3,445,479	-		DDA3937_RS15010	0.56	-2.5
3,445,548	+		DDA3937_RS15010	0.63	+2.3
3,445,574	+		DDA3937_RS15010	0.66	-0.1
3,445,574	+		DDA3937_RS15010	0.66	+0.5
3,445,575	-		DDA3937_RS15010	0.66	+1.0
3,445,634	+		DDA3937_RS15010	0.72	-0.0
3,445,634	+		DDA3937_RS15010	0.72	-0.5
3,445,634	+		DDA3937_RS15010	0.72	-1.8
3,445,634	+		DDA3937_RS15010	0.72	+1.9
3,445,634	+				-0.0
3,445,634	+		DDA3937_RS15010	0.72	+1.9
3,445,634	+		DDA3937_RS15010	0.72	+0.9
3,445,635	-		DDA3937_RS15010	0.72	-0.3
3,445,635	-		DDA3937_RS15010	0.72	-2.5
3,445,635	-		DDA3937_RS15010	0.72	-1.3